c5h5orf63 (cssa01h5orf63)


Basic Information

Item Value
gene id c5h5orf63
gene name cssa01h5orf63
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11880306 ~ 11884575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601685.2
CAGCTCACCAACCATCAGCTCTGGACAGACAACACACTTTCACTCAGAAATAAACAGACAATGCATTTGGTCTTGCCGAGGACTCTCCACAGGACAAAGAGTTCTGCTCATCTGCTTAGAAGACTCTTCTCCCAAAAGTACTTACCTACTTTAACGCTTTTTACCAAGGATCCATGCCCATTGTGTGATGAAGCAAAAGACGTCCTTGAACCATACAAACACAGGTATATTTTTCTGCAGGTAGATATCACACTGCCGGAGAACAAAATTTGGTGGGACAGATACAAATACGACATCCCAGTCTTCCATCTGAATGGACAGTTTCTAATGATGCACAGAGTTAGCACTTCACTCCTGGAGAAACGGTTGGCTGAAGTGGATGAAGAACAACAATAAAATTACTTTGCAATAGTGTAGCCTACTTAAAGCTAGAATCCAGGTCACCCCACCTGTGTTTTGGTAAAGAGCTGAGGGATGGGCACTATAACCACACTCAAATTCATGGACAGAGATATGGATGCAAGGTCAGACCATGCATGATATTAAAATTATAGTttgaaccatt
>XM_021601683.2
GTAAAATGACAGTCAACCAATAGGTATCACCTACATTTGTGTTCCTTTTTCCTCTGTTTTGTCACGCCTGGTTGTCCTCTCATAGACAGACAATGCATTTGGTCTTGCCGAGGACTCTCCACAGGACAAAGAGTTCTGCTCATCTGCTTAGAAGACTCTTCTCCCAAAAGTACTTACCTACTTTAACGCTTTTTACCAAGGATCCATGCCCATTGTGTGATGAAGCAAAAGACGTCCTTGAACCATACAAACACAGGTATATTTTTCTGCAGGTAGATATCACACTGCCGGAGAACAAAATTTGGTGGGACAGATACAAATACGACATCCCAGTCTTCCATCTGAATGGACAGTTTCTAATGATGCACAGAGTTAGCACTTCACTCCTGGAGAAACGGTTGGCTGAAGTGGATGAAGAACAACAATAAAATTACTTTGCAATAGTGTAGCCTACTTAAAGCTAGAATCCAGGTCACCCCACCTGTGTTTTGGTAAAGAGCTGAGGGATGGGCACTATAACCACACTCAAATTCATGGACAGAGATATGGATGCAAGGTCAGACCATGCATGATATTAAAATTATAGTttgaaccatt
>TU417961
GTTTTGTCACGCCTGGTTGTCCTCTCATAGACAATGCATTTGGTCTTGCCGAGGACTCTCCACAGGACAAAGAGTTCTGCTCATCTGCTTAGAAGACTCTTCTCCCAAAAGATCCATGCCCATTGTGTGATGAAGCAAAAGACGTCCTTGAACCATACAAACACAGGATATCACACTGCCGGAGAACAAAATTTGGTGGGACAGATACAAATACGACATCCCAGTCTTCCATCTGAATGGACAGTTTCTAATGATGCACAGAGTTAGCACTTCACTCCTGGAGAAACGGTTGGCTGAAGTGGATGAAGAACAACAATAAAATTACTTTGCAATAGTGTAGCCTACTTAAAGCTAGAATCCAGGTCACCCCACCTGTGTTTTGGTAAAGAGCTGAGGGATGGGCACTATAACCACACTCAAATTCATGGACAGAGATATGGATGCAAGGTCAGACCATGCATGATATTAAAATTATAGTttga

Function

NR:

description
glutaredoxin-like protein YDR286C homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601685.2 False 565 mRNA 0.42 4 11880306 11883785
XM_021601683.2 False 597 mRNA 0.42 4 11880306 11884575
TU417961 True 482 lncRNA 0.43 4 11880312 11884520

Neighbor

gene id symbol gene type direction distance location
marchf3 march3 coding downstream 2305 11856300 ~ 11878001 (-)
LOC110523198 LOC106571668 coding downstream 69289 11808333 ~ 11811017 (-)
aldh7a1 aldh7a1 coding downstream 85906 11787253 ~ 11794400 (-)
LOC110523196 LOC106571245 coding downstream 93064 11748457 ~ 11787242 (-)
ajm1 LOC106571253 coding downstream 182963 11667973 ~ 11697343 (-)
LOC110523205 LOC106603399 coding upstream 232345 12116920 ~ 12119545 (-)
LOC110523212 LOC106571134 coding upstream 381418 12265993 ~ 12281595 (-)
LOC110523211 LOC106571125 coding upstream 399580 12284155 ~ 12289326 (-)
LOC110523214 NA coding upstream 410314 12294889 ~ 12297815 (-)
LOC110523209 LOC106571116 coding upstream 418253 12302828 ~ 12313482 (-)
G367755 NA non-coding downstream 49744 11830363 ~ 11830562 (-)
G367728 NA non-coding downstream 110560 11769542 ~ 11769746 (-)
G367725 NA non-coding downstream 117722 11762370 ~ 11762584 (-)
G367723 NA non-coding downstream 119652 11760451 ~ 11760654 (-)
G368541 NA non-coding upstream 109530 11994105 ~ 11995184 (-)
G368577 NA non-coding upstream 172460 12057035 ~ 12057985 (-)
G368587 NA non-coding upstream 181754 12066329 ~ 12149393 (-)
G368557 NA non-coding upstream 206772 12091347 ~ 12093391 (-)
G368606 NA non-coding upstream 240638 12125213 ~ 12126922 (-)
G365752 NA other downstream 2690208 9189669 ~ 9190098 (-)
G364754 NA other downstream 2829598 9047542 ~ 9099000 (-)
G364322 NA other downstream 3576123 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5154326 6562531 ~ 6726634 (-)
G363470 LOC106572095 other downstream 5325591 6543675 ~ 6554715 (-)
G368612 ctxn3 other upstream 249477 12134052 ~ 12136790 (-)
G368921 NA other upstream 820991 12705566 ~ 12706092 (-)
G370333 NA other upstream 2322615 14207190 ~ 14208705 (-)
G370635 NA other upstream 2542763 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 3108553 14988147 ~ 14995197 (-)

Expression


Co-expression Network