LOC110523193 (gpbp1)


Basic Information

Item Value
gene id LOC110523193
gene name gpbp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11619804 ~ 11630126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601668.2
TTTGGCCAACGAGATTCTCGCGAAACATTGCTGTATCAGCGCCATTTTGGGAAGGAGACAGGCAAAAGCGGCAAAAATTTAAAAATAAGCGAGGAATTTGCAAACACTTAAACAAGTTAATGAGATGGTCAGTGTGATACGGTTTATACATACATATCAGCGTCTTAACTTAGTCTTACGAAACAACAAAAAAGCGAATGACAACTGCTTAAGGGGGCACGAGCGAGTAAGCTGTGACAGACTGATTCTGCAAGCTAACGACGCTAGCCAACATCAGCTTGTGTTGAACCGCATGAAGGAGTCACTATCTGCAATGTAGCTAACTAACGAAGTTTTCGGAAGAGCTTTGGCATCATTGAAAGGTGAACACTGAACAGCCTCACGTTATAGGATATCCCAATCATCAAGGAAGAGAGACGTGACTTGCTACTATTGGCTCAACGTCCGAGTTGCACTGAATGGGATAAATCAGCATCTGAACATGTGGACTGGTTTTGTGGAATTACAGAATAACTATTTAATTTAGCATTTTATTTGAGACTTTGATATGTGTGTGGACTTACATCCTGCACTGACCAGCTTTAGTCTCCTCTTCCAAGTTTTCCAAATGTTTCTCAAAAAATGAATCATTTTTGAAAGCTGTAGttattattagctagctaactttatttTTGGCAACATGTGATCACACTAACATTGTATCGCCTGATTTGAACAAATATGAGTTAATGGTATCTGGGCAGTTAAAACCCCTACAAAATCACTGAATCCTTCCTAAGGTGATCGTAGCAAATCCACCCCAAATGTCTCTTTTGTAAAGTCGGGTGAGAACTTCGTTGGATTTCCTTCAACATCTCTAAAGGATTTAATCATTCTGGGAACTGGAATTACGTGGCAAAAATGGAAAGTTAGTTGGGATTATCAACGTCAACATTTTGTGATTGACCCTATCTGCACGATACATGTGGGGAGCAGATTAACTGGATAACTGACTGAGAACAAAAACACTAGGAGAATTTTGGGATTACAGCACAGGAGACGCCTCTGCTCAGTCCTCCGTAGCTGGGGCTGGAGAAACGATGTGTTGATGTCTTGCCCACCTCACTGGAGACGCAAACCTAAATGGCGCAGCATGACTTCACTCCAGCCTGGCTTAACTTTCCCACAGCACCCTCATCAGCCAAGCCCTCTCAGGTCTGTGACAAGTCTTTCCAGTCTCCTGCCAAATGTCTGGACAACCACGGGGATGTGAGTCGCAGACGCCACAACTCATCAGACGACTCAGAGCCTGTCAACGGACGCACTGGGGGAATCTTCTCTAGGAAGGAGGGTAACGGATGGGGGGTCCGGAACGGCAGCGAGGGCTCCAGCTCACGCCCTCCCCTCCAGCGTGGCGGACCTTCTCCTCGCTCCAAGAGCAAAGGCCTGTCCGAGGGCCAGCAAGGCCACAGGGACGATGGGGACATACGCAAACAGTTTGGAGCTGAAGACTTTCCATCACTCCATCCTGATGCGGACCGAGAGGTCAACCGTGACAAAGCTGTTGCCACTGGAGTATGGGAACACCCACCCAACCCTCAATCCAGGGGCTCGAAAATGATGGTGATCAAGCGCGTCTCCAGGGAGCAGCCCACACCAGCACAGACCTGCACGTCcactcctcaacaacaacaagccCCTTCCCGCAACGGCACTGGCCCCTCCCTCTACAAGGGCCCCATCCCCATATCTGTCAGTCTTCCAGTCAAGGCGAGTCGCTCCAGCTCGTCGTCTCCGGTGGACAAGGGCAGTCAGCCGCGGCTCATGATGCGTCTGACACGCATGACACGCTCAGACCGCAAGAGCACCTTCCTCAAAGCCCTCAAAAAAGACATGGTGGACGAGGAGGACCTCTATCACCACTGCAAGCATGACGATGGTTTCCATCCGCAGAACTGCAACGTGGGCTGCGGGGACGAGAACCGCAACCGTTGTGAGCGAAGTTTCTCGCAGGAGAACGGCAACATGACCACACTAACAATGAGGCAGCAAGTGCTGCGCTCCTCCACCTTCCCCCAGCAGGAGGTGCTATCCAGCTCTTTGGAGGCAGAGCACAGGTTATTGAAAGAAATGGGTTGGCAGGAGGAGAGTGAGAATGATGAGACGTGTGCCCCTCTGACGGAGGATGAGATGAGGGAGTTCCAGGCCATCAGTGAACAGCTGCAGAAGAATGGTCTGAGGAGAAACAGCTTCCTGAAGAACGGCCCTCCCATCGACTCCCTGGCCGTGTGGAAGACCAGCAACCTCCAAATGGCCACCGACACCACGGAGGAGACGGAGACCAGTAGCAGCGACACCTCGGACGACGATGCCTAAAGCAGCCTTCATCAATAACCCTATTCACTGCTACTACACCTAACCCTCTCTCACcagaggaaagagacatttaccCCCTGATGCAGAGCGGGCAATTCAGACGTCCTCCCACCATTTCATTTCACAGGCCCCCTTCAAGACATGGACAGATGTTCCGAATGGACTTGAGAAAGAACACTGCTTTATGGCTTTGTAGCAAGGCCCCTATTTGTTGGGGCCGGGGGGGGTGGAGATTTCAATGTTGGACTAAATGTTTGTTCCATCACTGAAAAGATTGATACTATGTACCGTATGATGAATGTGGAAAAAAAGGTCCGTTCTGGAGGCTATTGAATAAAATGATTGCAATTCAGT
