LOC110523189 (rab3c)


Basic Information

Item Value
gene id LOC110523189
gene name rab3c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11433653 ~ 11498201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601665.2
ggttaaggtaaggtatTTGGTTATGGTTAGGCTACGGGTAGGGATTAGGGTTACGGTTTAGGGTTTAGGATCGGGAAgtccaaggatcccagatagaaCTAACCGACTGTGAACGCGCGCAGTCGCGTGTCATTGCGCGCTCTCGTCTGGCTTGAAAAAAGGGGACAGCTCCGTTGCTTAAATCCAGAGGGAGGCACAGGCGGAGCATCTCTGGGTATCACTCGCTGAATTGAACACAACACATTTGGAAATCTGTTTGTCATTTAGTGGCACGCTCCAGGACGCACCTATGCAGATGGCTGCAACACAGCAAGAGGGCTCGGACCAGAACTTTGATCACATGTTCAAACTGCTTATCATCGGCAACAGCAGTGTAGGAAAAACGTCCTTTCTCTTCCGCTATGCCGATGATTCCTTCACCTCCGCTTTCGTCAGCACTGTGGGCATAGATTTCAAAGTGAAAACAGTCTACAAGAACGACAAGCGGATCAAACTGCAGATATGGGACACAGCGGGTCAGGAGCGATACCGGACCATTACCACAGCATACTACAGAGGAGCTATGGGCTTCATCCTGATGTATGACATCACCAACGAGGAGTCCTTCGGTTGTGTGCAGGACTGGTCAACCCAGATTAAGACGTACTCATGGGACAACGCCCAGGTAATCCTGGCGGGGAACAAGGCtgacatggaggaggagagagtggtgtCAGTGGATAGTGGTCGAATGCTGGCCGAACAGCTTGGGTTTGAGTTCTTCGAGACGAGTGCCAAGGACAATGTCAACGTAAAACAAACATTTGAGCGTCTCGTCGACCTCATATGCGACAAGATGTCCGACAGTTTAGAGACTGACCCGTCTGTCACCACAGGAACGTCCAATGCTAGGCTAACTGACAACCCTCCTCCCTTGCAGCAGCCCAACTGCGGTTGTTAACCAGGAAAATGACAACAATCTAAGACGTATGAGATTGCCAAAATATTGTATTATCCCTTAGGTAGATCTGTAATACCTTAAAGTGTATTATTCTTCATATCTGACTTCTGATGTGCCTAGTacattttttcagattttttttatgtttcaaATTGTCTGACACATATGTTGTACGTTCACAAAACTGAAAAATAGACATGTACAGTAATGCCATGTCAGTATGCGATGACCATGAATCACTAATGCCACGTCAGTCGGTAcatttatctatttatttatataaaacagaaatacaggATCTTCTATATACTATATTAACCAGAGAAAATAGTGTGTTGTTTATGGAATGCTCTGTCAATGACATGATGATCTGTGTATGGTTAAGTTGCCAGTTCCCTCTTGCATATCCTGTATTTCTTCCCTCCCACTattcctactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtcacttttAAGCATTGAACGTTACCGTAAAAAAGTATTACCTACCTTACGAAAGTGATGCCTTTCAGTTAGTTGTTTGTATATTGTTTCATATTTTTTCCATCGCCACACTAGCTGTGAAACCCATGTGATTATCTGTGGTTAGAATGGAccaatgtgattatctgaggtTAGAATGAACCAATGTGATTATCCGAGGTTAGAATGAACCAATGTGATTATCTGTGGTTAGAACCAATGTGTTTATCTGTGGTTAGAACCAATGTATTTATCTGTGGTTAGACAGATGCATGGCTTTATTCTCAGGATATTAATAAAGTAGTTTGTTCAGTGACTGTGGATTAGCTGCCATAGTATAACAGTTGTCTAATactaacatgtacagtactatattGTAGGATAGGTAGGTAGTCATGATAATAATGCCAGTGTGGTATTTAACAGTTTACTTCATTAAATAAGTGGTACATTTAATGTGGCTGTAAAGTGGTATGATTACTAACCCGATGACTGTTGTTTGAAAACAGTATGCATCTGTGAGTGCAGAGAACAGTTTCTCAATGTTATATCTATGTACAAGCAATGGTCTGTGCAATACTGCCAACTGGTCAGTCATCTGGAGTAACTAAGACCTAATCATTTCTGCAGTGCGGAATCCATTGTAGGTCATTCTCAGTTGTCAGCCGTACGTTTCAGTCTGGGTTTACGGATGTCCTCAAATGGGTTCCGTACTGCAGTGCTAGGTCCAGTGCTGCGACTGTTAATGAAATGGTCCTAAATTAACAGCAGAAAGCTCATAATAATGCCAGTTCCTGGAACAATACAGATTGAGAGACATTGTGAGACATACAGAGAGCCCAAGGAGAGGTCCCAGACAACTATTTCAGGGATGTGAGTCACGGCATCAATATTTCAAAAGTCTGACCTGACTTGACTACAGGATTATGAATAAGGAGCCACTTCCATAATTCATACCATCTCATTCTCTGGACTTCACCTCAAATACTTTTTATTAGAGACACTCCTTCTgacattattcaccattcattTACTGTACTTGCAGTAATGTTTTACTTCTGTTTTCGACTCTGTTACTTTTCTATTGTTATAGAAAAGTTCCCTTGAAGAAACCAGAGACAGTTATCCCCACGTGCCAATGTGCTATAAAACAAATAGAAAGGAAGCTGTTTTTAGGTGTTGTTAGATTATTTTGTGAAAAAGGGTATGTTACTATTAGCTAGACCAAGtgtcatgccaaatagtgtcTTGTAGAAAATGCTGCAATCGATTGTTGCACTTGTGAAAACGAACTGCCTCCGAATCGTTGCATTTTCAGTAGCAAACAATTTTCAGCAGCACACTTGCATGAAATTTTGCAAGTTCtatttatatatatctatatcggTATActtattgtattgtatttgtgcACCTTCAGGTCTCGTCTTGAGGTGCAATGGGCCAATAAGTGCAatattttaaaagcctgtttCTCTGTGAATAGCCATCAGTCTGTGCCATGCATAACTGTTAGGATTGAATTCCTTTTTACGAGTGGTGTGTGAGTAGGGGTTCAATGGGCCAGGGGCGTAGTGGAAAGTCTCCTACTTTTGTAGCGGAAAACGTAAGACGAGTCCTAATAGTGGAACAAGAGAAAGCAAGTTCCGATGTCTTCCCAACTGAACCCCAGTGGGCATGATTGTGACGTGTGATAGTGAGAAAATGCAGCCTGTCAGAAAGCCAAGTCATTTTCTCACAATGTCAACACTGTTATCTAAAGACGGGAAACGTCTCTAGATGGTTCCGCTGCCAAGACAGTTGTCGACAAAGTGGTAGAGAGAATGCTGTACGTGTGAATGAGAGAGAATTCTATGTGTGATTGGCTGCCTCCCCTTGTACATTCATCCACCTCCTTGATGAAATATATACTATTTGTTGTTTTATAGACTTCAGCATGTGTACAGCTTTATATTGTGTTTTCTGGTGCAGTAACAACAGCCCTCTTAGTATGCGGGTCCCAAGATATTGAAGTGTTGTCTGTTCAGCTTCTGTGAAACATTGAGACAGAGATGAAGCCTTACTACGGTATATGCAGTAtggacagaaacaagacaaacTGGTTAATAACAGGTCACTTTAGCCTTTGTTATTGAATAAGTCATAAACGGCATTGTCATTCCAttcataacacacacaaaaagagaAACAGCGTACTTCTCTGTATACCAGGGGCTCTAATGATAACACACTAATGATCAAATGTTGACCCCCTTGACCCCTCTTAGGTTAATTGGCACTCTACTATGTACAGTACGGTGTCCTTGACAGCAGGTCACTTTCCCTTCACCTTTTTGAAACAATTGTTTGTAGTGCGCTGCTCCTCGGTCTGGCATTTTCTGCTTTGTGAACGTGGAGAAGCCAGTTCAGAGATCCTAGCCTGCCCTATTCTGGCGTCGCATCTGTTCAAGCGTAACGCCAGCTGCTCACCTCACCAATATTCTCTGGGACCTTTCCTCCATGTAGCCTAACACAATTAGAATTCAAGCGGTGAACAAACCCTCAAAAGCCTCTCACAAATTCACCATGCAACTGCTAAATGTCGTTTTCTCCTGCTGTTCTTTCACACGTTCTCAacatgtctgtactgtagctgggagTGTTTGAATCGGACTCTTCGGCTGTAGAGACACACTGGTAGTAATAAAACGTGTCAATGGCGTGTCTGGTAAAAAAGAAAGAAGTCAAGTGGTTTCTTTGAATTCTTGATTTGTATAATAGCTATCCTGTAACAGAAAATGTTTGCTGTATCTCTTTTGAGTCTTCAGATGGACCTAAACTGATAATACATAATTGTACTATTATAGTGACCTACAGTATTATATTTTCCTTGTATGAACTACTCATGAGCTGGATATTTACTTTTATGTGTATGTGACATGATGTATTACACAGGTGTTTTCAAGATGACAATAAAAATATACCAATTGTa

