LOC118964561 (LOC106571021)


Basic Information

Item Value
gene id LOC118964561
gene name LOC106571021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12353415 ~ 12360161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976797.1
gggggagggatcctgagaggagtggtgtgagtagtagatctgtaccagtacagagggataggccaataAGTGATATATTTCGGTAAGATTGGATTTTttgcatttatagcaatggttatcaactgtactgcagggatagAATGTAAGTCTCCGAAAATGTAGGTTTTGGTGGCAGAtgcagagaagtatttgggtGTGCAAGACTTGACATCAGACGAATTACAGGGTGTGTTAAGCAGTGGTGCCCATCCTTTCAGGTTGTTGGCCTAAGGTAGGACTAAATAGATTTAGAAATAGTGGAGTAGAATGgtgttatttttatatttttctgaGTGTAGTGTTAATGGTAGggtctgtatttatttattaaaaaattcaagcaaagtataagggagttgtactccagtctagtagatggcggtaatgcaacatttattggataccaACCGCCGTTAAACGTCATCGAAGAATCCTAGTTTCTTCAAAAATGTCTGTTATTGCCTGCTTCACAGCGGTATCACACAAAAGATGCtagctattttattttatttgaacgtTACGTGAATGAGTCTGAGGGCAAAATGTCAACTTACAATATGTTCCAGTCAGAAACAACATCGATTATGGCTTTTGTCGTCGAGACTGTAATGAAAGAAATTAGCCATCTTTCAAACGCGCAACACTCGGACGCTAACGACTGCAGTAAACCGGAGAGAGAGCTTTGCACCATGATGAATCTGGTGATGGGGGAGGCTATTCGTAAAATCTGCCAACTATTCCTAGTGACCTCCTCACGTTTACAAAATGAAAATGGGAAACTGAAAACCAAGGTGGAGCAGATGGAGGAAGATATGAAGACAATAACTGAGAAGGCTGAACATTATAGAATGTCTCTAGCTAAAGTACAGGCACAAGCGGAACCGAAAGGACCCACCCATGTTCTGCACAATGGAATCATCTTTGCAATTAAACCACTTGATCTCCCAGTGTTGCCTGGAATGACAGCGGGTTCAGCTTTGCCAGGGAATGTCAGTCAGGCGAACCCTGTCACTAACGCAGCATCAGTCCGTGCAGGTCCTGCAAAAGTTTGCAGTAAACCCACAGAGACGTCTTCATTGGAGAATGACTCCTCTCTGGGAGACACAGATGGACTGAATACAGACCCCTCCCCAAGAGACACTGAATCCAACGTTGAGCATATGAGAGCTGCTCTGCCAGGGAGCAACGAGAGAGACGGCCATGAAAGCCAGAAAAACAGCAATACTACTAAAGGGACACGATCCAAAGAAACCAAACGCTTCAAGTGTGATATTTGTGAGAAGACCTTCAGCAAGAAAGAGTTGTTGAGAGTTCACAAGTTAACACATACAAGACCCTTCAAGTGTGATGTGTGTCAGAAGACCTTCACCAGGAAGGGGTTACTGGAAGCTCACAAGCTAAGTCACACAAGACCCTTCAAGTGTGATGTTTGTGACAAGGTCTTCAACCTGAACCGCTTGCTGGTACGTCACAAGctaattcacacaggagagaggccaTTCGCTTGTGGTCAGTGTGGCAAAACATTCAGAATGTCCAAGCAGCTTGAACATCACATGTTGCGTCACAGAGAAAAAACGTTCAGTTGCAAAGTTTGCGACAGTATATTCCCTGCCAAGAAAGATCTGACACAACATCGGCTTGTTCATGCTTTGGAGAGACCGTTCAAGTGCCTGACTTGTGGAAAGGGTTTCACATCAAGGGCCGCGCTTATGGGGCACGAGAGAATCCACACCGGTGAAAAACCACACAGCTGTGCTGAATGTGGGAAGAGTTACAGACTGTCTTATGACCTAAGTATTCATATGCGAAGACATACAGGTGAACGTCCGCACTTATGCTCAGAGTGTGGTAAGAGCTTTATAACTAAATCCAGCCTTGAAAACCACAAGGTAAtccatacaggggagaagccatttAAATGTGAGACCTGTGGAGCTGCTTTTGGCCATAAAGCAAACCTTCAGAGACACCAAGTTCTTCACACAGGGGAGAGACCGTACAAATGTAAAGTGTGTGGGAAAAGCTACCTTCAGTCCACTGACCTAAAAGCTCACATGCACCGTCATGGAGCAACCAAACCATTTATGTGTGACCTATGTGGAAAGACTTTCATTTACAATTACCAAATGAGACAGCACAATATAAAATGGCACACAGCTGAAGGAGAGAACCTTCCTGGGGGAGTTGGAACCTCAACAAAGCCATTCAGTTGTGATGTATGTTTGAACGGCTTCAGCTCCATGCTAACTCTGAAAAAGCATCaagaaattcacacaggacaaaaTCAATACTCTTGTTCTGTTTGCGGGAAAACCTTTGCCTATAAAAATACTTTGGACTATCACATGAAACTTCACAGTGGAGAGAAGCCCCATGAATGTAAATACTGTGGAAGAAAATTCATTCTTAAGCAAGCTCTCAAAGGACATGAGCGAACCCATACAGGTGAAAAGCCCTTCAAATGCGGTTATTGTGACAAGACTTTCTCAGTCAACAGCAATCTCAAAAGGCATGAGCGAgtccacacgggagagaagccatTCAAATGTGACGTCTGCGGGAGAGGTTTCAGCCAAGCCAACAACGTCAAAGCCCACATGCAAGTCCACACTGGAGTTAGGCCTTATTATTGCAAGAGATGTGGAAAGGGCTTTTCTGACATAAGACACTACAAAAACCATAGCTGTAATGGTGTGGCAGTGACACGCAATCAGTCTCGTAAACCTTCTGACCGCACTTTCAGAAGTAGGAAAGGAGGTAGAGACAGGAGTGCTTGCCATAatgctgctgtgatgtcgactcaGTGATATATTCTTGATCATTCACAGTGGGGCAACTTCCTGCTTTCAGACATCAGGAACAACATGGATGTATTCAGCAGGGTGAGAAGTTCTCGGGTGAGTTTCTGGAAAGCCTCGTAGGAAATGAGAGGCATATCTGCCGTAATGCTTGGAGATTTTGCTATAAATCTTAGTCAATGTTCATGAGCCCACATTATCATGGAGACGTTGTATATTTCTGACTGTGTTCAATCATttacaatgtgtttttttttctgttgTGTAAATCCTTAAACACCTAATTTATGTGAAAATATCAGAACTACACATTAATACTTTGTCCATCAGCTACATAGGATCGCTCAATTAGTTGTTCAGGTGATTGTCCTGATTGGGCAAGAATTTTGAAGGAATTCTTGTTTTTAAAGGTCCAATGTTGTTTCTATGTCAATATCATATAATTTCTTGGTAACAATTGAAGTACCTCATTTTgcttgttttcaattaaaatggtcaaaaatatattttaaaatcac
>XM_036976798.1
ATGAAGCAAGACGATGGATGGTGGTTGGAAGAGCGCGCTTGTTTGAAAATGGAAAAGTGTTGCGGTAGCTTTTGATAAAGAAGAACATCAAGATGAAGCAGCTGCTTTATAAGTGGGATACACTGTTAAATGCTACATCCAGAGGGGTTTGTGCTGATTGTACAGAGATTGTGACAGCCGGTTAAATGGCATCCCTTGAGAAGGCAAGAACAAGACGTGTCAGGAgaagtgcagtattatcataaggagacgTATACTTGGAATAcgaaggaggaatggagggaaaaagCGAGGCAGAGGAGGtctgagggagaaagaggCTTTGCACCATGATGAATCTGGTGATGGGGGAGGCTATTCGTAAAATCTGCCAACTATTCCTAGTGACCTCCTCACGTTTACAAAATGAAAATGGGAAACTGAAAACCAAGGTGGAGCAGATGGAGGAAGATATGAAGACAATAACTGAGAAGGCTGAACATTATAGAATGTCTCTAGCTAAAGTACAGGCACAAGCGGAACCGAAAGGACCCACCCATGTTCTGCACAATGGAATCATCTTTGCAATTAAACCACTTGATCTCCCAGTGTTGCCTGGAATGACAGCGGGTTCAGCTTTGCCAGGGAATGTCAGTCAGGCGAACCCTGTCACTAACGCAGCATCAGTCCGTGCAGGTCCTGCAAAAGTTTGCAGTAAACCCACAGAGACGTCTTCATTGGAGAATGACTCCTCTCTGGGAGACACAGATGGACTGAATACAGACCCCTCCCCAAGAGACACTGAATCCAACGTTGAGCATATGAGAGCTGCTCTGCCAGGGAGCAACGAGAGAGACGGCCATGAAAGCCAGAAAAACAGCAATACTACTAAAGGGACACGATCCAAAGAAACCAAACGCTTCAAGTGTGATATTTGTGAGAAGACCTTCAGCAAGAAAGAGTTGTTGAGAGTTCACAAGTTAACACATACAAGACCCTTCAAGTGTGATGTGTGTCAGAAGACCTTCACCAGGAAGGGGTTACTGGAAGCTCACAAGCTAAGTCACACAAGACCCTTCAAGTGTGATGTTTGTGACAAGGTCTTCAACCTGAACCGCTTGCTGGTACGTCACAAGctaattcacacaggagagaggccaTTCGCTTGTGGTCAGTGTGGCAAAACATTCAGAATGTCCAAGCAGCTTGAACATCACATGTTGCGTCACAGAGAAAAAACGTTCAGTTGCAAAGTTTGCGACAGTATATTCCCTGCCAAGAAAGATCTGACACAACATCGGCTTGTTCATGCTTTGGAGAGACCGTTCAAGTGCCTGACTTGTGGAAAGGGTTTCACATCAAGGGCCGCGCTTATGGGGCACGAGAGAATCCACACCGGTGAAAAACCACACAGCTGTGCTGAATGTGGGAAGAGTTACAGACTGTCTTATGACCTAAGTATTCATATGCGAAGACATACAGGTGAACGTCCGCACTTATGCTCAGAGTGTGGTAAGAGCTTTATAACTAAATCCAGCCTTGAAAACCACAAGGTAAtccatacaggggagaagccatttAAATGTGAGACCTGTGGAGCTGCTTTTGGCCATAAAGCAAACCTTCAGAGACACCAAGTTCTTCACACAGGGGAGAGACCGTACAAATGTAAAGTGTGTGGGAAAAGCTACCTTCAGTCCACTGACCTAAAAGCTCACATGCACCGTCATGGAGCAACCAAACCATTTATGTGTGACCTATGTGGAAAGACTTTCATTTACAATTACCAAATGAGACAGCACAATATAAAATGGCACACAGCTGAAGGAGAGAACCTTCCTGGGGGAGTTGGAACCTCAACAAAGCCATTCAGTTGTGATGTATGTTTGAACGGCTTCAGCTCCATGCTAACTCTGAAAAAGCATCaagaaattcacacaggacaaaaTCAATACTCTTGTTCTGTTTGCGGGAAAACCTTTGCCTATAAAAATACTTTGGACTATCACATGAAACTTCACAGTGGAGAGAAGCCCCATGAATGTAAATACTGTGGAAGAAAATTCATTCTTAAGCAAGCTCTCAAAGGACATGAGCGAACCCATACAGGTGAAAAGCCCTTCAAATGCGGTTATTGTGACAAGACTTTCTCAGTCAACAGCAATCTCAAAAGGCATGAGCGAgtccacacgggagagaagccatTCAAATGTGACGTCTGCGGGAGAGGTTTCAGCCAAGCCAACAACGTCAAAGCCCACATGCAAGTCCACACTGGAGTTAGGCCTTATTATTGCAAGAGATGTGGAAAGGGCTTTTCTGACATAAGACACTACAAAAACCATAGCTGTAATGGTGTGGCAGTGACACGCAATCAGTCTCGTAAACCTTCTGACCGCACTTTCAGAAGTAGGAAAGGAGGTAGAGACAGGAGTGCTTGCCATAatgctgctgtgatgtcgactcaGTGATATATTCTTGATCATTCACAGTGGGGCAACTTCCTGCTTTCAGACATCAGGAACAACATGGATGTATTCAGCAGGGTGAGAAGTTCTCGGGTGAGTTTCTGGAAAGCCTCGTAGGAAATGAGAGGCATATCTGCCGTAATGCTTGGAGATTTTGCTATAAATCTTAGTCAATGTTCATGAGCCCACATTATCATGGAGACGTTGTATATTTCTGACTGTGTTCAATCATttacaatgtgtttttttttctgttgTGTAAATCCTTAAACACCTAATTTATGTGAAAATATCAGAACTACACATTAATACTTTGTCCATCAGCTACATAGGATCGCTCAATTAGTTGTTCAGGTGATTGTCCTGATTGGGCAAGAATTTTGAAGGAATTCTTGTTTTTAAAGGTCCAATGTTGTTTCTATGTCAATATCATATAATTTCTTGGTAACAATTGAAGTACCTCATTTTgcttgttttcaattaaaatggtcaaaaatatattttaaaatcac