>XM_021601669.2
TTTGGCCAACGAGATTCTCGCGAAACATTGCTGTATCAGCGCCATTTTGGGAAGGAGACAGGCAAAAGCGGCAAAAATTTAAAAATAAGCGAGGAATTTGCAAACACTTAAACAAGTTAATGAGATGGTCAGTGTGATACGGTTTATACATACATATCAGCGTCTTAACTTAGTCTTACGAAACAACAAAAAAGCGAATGACAACTGCTTAAGGGGGCACGAGCGAGTAAGCTGTGACAGACTGATTCTGCAAGCTAACGACGCTAGCCAACATCAGCTTGTGTTGAACCGCATGAAGGAGTCACTATCTGCAATGTAGCTAACTAACGAAGTTTTCGGAAGAGCTTTGGCATCATTGAAAGGGGCTGGAGAAACGATGTGTTGATGTCTTGCCCACCTCACTGGAGACGCAAACCTAAATGGCGCAGCATGACTTCACTCCAGCCTGGCTTAACTTTCCCACAGCACCCTCATCAGCCAAGCCCTCTCAGGTCTGTGACAAGTCTTTCCAGTCTCCTGCCAAATGTCTGGACAACCACGGGGATGTGAGTCGCAGACGCCACAACTCATCAGACGACTCAGAGCCTGTCAACGGACGCACTGGGGGAATCTTCTCTAGGAAGGAGGGTAACGGATGGGGGGTCCGGAACGGCAGCGAGGGCTCCAGCTCACGCCCTCCCCTCCAGCGTGGCGGACCTTCTCCTCGCTCCAAGAGCAAAGGCCTGTCCGAGGGCCAGCAAGGCCACAGGGACGATGGGGACATACGCAAACAGTTTGGAGCTGAAGACTTTCCATCACTCCATCCTGATGCGGACCGAGAGGTCAACCGTGACAAAGCTGTTGCCACTGGAGTATGGGAACACCCACCCAACCCTCAATCCAGGGGCTCGAAAATGATGGTGATCAAGCGCGTCTCCAGGGAGCAGCCCACACCAGCACAGACCTGCACGTCcactcctcaacaacaacaagccCCTTCCCGCAACGGCACTGGCCCCTCCCTCTACAAGGGCCCCATCCCCATATCTGTCAGTCTTCCAGTCAAGGCGAGTCGCTCCAGCTCGTCGTCTCCGGTGGACAAGGGCAGTCAGCCGCGGCTCATGATGCGTCTGACACGCATGACACGCTCAGACCGCAAGAGCACCTTCCTCAAAGCCCTCAAAAAAGACATGGTGGACGAGGAGGACCTCTATCACCACTGCAAGCATGACGATGGTTTCCATCCGCAGAACTGCAACGTGGGCTGCGGGGACGAGAACCGCAACCGTTGTGAGCGAAGTTTCTCGCAGGAGAACGGCAACATGACCACACTAACAATGAGGCAGCAAGTGCTGCGCTCCTCCACCTTCCCCCAGCAGGAGGTGCTATCCAGCTCTTTGGAGGCAGAGCACAGGTTATTGAAAGAAATGGGTTGGCAGGAGGAGAGTGAGAATGATGAGACGTGTGCCCCTCTGACGGAGGATGAGATGAGGGAGTTCCAGGCCATCAGTGAACAGCTGCAGAAGAATGGTCTGAGGAGAAACAGCTTCCTGAAGAACGGCCCTCCCATCGACTCCCTGGCCGTGTGGAAGACCAGCAACCTCCAAATGGCCACCGACACCACGGAGGAGACGGAGACCAGTAGCAGCGACACCTCGGACGACGATGCCTAAAGCAGCCTTCATCAATAACCCTATTCACTGCTACTACACCTAACCCTCTCTCACcagaggaaagagacatttaccCCCTGATGCAGAGCGGGCAATTCAGACGTCCTCCCACCATTTCATTTCACAGGCCCCCTTCAAGACATGGACAGATGTTCCGAATGGACTTGAGAAAGAACACTGCTTTATGGCTTTGTAGCAAGGCCCCTATTTGTTGGGGCCGGGGGGGGTGGAGATTTCAATGTTGGACTAAATGTTTGTTCCATCACTGAAAAGATTGATACTATGTACCGTATGATGAATGTGGAAAAAAAGGTCCGTTCTGGAGGCTATTGAATAAAATGATTGCAATTCAGT
>XM_021601670.2