Function

symbol description
rab3c Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein localization to plasma membrane; regulation of exocytosis; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in endosome; plasma membrane; and synaptic vesicle. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural crest; and pectoral fin. Orthologous to human RAB3C (RAB3C, member RAS oncogene family).

NR:

description
ras-related protein Rab-3C-like isoform X2

GO: NA

KEGG:

id description
K07883 RAB3C; Ras-related protein Rab-3C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601665.2 True 4423 mRNA 0.42 5 11433653 11498201

Neighbor

gene id symbol gene type direction distance location
LOC118964560 NA coding downstream 175829 11256230 ~ 11258138 (-)
ubxn8 ubxd6 coding downstream 465409 10964349 ~ 10968244 (-)
wrn wrn coding downstream 525851 10871849 ~ 10907802 (-)
nrg1 nrg1 coding downstream 581893 10693560 ~ 10851760 (-)
cd209a cd209a coding downstream 769988 10662620 ~ 10663665 (-)
LOC110523193 gpbp1 coding upstream 121603 11619804 ~ 11630126 (-)
LOC110523194 LOC106571259 coding upstream 144264 11642465 ~ 11648512 (-)
ajm1 LOC106571253 coding upstream 169772 11667973 ~ 11697343 (-)
LOC110523196 LOC106571245 coding upstream 250256 11748457 ~ 11787242 (-)
aldh7a1 aldh7a1 coding upstream 289052 11787253 ~ 11794400 (-)
G367344 NA non-coding downstream 3461 11425613 ~ 11430192 (-)
G367343 NA non-coding downstream 8079 11425350 ~ 11425574 (-)
G367342 NA non-coding downstream 8832 11424587 ~ 11424821 (-)
G367341 NA non-coding downstream 9212 11424142 ~ 11424441 (-)
G367338 NA non-coding downstream 13320 11420110 ~ 11420333 (-)
G367401 NA non-coding upstream 21210 11519411 ~ 11519697 (-)
G367407 NA non-coding upstream 30913 11529114 ~ 11529455 (-)
G367419 NA non-coding upstream 43864 11542065 ~ 11542308 (-)
G367455 NA non-coding upstream 57183 11555384 ~ 11573416 (-)
G367461 NA non-coding upstream 61495 11559696 ~ 11563022 (-)
G365752 NA other downstream 2243555 9189669 ~ 9190098 (-)
G364754 NA other downstream 2382945 9047542 ~ 9099000 (-)
G364322 NA other downstream 3129470 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 4707673 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 4878938 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 635851 12134052 ~ 12136790 (-)
G368921 NA other upstream 1207365 12705566 ~ 12706092 (-)
G370333 NA other upstream 2708989 14207190 ~ 14208705 (-)
G370635 NA other upstream 2929137 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 3494927 14988147 ~ 14995197 (-)

Expression

LOC110523189(rab3c) Expression in all Baseline Samples

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LOC110523189(rab3c) Expression in each Bioproject

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LOC110523189(rab3c) Expression in each Sample
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Co-expression Network