Function

NR:

description
zinc finger protein 708-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976797.1 False 3358 mRNA 0.43 4 12353415 12358721
XM_036976798.1 True 2959 mRNA 0.44 4 12353415 12360161

Neighbor

gene id symbol gene type direction distance location
LOC110523208 LOC106571116 coding downstream 3612 12341006 ~ 12349803 (-)
LOC110523210 LOC106571086 coding downstream 12768 12324608 ~ 12340647 (-)
LOC110523209 LOC106571116 coding downstream 39933 12302828 ~ 12313482 (-)
LOC110523214 NA coding downstream 55600 12294889 ~ 12297815 (-)
LOC110523211 LOC106571125 coding downstream 64089 12284155 ~ 12289326 (-)
LOC110523215 znf79 coding upstream 2511 12362672 ~ 12365603 (-)
nek6 LOC106570951 coding upstream 287769 12647930 ~ 12734470 (-)
LOC110523222 LOC106570907 coding upstream 422055 12782216 ~ 12795082 (-)
crb2a LOC106570879 coding upstream 624844 12985005 ~ 13026155 (-)
cdk9 cdk9 coding upstream 687757 13047918 ~ 13051933 (-)
G368704 NA non-coding downstream 92180 12258015 ~ 12261235 (-)
G368714 NA non-coding downstream 99982 12252379 ~ 12253433 (-)
G368715 NA non-coding downstream 105434 12247147 ~ 12247981 (-)
G368710 NA non-coding downstream 109205 12241305 ~ 12244210 (-)
G368854 psmb7 non-coding upstream 285820 12645981 ~ 12647401 (-)
G368910 NA non-coding upstream 317531 12677692 ~ 12684042 (-)
G368976 NA non-coding upstream 448606 12808767 ~ 12809226 (-)
G369075 NA non-coding upstream 557554 12917715 ~ 12918632 (-)
G369121 NA non-coding upstream 640666 13000827 ~ 13001212 (-)
G368612 ctxn3 other downstream 216625 12134052 ~ 12136790 (-)
G365752 NA other downstream 3163317 9189669 ~ 9190098 (-)
G364754 NA other downstream 3302707 9047542 ~ 9099000 (-)
G364322 NA other downstream 4049232 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5627435 6562531 ~ 6726634 (-)
G368921 NA other upstream 345405 12705566 ~ 12706092 (-)
G370333 NA other upstream 1847029 14207190 ~ 14208705 (-)
G370635 NA other upstream 2067177 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 2632967 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2763314 15123475 ~ 15124789 (-)

Expression


Co-expression Network