CTTTGGCCAACGAGATTCTCGCGAAACATTGCTGTATCAGCGCCATTTTGGGAAGGAGACAGGCAAAAGCGGCAAAAATTTAAAAATAAGCGAGGAATTTGCAAACACTTAAACAAGTTAATGAGATGGTCAGTGTGATACGGTTTATACATACATATCAGCGTCTTAACTTAGTCTTACGAAACAACAAAAAAGCGAATGACAACTGCTTAAGGGGGCACGAGCGAGTAAGCTGTGACAGACTGATTCTGCAAGCTAACGACGCTAGCCAACATCAGCTTGTGTTGAACCGCATGAAGGAGTCACTATCTGCAATGTAGCTAACTAACGAAGTTTTCGGAAGAGCTTTGGCATCATTGAAAGGTGAACACTGAACAGCCTCACGTTATAGGATATCCCAATCATCAAGGAAGAGAGACGTGACTTGCTACTATTGGCTCAACGTCCGAGTTGCACTGAATGGGATAAATCAGCATCTGAACATGTGGACTGGTTTTGTGGAATTACAGAATAACTATTTAATTTAGCATTTTATTTGAGACTTTGATATGTGTGTGGACTTACATCCTGCACTGACCAGCTTTAGTCTCCTCTTCCAAGTTTTCCAAATGTTTCTCAAAAAATGAATCATTTTTGAAAGCTGTAGttattattagctagctaactttatttTTGGCAACATGTGATCACACTAACATTGTATCGCCTGATTTGAACAAATATGAGTTAATGGTATCTGGGCAGTTAAAACCCCTACAAAATCACTGAATCCTTCCTAAGGTGATCGTAGCAAATCCACCCCAAATGTCTCTTTTGTAAAGTCGGGTGAGAACTTCGTTGGATTTCCTTCAACATCTCTAAAGGATTTAATCATTCTGGGAACTGGAATTACGTGGCAAAAATGGAAAGTTAGTTGGGATTATCAACGTCAACATTTTGTGATTGACCCTATCTGCACGATACATGTGGGGAGCAGATTAACTGGATAACTGACTGAGAACAAAAACACTAGGAGAATTTTGGGATTACAGCACAGGAGACGCCTCTGCTCAGTCCTCCGTAGCTGGGGCTGGAGAAACGATGTGTTGATGTCTTGCCCACCTCACTGGAGACGCAAACCTAAATGGCGCAGCATGACTTCACTCCAGCCTGGCTTAACTTTCCCACAGCACCCTCATCAGCCAAGCCCTCTCAGGTCTGTGACAAGTCTTTCCAGTCTCCTGCCAAATGTCTGGACAACCACGGGGATGTGAGTCGCAGACGCCACAACTCATCAGACGACTCAGAGCCTGTCAACGGACGCACTGGGGGAATCTTCTCTAGGAAGGAGGGTAACGGATGGGGGGTCCGGAACGGCAGCGAGGGCTCCAGCTCACGCCCTCCCCTCCAGCGTGGCGGACCTTCTCCTCGCTCCAAGAGCAAAGGCCTGTCCGAGGGCCAGCAAGGCCACAGGGACGATGGGGACATACGCAAACAGTTTGGAGCTGAAGACTTTCCATCACTCCATCCTGATGCGGACCGAGAGGTCAACCGTGACAAAGCTGTTGCCACTGGAGTATGGGAACACCCACCCAACCCTCAATCCAGGGGCTCGAAAATGATGGTGATCAAGCGCGTCTCCAGGGAGCAGCCCACACCAGCACAGACCTGCACGTCcactcctcaacaacaacaagccCCTTCCCGCAACGGCACTGGCCCCTCCCTCTACAAGGGCCCCATCCCCATATCTGTCAGTCTTCCAGTCAAGGCGAGTCGCTCCAGCTCGTCGTCTCCGGTGGACAAGGGCAGTCAGCCGCGGCTCATGATGCGTCTGACACGCATGACACGCTCAGACCGCAAGAGCACCTTCCTCAAAGCCCTCAAAAAAGACATGGTGGACGAGGAGGACCTCTATCACCACTGCAAGAACTGCAACGTGGGCTGCGGGGACGAGAACCGCAACCGTTGTGAGCGAAGTTTCTCGCAGGAGAACGGCAACATGACCACACTAACAATGAGGCAGCAAGTGCTGCGCTCCTCCACCTTCCCCCAGCAGGAGGTGCTATCCAGCTCTTTGGAGGCAGAGCACAGGTTATTGAAAGAAATGGGTTGGCAGGAGGAGAGTGAGAATGATGAGACGTGTGCCCCTCTGACGGAGGATGAGATGAGGGAGTTCCAGGCCATCAGTGAACAGCTGCAGAAGAATGGTCTGAGGAGAAACAGCTTCCTGAAGAACGGCCCTCCCATCGACTCCCTGGCCGTGTGGAAGACCAGCAACCTCCAAATGGCCACCGACACCACGGAGGAGACGGAGACCAGTAGCAGCGACACCTCGGACGACGATGCCTAAAGCAGCCTTCATCAATAACCCTATTCACTGCTACTACACCTAACCCTCTCTCACcagaggaaagagacatttaccCCCTGATGCAGAGCGGGCAATTCAGACGTCCTCCCACCATTTCATTTCACAGGCCCCCTTCAAGACATGGACAGATGTTCCGAATGGACTTGAGAAAGAACACTGCTTTATGGCTTTGTAGCAAGGCCCCTATTTGTTGGGGCCGGGGGGGGTGGAGATTTCAATGTTGGACTAAATGTTTGTTCCATCACTGAAAAGATTGATACTATGTACCGTATGATGAATGTGGAAAAAAAGGTCCGTTCTGGAGGCTATTGAATAAAATGATTGCAATTCAGT

