LOC110523209 (LOC106571116)


Basic Information

Item Value
gene id LOC110523209
gene name LOC106571116
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12302828 ~ 12313482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976794.1
AATGTGTGATttgatataggccaatagttttttacattttcaggGTCAAGTTTTAGGTTTTTCAAttgaggctttattactgccacttttagtgagtttggtacacatctggtgaatagcgagacgtttattatgttcaacataggagggccaaacactggaagcagctctttcagtagtgtagttggaatagggtccagtatgcaccTTGACGGTTTAGAGTTGACATCAGTTAAAAACCATTAAAACTTCCAGAAACAGTGTTGGtattgtgttattgttgttgtttttcataGGGGGTTATAATGAAAAGCATCACCAATATAGTTTTAAAAATGTAATAGTACAGTCAACAACTTGATTTAAAATGAACTTCGTTCTATCTTTGCTAATCTATTTCTATAATTAATTGTttgcattttcaataaatgtatgTTTAAGCAAGTTCAAAGTAtaattttctgattttttttttaatccagaaAATAATGTAAAGTAAAAGTCTGGAAGgagtacttttattttgaaaattaGGCGTACAGGAAGGAACTGCCGATGCTAAGTGACAGATGGCTAGCTGTTATGTGAGTGAGTCTGAGGGCAAAATGGCTACAGCTTACAATATGTTTCAGTTAGAAACAACATCTATTATGGCCGTTGTCGTCGAGACGACAATGACAGAAATGGGCAAATTTTTGACCACCGTGCCAAACTCTTACGTTTGCAATCCGGAGAGAGACCTGTGCACAATTATGAATCTGGTGACAGGGGAGGCTATTCGTAAAATTTGCCAACTATTCCTAGTGGTCTCCTCAAGTTTACAAAATGAGAACGATAAACTGAAGACCAAGGTGGAGCAGATGGATGAAGATATGAAAACCAAGGTGAAGCAGATGGATGAAGATATGAAAACCAAGGTGAAGCAGATGGATGAAGATATGAAAACCAAGGTGGAGCAGATGAATGAAGATATGAAGGCATTGACTGAGAAGGCTGAAAATTATAGAGCATCACTGGCTAAAATGCAGGCACAAGCAGAACCAAAAGGACCCACGCATATTCTGCTCAATGgaatgatttttgcaattccaCCAGTTGGTCTCTCAATGTTCTCTGGAATGACAGCGGCTTCAACATTGCCAGGGAATGTCAGTCAAGCAAACACTGTCACTAATGCGATGTCAGTCTGTGCAGGTCCTGCAAAGGTTTGCAGCAAACCCACAGAGATGTCTTCATTGGAGAATGACTCCTCTCTGGGAGACACAGATGGACTGAATACAGACCCCTCCCCAAGAGACACTGACTCCAACGTTGAGCATATGAGAGCTGCTCTGCCAGGGAGCAACGAGAGAGACGGCCATGAAAGCCAGAAAAACAGCAATACTACTAAAAGGATGCGATCCAAAGAAACCAAATGCTTCAAGTGTGATGTTTGTGAGAAGACCTTCAGCCGGAAGAACCTACTGGTACAACACAAGCTAACTCACACAAGACCCTTCAAGTGTGATGTTTGTGAAAAGACTTTCAGCAGGAAGGGGTCACTGGAAGCTCACAAGCTAATTCACACACTGGTACATCAGATGCTAATTCACACAGAAGAGAGGCCATTCACTTGTGGTCAGTGTGGCAAAACATTCAGAATGTCCAAGCAGCTTGAACATCACATGTTGCGTCACAGAGAAAAAACGTTCAGTTgcaaagtttgtggaaatgttttgTCTACCAAGAAAGATCTGAAACGACATCAGCTTGTTCATGCAGTGGAGAGACCGTTCAAGTGCCTGACTTGTGACAAGGGTTTCACATCAAGGAAACTGCTTATCGAGCACGAGAGAATCCACACCGGTGAAAAACCATACACCTGTGCTGTATGTGGGAAgagttacagacagcatggtggcCTAAATATTCATATGCGAACACATACAGGTGTACGTCCGCATTCATGTTCAGAGTGTGGTAAGGGTTTTATGACAAGCAGCAGCCTCAAAAACCACATGGTTGTTCATACAGGGGAGAAGGCATTTAAATGTGAGACCTGTGGAGCAGCTTTCGGCCATAAAGCAAACCTTCAGAGACACCAAGTTCTTCACACGGGGGAGAGACCGTACAAATGTGAAGTGTGTGGGAAAAGCTACCTTCAGTCCACTGACCTAAAAGCTCACATGCACCGTCATGGGGCAACCAAACCATTTATGTGTGACCTATGTGGGAAGACTTTTATGTACAATTTTCAAATGAGACGACACCATCTAAAATGGCACACAGCTgaaggagagaagcagagggaacgacagagaagagaaagaacgagagagagaaccgCCAGGAGAGCGGGAACCTCAACAAAGCCATTCAGTTGTGACATATGTTTGAATGGCTTCAGTTCCATGCTAACTCTGAAAAACCATCAACGAAGTCACACGGGACAAAAGCAATACTCTTGTTCCATTTGCGGAAAGAACTTTGCCTATAAAAATACTTTGGACTATCACATGAGACTTCACAGTGGAGTGAAGCCCTACGCTTGTAAATTCTGTGAAAAGACATTTGTTCTTAAGCAAGCTCTAGAAGGACATGAGCGAACCCATACAGGTGAAAAGCCCTTCAAATGCAGTTATTGTGACAAGACTTTCTCAGTCAACACCAATCTGAAAAGGCATGAGCGAgtccacacgggagagaagccatTCAAATGTGACGTCTGCGGGAGAGGTTTCAGCCAAGCCAACAACGTCAAAGCCCACATGCAAGTCCACACTGGAGTTAGGCCTTATTATTGCAAGAGATGTGGAAAGGGCTTTTCTGACATAAGACACTACAAAAACCATAGCTGTAATGGTGTGGCAGCAACACGTGATCGGTCTCGTAAATCTTCAGACCGCTCTTTCAGAAATACGAAAGGAGGTGAAGACAGCAGTGCTTGCCATAatgctgctgtgatgtcgactcaGTGATATAATCTCTATCATTCACAGTGGGGCAACTTCCTGCTTTCAGACATCAGGAACAATGGGGATGTATCTGTAGGGTTAAACGATCTGGGATGGGTTTCTGGAAAGCCTCATAGGAAATTAATGTGTGCTTTAGGAAATGAGATGAGTGCCTGCTGTAATGCTTGGAGATATTGCTGTAAGTCTTAGGGTCAATGTTCATGAGGCCAAATTCCTCAAAGACATGACTGTTTATTTCTGACAGTGTACTGAATTGTTTAAGATTTTTCCTATTTTTCATTTTATTGTGTAAATCATTAAACACTTAATTCATGTGAGTCATTCA
>XM_036976795.1
AATGTGTGATttgatataggccaatagttttttacattttcaggGTCAAGTTTTAGGTTTTTCAAttgaggctttattactgccacttttagtgagtttggtacacatctggtgaatagcgagacgtttattatgttcaacataggagggccaaacactggaagcagctctttcagtagtgtagttggaatagggtccagtatgcaccTTGACGGTTTAGAGTTGACATCAGTTAAAAACCATTAAAACTTCCAGAAACAGTGTTGGtattgtgttattgttgttgtttttcataGGGGGTTATAATGAAAAGCATCACCAATATAGTTTTAAAAATGTAATAGTACAGTCAACAACTTGATTTAAAATGAACTTCGTTCTATCTTTGCTAATCTATTTCTATAATTAATTGTttgcattttcaataaatgtatgTTTAAGCAAGTTCAAAGTAtaattttctgattttttttttaatccagaaAATAATGTAAAGTAAAAGTCTGGAAGgagtacttttattttgaaaattaGGCGTACAGGAAGGAACTGCCGATGCTAAGTGACAGATGGCTAGCTGTTATGTGAGTGAGTCTGAGGGCAAAATGGCTACAGCTTACAATATGTTTCAGTTAGAAACAACATCTATTATGGCCGTTGTCGTCGAGACGACAATGACAGAAATGGGCAAATTTTTGACCACCGTGCCAAACTCTTACGTTTGCAATCCGGAGAGAGACCTGTGCACAATTATGAATCTGGTGACAGGGGAGGCTATTCGTAAAATTTGCCAACTATTCCTAGTGGTCTCCTCAAGTTTACAAAATGAGAACGATAAACTGAAGACCAAGGTGGAGCAGATGGATGAAGATATGAAAACCAAGGTGAAGCAGATGGATGAAGATATGAAAACCAAGGTGGAGCAGATGAATGAAGATATGAAGGCATTGACTGAGAAGGCTGAAAATTATAGAGCATCACTGGCTAAAATGCAGGCACAAGCAGAACCAAAAGGACCCACGCATATTCTGCTCAATGgaatgatttttgcaattccaCCAGTTGGTCTCTCAATGTTCTCTGGAATGACAGCGGCTTCAACATTGCCAGGGAATGTCAGTCAAGCAAACACTGTCACTAATGCGATGTCAGTCTGTGCAGGTCCTGCAAAGGTTTGCAGCAAACCCACAGAGATGTCTTCATTGGAGAATGACTCCTCTCTGGGAGACACAGATGGACTGAATACAGACCCCTCCCCAAGAGACACTGACTCCAACGTTGAGCATATGAGAGCTGCTCTGCCAGGGAGCAACGAGAGAGACGGCCATGAAAGCCAGAAAAACAGCAATACTACTAAAAGGATGCGATCCAAAGAAACCAAATGCTTCAAGTGTGATGTTTGTGAGAAGACCTTCAGCCGGAAGAACCTACTGGTACAACACAAGCTAACTCACACAAGACCCTTCAAGTGTGATGTTTGTGAAAAGACTTTCAGCAGGAAGGGGTCACTGGAAGCTCACAAGCTAATTCACACACTGGTACATCAGATGCTAATTCACACAGAAGAGAGGCCATTCACTTGTGGTCAGTGTGGCAAAACATTCAGAATGTCCAAGCAGCTTGAACATCACATGTTGCGTCACAGAGAAAAAACGTTCAGTTgcaaagtttgtggaaatgttttgTCTACCAAGAAAGATCTGAAACGACATCAGCTTGTTCATGCAGTGGAGAGACCGTTCAAGTGCCTGACTTGTGACAAGGGTTTCACATCAAGGAAACTGCTTATCGAGCACGAGAGAATCCACACCGGTGAAAAACCATACACCTGTGCTGTATGTGGGAAgagttacagacagcatggtggcCTAAATATTCATATGCGAACACATACAGGTGTACGTCCGCATTCATGTTCAGAGTGTGGTAAGGGTTTTATGACAAGCAGCAGCCTCAAAAACCACATGGTTGTTCATACAGGGGAGAAGGCATTTAAATGTGAGACCTGTGGAGCAGCTTTCGGCCATAAAGCAAACCTTCAGAGACACCAAGTTCTTCACACGGGGGAGAGACCGTACAAATGTGAAGTGTGTGGGAAAAGCTACCTTCAGTCCACTGACCTAAAAGCTCACATGCACCGTCATGGGGCAACCAAACCATTTATGTGTGACCTATGTGGGAAGACTTTTATGTACAATTTTCAAATGAGACGACACCATCTAAAATGGCACACAGCTgaaggagagaagcagagggaacgacagagaagagaaagaacgagagagagaaccgCCAGGAGAGCGGGAACCTCAACAAAGCCATTCAGTTGTGACATATGTTTGAATGGCTTCAGTTCCATGCTAACTCTGAAAAACCATCAACGAAGTCACACGGGACAAAAGCAATACTCTTGTTCCATTTGCGGAAAGAACTTTGCCTATAAAAATACTTTGGACTATCACATGAGACTTCACAGTGGAGTGAAGCCCTACGCTTGTAAATTCTGTGAAAAGACATTTGTTCTTAAGCAAGCTCTAGAAGGACATGAGCGAACCCATACAGGTGAAAAGCCCTTCAAATGCAGTTATTGTGACAAGACTTTCTCAGTCAACACCAATCTGAAAAGGCATGAGCGAgtccacacgggagagaagccatTCAAATGTGACGTCTGCGGGAGAGGTTTCAGCCAAGCCAACAACGTCAAAGCCCACATGCAAGTCCACACTGGAGTTAGGCCTTATTATTGCAAGAGATGTGGAAAGGGCTTTTCTGACATAAGACACTACAAAAACCATAGCTGTAATGGTGTGGCAGCAACACGTGATCGGTCTCGTAAATCTTCAGACCGCTCTTTCAGAAATACGAAAGGAGGTGAAGACAGCAGTGCTTGCCATAatgctgctgtgatgtcgactcaGTGATATAATCTCTATCATTCACAGTGGGGCAACTTCCTGCTTTCAGACATCAGGAACAATGGGGATGTATCTGTAGGGTTAAACGATCTGGGATGGGTTTCTGGAAAGCCTCATAGGAAATTAATGTGTGCTTTAGGAAATGAGATGAGTGCCTGCTGTAATGCTTGGAGATATTGCTGTAAGTCTTAGGGTCAATGTTCATGAGGCCAAATTCCTCAAAGACATGACTGTTTATTTCTGACAGTGTACTGAATTGTTTAAGATTTTTCCTATTTTTCATTTTATTGTGTAAATCATTAAACACTTAATTCATGTGAGTCATTCA
>XM_036976796.1
AATGTGTGATttgatataggccaatagttttttacattttcaggGTCAAGTTTTAGGTTTTTCAAttgaggctttattactgccacttttagtgagtttggtacacatctggtgaatagcgagacgtttattatgttcaacataggagggccaaacactggaagcagctctttcagtagtgtagttggaatagggtccagtatgcaccTTGACGGTTTAGAGTTGACATCAGTTAAAAACCATTAAAACTTCCAGAAACAGTGTTGGtattgtgttattgttgttgtttttcataGGGGGTTATAATGAAAAGCATCACCAATATAGTTTTAAAAATGTAATAGTACAGTCAACAACTTGATTTAAAATGAACTTCGTTCTATCTTTGCTAATCTATTTCTATAATTAATTGTttgcattttcaataaatgtatgTTTAAGCAAGTTCAAAGTAtaattttctgattttttttttaatccagaaAATAATGTAAAGTAAAAGTCTGGAAGgagtacttttattttgaaaattaGGCGTACAGGAAGGAACTGCCGATGCTAAGTGACAGATGGCTAGCTGTTATGTGAGTGAGTCTGAGGGCAAAATGGCTACAGCTTACAATATGTTTCAGTTAGAAACAACATCTATTATGGCCGTTGTCGTCGAGACGACAATGACAGAAATGGGCAAATTTTTGACCACCGTGCCAAACTCTTACGTTTGCAATCCGGAGAGAGACCTGTGCACAATTATGAATCTGGTGACAGGGGAGGCTATTCGTAAAATTTGCCAACTATTCCTAGTGGTCTCCTCAAGTTTACAAAATGAGAACGATAAACTGAAGACCAAGGTGGAGCAGATGGATGAAGATATGAAAACCAAGGTGAAGCAGATGGATGAAGATATGAAAACCAAGGTGAAGCAGATGGATGAAGATATGAAAACCAAGGTGGAGCAGATGAATGAAGATATGAAGGCATTGACTGAGAAGGCTGAAAATTATAGAGCATCACTGGCTAAAATGCAGGCACAAGCAGAACCAAAAGGACCCACGCATATTCTGCTCAATGgaatgatttttgcaattccaCCAGTTGGTCCTGCAAAGGTTTGCAGCAAACCCACAGAGATGTCTTCATTGGAGAATGACTCCTCTCTGGGAGACACAGATGGACTGAATACAGACCCCTCCCCAAGAGACACTGACTCCAACGTTGAGCATATGAGAGCTGCTCTGCCAGGGAGCAACGAGAGAGACGGCCATGAAAGCCAGAAAAACAGCAATACTACTAAAAGGATGCGATCCAAAGAAACCAAATGCTTCAAGTGTGATGTTTGTGAGAAGACCTTCAGCCGGAAGAACCTACTGGTACAACACAAGCTAACTCACACAAGACCCTTCAAGTGTGATGTTTGTGAAAAGACTTTCAGCAGGAAGGGGTCACTGGAAGCTCACAAGCTAATTCACACACTGGTACATCAGATGCTAATTCACACAGAAGAGAGGCCATTCACTTGTGGTCAGTGTGGCAAAACATTCAGAATGTCCAAGCAGCTTGAACATCACATGTTGCGTCACAGAGAAAAAACGTTCAGTTgcaaagtttgtggaaatgttttgTCTACCAAGAAAGATCTGAAACGACATCAGCTTGTTCATGCAGTGGAGAGACCGTTCAAGTGCCTGACTTGTGACAAGGGTTTCACATCAAGGAAACTGCTTATCGAGCACGAGAGAATCCACACCGGTGAAAAACCATACACCTGTGCTGTATGTGGGAAgagttacagacagcatggtggcCTAAATATTCATATGCGAACACATACAGGTGTACGTCCGCATTCATGTTCAGAGTGTGGTAAGGGTTTTATGACAAGCAGCAGCCTCAAAAACCACATGGTTGTTCATACAGGGGAGAAGGCATTTAAATGTGAGACCTGTGGAGCAGCTTTCGGCCATAAAGCAAACCTTCAGAGACACCAAGTTCTTCACACGGGGGAGAGACCGTACAAATGTGAAGTGTGTGGGAAAAGCTACCTTCAGTCCACTGACCTAAAAGCTCACATGCACCGTCATGGGGCAACCAAACCATTTATGTGTGACCTATGTGGGAAGACTTTTATGTACAATTTTCAAATGAGACGACACCATCTAAAATGGCACACAGCTgaaggagagaagcagagggaacgacagagaagagaaagaacgagagagagaaccgCCAGGAGAGCGGGAACCTCAACAAAGCCATTCAGTTGTGACATATGTTTGAATGGCTTCAGTTCCATGCTAACTCTGAAAAACCATCAACGAAGTCACACGGGACAAAAGCAATACTCTTGTTCCATTTGCGGAAAGAACTTTGCCTATAAAAATACTTTGGACTATCACATGAGACTTCACAGTGGAGTGAAGCCCTACGCTTGTAAATTCTGTGAAAAGACATTTGTTCTTAAGCAAGCTCTAGAAGGACATGAGCGAACCCATACAGGTGAAAAGCCCTTCAAATGCAGTTATTGTGACAAGACTTTCTCAGTCAACACCAATCTGAAAAGGCATGAGCGAgtccacacgggagagaagccatTCAAATGTGACGTCTGCGGGAGAGGTTTCAGCCAAGCCAACAACGTCAAAGCCCACATGCAAGTCCACACTGGAGTTAGGCCTTATTATTGCAAGAGATGTGGAAAGGGCTTTTCTGACATAAGACACTACAAAAACCATAGCTGTAATGGTGTGGCAGCAACACGTGATCGGTCTCGTAAATCTTCAGACCGCTCTTTCAGAAATACGAAAGGAGGTGAAGACAGCAGTGCTTGCCATAatgctgctgtgatgtcgactcaGTGATATAATCTCTATCATTCACAGTGGGGCAACTTCCTGCTTTCAGACATCAGGAACAATGGGGATGTATCTGTAGGGTTAAACGATCTGGGATGGGTTTCTGGAAAGCCTCATAGGAAATTAATGTGTGCTTTAGGAAATGAGATGAGTGCCTGCTGTAATGCTTGGAGATATTGCTGTAAGTCTTAGGGTCAATGTTCATGAGGCCAAATTCCTCAAAGACATGACTGTTTATTTCTGACAGTGTACTGAATTGTTTAAGATTTTTCCTATTTTTCATTTTATTGTGTAAATCATTAAACACTTAATTCATGTGAGTCATTCA

Function

NR:

description
PREDICTED: zinc finger protein 665-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976794.1 False 3279 mRNA 0.42 4 12302828 12313482
XM_036976795.1 False 3246 mRNA 0.42 5 12302828 12313482
