LOC110523213 (LOC106571108)


Basic Information

Item Value
gene id LOC110523213
gene name LOC106571108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12317108 ~ 12321576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976808.1
GTGTTTAGGGCCCTCATGGCTAGAGCCCGCCCTGCACACAAGGCTATAGAGACAGTGATGATTCGTTAGATCACTCTAAAATCAAACAAACACAGCACATGACAGATGTCACAGCTCAAACATGAGTTCCCTGGATAATCAGATGGGTGCTAACAGCAATGACCTGAGACTGGTGTTGGTCGGCCTGAGTGGAGTGGGGAAGAGTGCAGCTGGGAACACCATTCTGGGCCAAAAGGTGTTTGATTCCAGAATCAGTTTCAAAACAGTAACACTGAAGAGTGAGAGACAAGAAGGAGAGGTGTGTGGGAAGAGAGTGATAGTAGTGGACACTCCAGGTCTGTCCAACAGTGACCTCTCTGAGGAGGAAGTGAGAGGGGAGATGAACAGGGCCGTGACTCTGTGTGAACCAGGTccccatgccttcctcctggtgATTCAGCTGGGTCGCTTCACAGAACAAGAGAAGAGCGTAATGAAGACACTCACTGAGCTTTTATCTGCCAACATAGATGGAGACACGATGGTGCTCTTCACTTATGGGGAGAGACTGGAAGACACAACTATAGATCAGTTCATCCACGAGGATAGCAATCTGAAGAAGCTGGTTAAGAAATGCAGGGGTGGATACCACGTGTTCAAAAACAATGACACCAGCAACAACAATCAGGTTAGAGAGCTTTTAGAAAAAATAGAAACCAGACTACAGAAAAAGCAGAAAAGCTGGTCATGGTACTGGAAAGGGGCAGCTGGTTGCTTTTTCGTCATTGCAGCAGTGATGATAGTAAAAGTGTTGTTAAAAAGGTTACGAACACGTCCCCCACACATCCCTCCTGTCTCTGCCACCTGTCCTGTCCCTGACATAGCTCCTCCTGTCCCTGACATGGTCCCTCATGTCCCTGACATGGTCTCTTCTGTCCCTGACATGGTCTCTCCTGTCCCTGACATGGTCTCTCCTGTCCCTGACATGGTCTCTTCTGTCCCTGACATGGTCTCTCCTGTCCCTGACATGGTCACTCCTGTCCCTGACATGGTCTCTTCTGTCCCTGACATGGTCTCTTCTGTCCCTGACATGGTCTCTCCTGTCCCTGACATGGTCTCTTCTGTCCCTGCCACCTGTCCTGTCCCTGACATGGTCCCTTCTGTCCCTGACATGGTCTCTTCTGTCCCTGCCACCTGTCCTGTCCCTGACATGGTCCCTTCTGTCCCTGACATGGTCTCTTCTCTCACTGACATCGTCCCTCCTGTTCCTGACATGATCCCTCCTGTCCCTGACATAGTCTCTTCTGTTCCTGACATGGACCCTCCTGTCCCTGCCACTGTCCCCCCTGTTCGTGAGTCAATTTGGGAAATGGTgaagtcaaacaacaacattattTTCACAGCGGGAGTAGGACTGACTCTATTGGTCATCATAAGAAAAATAATTAGGAAATAATGAGAGGTTGGTTGAATGGGACATAATTTCCCACATCTGTGAGTGCCAAATTAAATGAATGCTACAATTATACACGCGTTAACTCTTTTTGACATTTTAGAACATTTCTTATTGAATGTTAAGAGAATGGGTGACAGGTTGTATTTGAAGAATCACAATAAAATATAAACATGCGAA
>XM_021601713.2
GGCTAGAGCCCGCCCTGCACACAAGGCTATAGAGACAGTGATGATTCGTTAGATCACTCTAAAATCAAACAAACACAGCACATGACAGATGTCACAGCTCAAACATGAGTTCCCTGGATAATCAGATGGAGCAGCCAAAGAAAAATGATGAGCTGAGGATTGTTTTGGTTGggaagactggagttgggaaGAGTGCAGTAGGAAACACCATCTTGGGAGAAACCACTTTTACATCTAAGTTATCTTCCTCCTCTGTGACATTGGTGTGTGACAAAAACAAAAGGAAAGTGGATGGGCAAATGGTTGCTGTCATCGACACTCCAGGCTTGTTTGACACCCAATCTACCCAAGAGGAGATACTGAACGAGATCAAAATGTGCATCACTTTTGCTGCTCCTGGTCCCCATGCATTCCTGATTGTGATCCAGCTGGGTAGATACACAAACGAGGAGAAAGAGGCGGTGAACATCCTCCAGCAGATCTTTGGCAAAGAGGCAGAAAAGTACACCATAGTGCTTTTCACTCGTGAAGATGATAGAGGGAAAAAGTATTGAATCATTCATTATGGGAAGTGAAGTCTGTGCAGATTTAAAAACCTTGGTCTTTGAAGCATGTCATGGGAGATATCATGCCTTCAACAACAGAGACCGCAATAATCGCTCTCAGGTATCTAAGCTGCTTGAGAAGATCAACAACATGACCATAACGGATGGAAGACAGCACTACTACACCAACAAAATGCTCCAAGAGGCTGAGAGAGCAATTGAGGAGGAGAAAGATAGGATTCTGAAAGAGAAAGAAGAGCAGACAAGGAGTGAAATGAAAGCACTGGAAAATAAATATGAAGGACCCGCTCTGGAGGAAGCGAAGAAGAAGTTGATGCAAGAAATGGAGAACGACGCAAGATATATAGCTGAAAGAAGAAATCAAGTTCTGAAAATAGCAGGCTTCACTCTTGCTGGAGCGGCTtctgttggagc