Function

symbol description
gpbp1 Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Located in cytosol; intracellular membrane-bounded organelle; and plasma membrane.

NR:

description
vasculin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601668.2 False 2709 mRNA 0.49 11 11619804 11630125
XM_021601669.2 False 2006 mRNA 0.53 10 11619804 11630125
XM_021601670.2 True 2686 mRNA 0.49 11 11619804 11630126

Neighbor

gene id symbol gene type direction distance location
LOC110523189 rab3c coding downstream 121603 11433653 ~ 11498201 (-)
LOC110523190 NA coding downstream 162145 11444736 ~ 11457659 (-)
LOC118964560 NA coding downstream 361980 11256230 ~ 11258138 (-)
ubxn8 ubxd6 coding downstream 651560 10964349 ~ 10968244 (-)
wrn wrn coding downstream 712002 10871849 ~ 10907802 (-)
LOC110523194 LOC106571259 coding upstream 12339 11642465 ~ 11648512 (-)
ajm1 LOC106571253 coding upstream 37847 11667973 ~ 11697343 (-)
LOC110523196 LOC106571245 coding upstream 118331 11748457 ~ 11787242 (-)
aldh7a1 aldh7a1 coding upstream 157127 11787253 ~ 11794400 (-)
LOC110523198 LOC106571668 coding upstream 178207 11808333 ~ 11811017 (-)
G367514 NA non-coding downstream 2664 11613882 ~ 11617140 (-)
G367516 NA non-coding downstream 6210 11613357 ~ 11613594 (-)
G367493 NA non-coding downstream 17680 11601868 ~ 11602124 (-)
G367474 NA non-coding downstream 43002 11576018 ~ 11576802 (-)
G367455 NA non-coding downstream 46388 11555384 ~ 11573416 (-)
G367569 NA non-coding upstream 313 11630439 ~ 11630674 (-)
G367572 NA non-coding upstream 3129 11633255 ~ 11633459 (-)
G367581 NA non-coding upstream 26991 11657117 ~ 11657459 (-)
G367582 NA non-coding upstream 27697 11657823 ~ 11658115 (-)
G367585 NA non-coding upstream 32500 11662626 ~ 11662907 (-)
G365752 NA other downstream 2429706 9189669 ~ 9190098 (-)
G364754 NA other downstream 2569096 9047542 ~ 9099000 (-)
G364322 NA other downstream 3315621 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 4893824 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 5065089 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 503926 12134052 ~ 12136790 (-)
G368921 NA other upstream 1075440 12705566 ~ 12706092 (-)
G370333 NA other upstream 2577064 14207190 ~ 14208705 (-)
G370635 NA other upstream 2797212 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 3363002 14988147 ~ 14995197 (-)

Expression


Co-expression Network