XM_036976796.1 True 3183 mRNA 0.42 3 12302828 12313482

Neighbor

gene id symbol gene type direction distance location
LOC110523214 NA coding downstream 5013 12294889 ~ 12297815 (-)
LOC110523211 LOC106571125 coding downstream 13502 12284155 ~ 12289326 (-)
LOC110523212 LOC106571134 coding downstream 21233 12265993 ~ 12281595 (-)
LOC110523205 LOC106603399 coding downstream 183283 12116920 ~ 12119545 (-)
c5h5orf63 cssa01h5orf63 coding downstream 418253 11880306 ~ 11884575 (-)
LOC110523210 LOC106571086 coding upstream 11126 12324608 ~ 12340647 (-)
LOC110523208 LOC106571116 coding upstream 27524 12341006 ~ 12349803 (-)
LOC118964561 LOC106571021 coding upstream 39933 12353415 ~ 12360161 (-)
LOC110523215 znf79 coding upstream 49190 12362672 ~ 12365603 (-)
nek6 LOC106570951 coding upstream 334448 12647930 ~ 12734470 (-)
G368704 NA non-coding downstream 41593 12258015 ~ 12261235 (-)
G368714 NA non-coding downstream 49395 12252379 ~ 12253433 (-)
G368715 NA non-coding downstream 54847 12247147 ~ 12247981 (-)
G368710 NA non-coding downstream 58618 12241305 ~ 12244210 (-)
G368854 psmb7 non-coding upstream 332499 12645981 ~ 12647401 (-)
G368910 NA non-coding upstream 364210 12677692 ~ 12684042 (-)
G368976 NA non-coding upstream 495285 12808767 ~ 12809226 (-)
G369075 NA non-coding upstream 604233 12917715 ~ 12918632 (-)
G369121 NA non-coding upstream 687345 13000827 ~ 13001212 (-)
G368612 ctxn3 other downstream 166038 12134052 ~ 12136790 (-)
G365752 NA other downstream 3112730 9189669 ~ 9190098 (-)
G364754 NA other downstream 3252120 9047542 ~ 9099000 (-)
G364322 NA other downstream 3998645 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5576848 6562531 ~ 6726634 (-)
G368921 NA other upstream 392084 12705566 ~ 12706092 (-)
G370333 NA other upstream 1893708 14207190 ~ 14208705 (-)
G370635 NA other upstream 2113856 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 2679646 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2809993 15123475 ~ 15124789 (-)

Expression


Co-expression Network