Function

NR:

description
GTPase IMAP family member 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976808.1 False 1612 mRNA 0.48 2 12317108 12321576
XM_021601713.2 True 980 mRNA 0.44 2 12317125 12319211

Neighbor

gene id symbol gene type direction distance location
slc12a2 nkcc1a coding upstream 55866 12180768 ~ 12261242 (+)
LOC110523206 ctxn3 coding upstream 182540 12113703 ~ 12134568 (+)
prrc1 prrc1 coding upstream 223716 12056952 ~ 12093392 (+)
megf10 megf10 coding upstream 265545 11947001 ~ 12051563 (+)
LOC110523202 NA coding upstream 394182 11919738 ~ 11922926 (+)
LOC110523216 LOC106570966 coding downstream 49334 12370910 ~ 12560586 (+)
nr5a1b LOC106570956 coding downstream 253003 12574579 ~ 12592217 (+)
psmb7 psmb7 coding downstream 305496 12627072 ~ 12647406 (+)
LOC110523223 LOC106570883 coding downstream 481256 12802832 ~ 12978339 (+)
ptpa ptpa coding downstream 768151 13089727 ~ 13107713 (+)
G367937 NA non-coding upstream 51056 12265372 ~ 12266052 (+)
G367977 NA non-coding upstream 73899 12242942 ~ 12243209 (+)
G367975 NA non-coding upstream 79799 12237047 ~ 12237309 (+)
G367969 NA non-coding upstream 91035 12225851 ~ 12226073 (+)
G368039 NA non-coding downstream 47202 12368778 ~ 12369051 (+)
G368124 NA non-coding downstream 190183 12511759 ~ 12512508 (+)
G368126 NA non-coding downstream 193439 12515015 ~ 12519164 (+)
G368216 NA non-coding downstream 358665 12680241 ~ 12683744 (+)
G368281 NA non-coding downstream 460664 12782240 ~ 12784546 (+)
G367684 NA other upstream 437073 11878329 ~ 11880035 (+)
G366973 NA other upstream 888398 11425642 ~ 11428710 (+)
G366748 NA other upstream 1339956 10976682 ~ 10977152 (+)
G365197 NA other upstream 2467954 9848703 ~ 9849154 (+)
G364850 NA other upstream 3087877 9228838 ~ 9229231 (+)
G368440 NA other downstream 787120 13108696 ~ 13109134 (+)
G369763 NA other downstream 1443671 13765247 ~ 13769296 (+)
G370360 NA other downstream 1934227 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 1999528 14321104 ~ 14325895 (+)
G370414 NA other downstream 2046096 14367672 ~ 14368161 (+)

Expression


Co-expression Network