LOC118964559


Basic Information

Item Value
gene id LOC118964559
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10469266 ~ 10475168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051636.1
CTTTAGCCTGCGCCATGTGACCGGCGGCCGGGTCCCTTAGCGCTCTGTGCTTTGACCTACATGGAGACAAGAGCACTGCTGTTTCTTGCCctcggctgctgctgctgctgctgctaggaCAACACAGGCAGCCGTGCAGCCAGTCCTTTGGGTCCCGCTCCACCCCATTGGCCAGGGGTCCGCTGGAATGTTTATCTGATTGGCCGCTGAAAGCGGGGTCCCCACTCGCTACCACCTCCTCTAGGTAGGAAGACGTCACTTCCAGGGCGGCTTTCCCGCCCTTCCCCGTGGTCGTGACGCTGAGTAGCTCCTGGCGCTCCCGCTGGCGCCCCGCGTCGGGCAACAACTCCACGAAGTGGCCCGTCTCCTTGAGGCGTTGCTGGATCATGGGAGTAAGGGGCATGTCGAAAGTGAAGCCCGAGTCCGCCTCGTCGTCAGCCGAGGAAGATAGGGCATCCAGAGAGTCCAGGCTGCTGTAAAGGGTGCTACGGAAACGGTCTGACTCCAGGATGCTCTCGAACTGCGAGCTGAAGACGTCGGTGGCCTCCTGGCTCTCCGATGTCTCCTTGCCATCCCGGTTATCCGACGGGTCCTCGCTGCCATTGGTCTTCGTACTCCTGAGGGAGTCGGGGACAAACAGAGACAATCATGGAAACTTTGACTGGGGACAAAAGTCAAGTCTTAATCTTAACTTAGCAGAAGAAGACTGAAATTCAAACTAGCCTGTGGGAAACCTTAGCCATTATATTTCACAGTACATATCCATCTGGCATTCCTCCTCAATTAAATGTTTTgaaccatagagatagatagaggactcatctttgtatctgcgCTAGTATagcatctccattttgaagtagtcaattttTCTTCActattggctgatccctcctgatgacccggtTGAACATGACTCCAATAGGGTCACCAGGAGGGATGAGtcaatgaagttggaagtcccatCCAGTTTACTACATTAAAAATTGTGGAAGCCCTCAAGGGCACTGCCCATGCTAACACGGCCTTTTGGCCACTAGTGGCCTCTATCATCCTCTATGgtctgagtctacctttaatgaGAGGCATTATTCAAAACCACCTCATCTGCAATTGGATCACCTTCAACCAACCAGAGGACGGCCTAATTCAAAGCAGTGTTTGGCCACCTGTGATTTTGTCCTAAAACCCACCCATTGGTTCTGAAAGGATGCGGATTGGACCGGTCATTTGCTAACTCGTTCCAAACGCCAATCTATTGGAGGAAGGCCTGACTGATGTGATAGTGAAGTGAATCAAAATGGAGAACgctgtgatcaggctggttccacaaGGGTACTGAAACCTGGCCTGAATTGCTTGGATTAGGATATTGTTCCTCTACCAAGAAGAAATAGATTAGATTCAGCAATATGACGCTACCATAACAAGCGGGGCAACTTGCAACCCAAACAAGAAGAGTAAAAAACAAGATGCTAATCTCGTCAGCATTTGTTGTCAAGCGGCTATCATGTTGCTCGAGGGAAGCGTGTAACTCCCCTGCACATGCTCAAAAGTATCTGTACGAGTTAACTAGTGCAGCATCTTGCTTGGCACTCCCCATGATAACATCTTTGGTCCCACTGCTGTTTATGGTCACATCATACTGCTTACTTCCTGCTCCTCAAACAGAGCTAAATACACTGTCCCTGTCGTAGAGGCCTATAGCCGCTGTGGTGAACTCAGCTAAATGCACTGTCCCTGTCGTAGAGGCCTATAGCCGCTGTGGTGAACTCTCAGAGGAAGTTATAAAGCACACGATTCCATTATTAACCCAGAGACCTTGCACCTTTCTACCTCCTCTCAGCGAAActctaacaaaacaacacatttctgtGGACTGTGACAATGCTAGTTTCCATGTAATGGAAACATCCAGCAACTAAAAGGAACTCAACATTTTCTAAGGACAAAAAAGCTACGGACGTTAGAAATATTGAAACATAGTGGGGGATCAAGTGTAAATAGTGCCATAAAATAAACAGTGAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051636.1 True 2029 mRNA 0.49 2 10469266 10475168

Neighbor

gene id symbol gene type direction distance location
sh2d4a sh2d4a coding downstream 73714 10375111 ~ 10395552 (-)
ddx4 vas coding downstream 138832 10318236 ~ 10330434 (-)
LOC110523172 il31r coding downstream 151178 10303641 ~ 10318088 (-)
map3k1 map3k1 coding downstream 289177 10127268 ~ 10180089 (-)
hmgcs1 LOC106571543 coding downstream 385885 10068877 ~ 10083381 (-)
LOC110523178 c209a coding upstream 167689 10642857 ~ 10643948 (-)
cd209a cd209a coding upstream 187452 10662620 ~ 10663665 (-)
nrg1 nrg1 coding upstream 218392 10693560 ~ 10851760 (-)
wrn wrn coding upstream 396681 10871849 ~ 10907802 (-)
ubxn8 ubxd6 coding upstream 489181 10964349 ~ 10968244 (-)
G366368 NA non-coding downstream 35196 10432641 ~ 10434070 (-)
G366314 NA non-coding downstream 48645 10400480 ~ 10420621 (-)
G366277 NA non-coding downstream 134844 10333768 ~ 10334422 (-)
G366302 NA non-coding downstream 173572 10295022 ~ 10295694 (-)
G366279 gp130 non-coding downstream 184628 10282935 ~ 10284638 (-)
G366472 NA non-coding upstream 98406 10573574 ~ 10575091 (-)
G366448 NA non-coding upstream 106160 10581328 ~ 10584712 (-)
G366531 NA non-coding upstream 181374 10656542 ~ 10661403 (-)
G366575 NA non-coding upstream 266535 10741703 ~ 10741976 (-)
G366647 NA non-coding upstream 378775 10853943 ~ 10855613 (-)
G365752 NA other downstream 1279168 9189669 ~ 9190098 (-)
G364754 NA other downstream 1418558 9047542 ~ 9099000 (-)
G364322 NA other downstream 2165083 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 3743286 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 3914551 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 1658884 12134052 ~ 12136790 (-)
G368921 NA other upstream 2230398 12705566 ~ 12706092 (-)
G370333 NA other upstream 3732022 14207190 ~ 14208705 (-)
G370635 NA other upstream 3952170 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 4517960 14988147 ~ 14995197 (-)

Expression


Co-expression Network