Gene
RNA
| Item | Value |
|---|---|
| gene id | slc12a2 |
| gene name | nkcc1a |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 12180768 ~ 12261242 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: solute carrier family 12 member 2-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:1902476 | chloride transmembrane transport | biological_process |
| GO:0006812 | cation transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0015377 | cation | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036976792.1 | False | 7096 | mRNA | 0.47 | 27 | 12180768 | 12261242 |
| XM_036976793.1 | False | 7048 | mRNA | 0.47 | 26 | 12180768 | 12261242 |
| TU418193 | True | 2892 | lncRNA | 0.37 | 1 | 12258346 | 12261237 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523206 | ctxn3 | coding | upstream | 46200 | 12113703 ~ 12134568 (+) |
| prrc1 | prrc1 | coding | upstream | 87376 | 12056952 ~ 12093392 (+) |
| megf10 | megf10 | coding | upstream | 129205 | 11947001 ~ 12051563 (+) |
| LOC110523202 | NA | coding | upstream | 257842 | 11919738 ~ 11922926 (+) |
| lmnb1 | lmnb1 | coding | upstream | 325936 | 11832909 ~ 11854832 (+) |
| LOC110523213 | LOC106571108 | coding | downstream | 55866 | 12317108 ~ 12321576 (+) |
| LOC110523216 | LOC106570966 | coding | downstream | 109668 | 12370910 ~ 12560586 (+) |
| nr5a1b | LOC106570956 | coding | downstream | 313337 | 12574579 ~ 12592217 (+) |
| psmb7 | psmb7 | coding | downstream | 365830 | 12627072 ~ 12647406 (+) |
| LOC110523223 | LOC106570883 | coding | downstream | 541590 | 12802832 ~ 12978339 (+) |
| G367934 | NA | non-coding | upstream | 2473 | 12177834 ~ 12178295 (+) |
| G367933 | NA | non-coding | upstream | 3915 | 12176635 ~ 12176853 (+) |
| G367867 | NA | non-coding | upstream | 33328 | 12071413 ~ 12147440 (+) |
| G367840 | NA | non-coding | upstream | 186449 | 11993667 ~ 11994319 (+) |
| G367809 | NA | non-coding | upstream | 250535 | 11924938 ~ 11930233 (+) |
| G367937 | NA | non-coding | downstream | 4130 | 12265372 ~ 12266052 (+) |
| G367987 | LOC106571116 | non-coding | downstream | 22997 | 12284239 ~ 12343442 (+) |
| G368039 | NA | non-coding | downstream | 107536 | 12368778 ~ 12369051 (+) |
| G368124 | NA | non-coding | downstream | 250517 | 12511759 ~ 12512508 (+) |
| G368126 | NA | non-coding | downstream | 253773 | 12515015 ~ 12519164 (+) |
| G367684 | NA | other | upstream | 300733 | 11878329 ~ 11880035 (+) |
| G366973 | NA | other | upstream | 752058 | 11425642 ~ 11428710 (+) |
| G366748 | NA | other | upstream | 1203616 | 10976682 ~ 10977152 (+) |
| G365197 | NA | other | upstream | 2331614 | 9848703 ~ 9849154 (+) |
| G364850 | NA | other | upstream | 2951537 | 9228838 ~ 9229231 (+) |
| G368440 | NA | other | downstream | 847454 | 13108696 ~ 13109134 (+) |
| G369763 | NA | other | downstream | 1504005 | 13765247 ~ 13769296 (+) |
| G370360 | NA | other | downstream | 1994561 | 14255803 ~ 14259133 (+) |
| G370382 | smarcb1 | other | downstream | 2059862 | 14321104 ~ 14325895 (+) |
| G370414 | NA | other | downstream | 2106430 | 14367672 ~ 14368161 (+) |
| G367977 | NA | non-coding | upstream | 15137 | 12242942 ~ 12243209 (+) |
| G367975 | NA | non-coding | upstream | 21037 | 12237047 ~ 12237309 (+) |
| G367969 | NA | non-coding | upstream | 32273 | 12225851 ~ 12226073 (+) |
| G367966 | NA | non-coding | upstream | 36253 | 12221861 ~ 12222093 (+) |
| G367960 | NA | non-coding | upstream | 45656 | 12212475 ~ 12212690 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| mexican tetra (Astyanax mexicanus) | G178914 | NA | non-coding | NC_035916.1 | CM008319.1 | 24767951 ~ 24819326 (-) |
