Gene
RNA
| Item | Value |
|---|---|
| gene id | lmnb1 |
| gene name | lmnb1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 11832909 ~ 11854832 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lmnb1 | Predicted to be located in intermediate filament. Human ortholog(s) of this gene implicated in adult-onset autosomal dominant demyelinating leukodystrophy and primary autosomal recessive microcephaly. Orthologous to human LMNB1 (lamin B1). |
| description |
|---|
| lamin-B1 |
| id | description |
|---|---|
| K07611 | LMNB; lamin B |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021601682.2 | False | 3780 | mRNA | 0.47 | 12 | 11832909 | 11854832 |
| XM_021601681.2 | True | 3793 | mRNA | 0.47 | 12 | 11832976 | 11854832 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| phax | phax | coding | upstream | 24833 | 11803920 ~ 11808076 (+) |
| trnaa-agc-2 | NA | coding | upstream | 231377 | 11601460 ~ 11601532 (+) |
| LOC110523192 | plk2 | coding | upstream | 319647 | 11507689 ~ 11513262 (+) |
| LOC110524952 | NA | coding | upstream | 325625 | 11502643 ~ 11507284 (+) |
| LOC110523188 | pde4d | coding | upstream | 413976 | 11026101 ~ 11418933 (+) |
| LOC110523202 | NA | coding | downstream | 64906 | 11919738 ~ 11922926 (+) |
| megf10 | megf10 | coding | downstream | 92169 | 11947001 ~ 12051563 (+) |
| prrc1 | prrc1 | coding | downstream | 202120 | 12056952 ~ 12093392 (+) |
| LOC110523206 | ctxn3 | coding | downstream | 258871 | 12113703 ~ 12134568 (+) |
| slc12a2 | nkcc1a | coding | downstream | 325936 | 12180768 ~ 12261242 (+) |
| G367670 | NA | non-coding | upstream | 14721 | 11817847 ~ 11818188 (+) |
| G367663 | LOC106571668 | non-coding | upstream | 22567 | 11809282 ~ 11810342 (+) |
| G367654 | aldh7a1 | non-coding | upstream | 27543 | 11787255 ~ 11805366 (+) |
| G367653 | NA | non-coding | upstream | 47200 | 11785204 ~ 11785709 (+) |
| G367650 | NA | non-coding | upstream | 54607 | 11777962 ~ 11778302 (+) |
| G367682 | cssa01h5orf63 | non-coding | downstream | 25497 | 11880329 ~ 11883213 (+) |
| G367809 | NA | non-coding | downstream | 70106 | 11924938 ~ 11930233 (+) |
| G367840 | NA | non-coding | downstream | 138835 | 11993667 ~ 11994319 (+) |
| G367867 | NA | non-coding | downstream | 216581 | 12071413 ~ 12147440 (+) |
| G367933 | NA | non-coding | downstream | 321803 | 12176635 ~ 12176853 (+) |
| G366973 | NA | other | upstream | 404199 | 11425642 ~ 11428710 (+) |
| G366748 | NA | other | upstream | 855757 | 10976682 ~ 10977152 (+) |
| G365197 | NA | other | upstream | 1983755 | 9848703 ~ 9849154 (+) |
| G364850 | NA | other | upstream | 2603678 | 9228838 ~ 9229231 (+) |
| cdc42se2 | cdc42se2 | other | upstream | 2986793 | 8775134 ~ 8849107 (+) |
| G367684 | NA | other | downstream | 23497 | 11878329 ~ 11880035 (+) |
| G368440 | NA | other | downstream | 1253864 | 13108696 ~ 13109134 (+) |
| G369763 | NA | other | downstream | 1910415 | 13765247 ~ 13769296 (+) |
| G370360 | NA | other | downstream | 2400971 | 14255803 ~ 14259133 (+) |
| G370382 | smarcb1 | other | downstream | 2466272 | 14321104 ~ 14325895 (+) |
