LOC110523215 (znf79)


Basic Information

Item Value
gene id LOC110523215
gene name znf79
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12362672 ~ 12365603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601714.2
TGGAAGTACTTAGTCATTCTGGCCTACTTCACACCAGTTtttgtaactagctagctatagcaACTCTTGAGCAGCACAGAAATCAATAACTTCTCCCACTATTTTTTCCCCCAAAATGTCTAAACTACAGCTACTTAATGAGGTTCTCGATGAAAAATTAGCTGCAGTTCCCATGGAGATATCCGTAGTAGTTAAAACAACGATAGCAGAGTACCAGGGAGAAATCTCCCGTTTGAAGCGGGCGGTTGCACGTCTACGAAGACTGCTGGATTTGGTTTTCAAACCAGAGATAAAATTGCAAAGATTAGCAGACCTCCAGCAGCTCACTCTCACCGAAAAGGTTATTCCTGAGCAGAGTCACTGTGAGCAGGAATGGAGCCCTGGTCTGGGGCCGGTGGAGTCGGATACCGAAGAATCAATGTGGGACTCTTTCAACATCATAACTGTGGAGAACCAAACAGAATCTGATGGCGAGAGCCACAACAGAGAATCTGAATCAACCAGTGACTATGAGCCCCCCTCTGAAGTAAGTCCAGACAGTGACAACAGTGAAAATGGAAACGTGGATGGAGTGGAGAGTAGAATACCACTGTCAGGATTAAAGCCTCTCAAatcaaagagaggaagaggacggCCAAGGAAAGGAACCAGTGAGTTGCCTGATCTGAAATGTGACGTGTGCGGGAAATGCTTTACAGCAGCACGTAGTCTGAAAAGGCATCAGCTAAATCTGCACACTGAAGGGAGACTAACAGGACAGCCAAAGAAAAAAAACTGTGAGTTTCCTGATCTGAAATGTGATGTGTGTGGAAAATGCTTTGAGAAAGCACGTAATCTGCAACGGCATCGGCAATATCGGCACAGTGAGGAGAGACGACACATGTGCGACACTTGTGGGAAATGTTTCATCCGGAAGGACCATATGACCCAGCACATGAAGCTTCACACAGAGGAGAAAAAACACTGCTGCACTGAATGTGGCAAATGTTTCCTTCACAAGTCCATCCTGAAAAATCATATGGGTACTCATACAGGGGAGGCTTTTAAATGTGATGTGTGTGGAAAATGCATGACGACTGCAGGTGGTCTGAAAGTGCATCAGAAAAATCACACTGAGAAATCGCATCAGTGCAAAGAATGTGACAAAGCCTACACCTTTAAGGGAGACCTGATAAAGCATGTGAGGATTCACACTGGGGAGAAACCATTTCAatgcaaagaatgtggcaaatGCTTCAGTGACAAGGGAAGCCTTCCAAAGCATATGATGACTCACACAGAGGAGAAACCACATCGCTGTAACGAATGTGGCAAATGCTTCAGTCTGAAGGGAAGCCTGACGGCGCATATGAAGATTCATACAGGGGAGGGAGTTCAATGTCATTTGTGTGGAACTCACTTGAAGTTAAAATCAAGTCTAAAAAGACATCTGCGAACTCATAGAAGGAATAGCCCTAATGAATGAGAACACGTACAAATGTTTTGGAAAGATCCAAGCTGAATATTAATTATAATTGTTATTTCTGTGGAATGGAGAAGGAGACCATTTTTCATAAATATTTTACCTGTATTTATAGTGTAATGTTTTGGATTGACAAACAGAACATGTACAATTGAATGGCTTTGATAATTACTTATTTCAGAAATGAGTGATAAGAATTTAGTATATTTAATTCAACTGCTAATAATTATAGGTCAAATTCATATTTTCTAAATAATTGGTCTGATTTAACTAATATGGCACTAttttaaatacaattaaaaacaaaGGCACTATTATTAATCAATATGATTTGTTTGGGGAGGACTCCTGGCAATGTAAAAAGTTTGTTTTTGTATGTGACTATTCCTCTTTCgctaaaattatatatatatatatatatatatatatataaataaaaaaagaggCAAGGCCCCCACTTGTGTCATGTCACATCATACCTGAACCACCTATTGAGATTAGCTTTTTTAAAGTAAATCGGGTTAAATGAGGTGAAAGGGAGACTGGAGGACTTTAAGCAGATTTCCCAAtattaatggacaaaacatttgcaCAACCACCTTGGGTGTAGAATGGACCCCACTTTTACTGCGACACAATTACCAGAAATGTGTGTatagtcccccccaaaaaatcacaatagcttaaaaataaatacattcaatTATTTAGATGATAACTAGTATTAAATATATCAACAATAGTGCATATTTTCCCCCTGACTATTTGTTTACAAGGTAAACAGGACAGGACTCTTATTCTGGAGGATTCCAAAATGGTCTCTTGGGAAGTCCCTTTCTGTTAGGGAACACCTACTCTGG

Function

symbol description
znf79 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601714.2 True 2322 mRNA 0.40 2 12362672 12365603

Neighbor

gene id symbol gene type direction distance location
LOC118964561 LOC106571021 coding downstream 2511 12353415 ~ 12360161 (-)
LOC110523208 LOC106571116 coding downstream 12869 12341006 ~ 12349803 (-)
LOC110523210 LOC106571086 coding downstream 22025 12324608 ~ 12340647 (-)
LOC110523209 LOC106571116 coding downstream 49190 12302828 ~ 12313482 (-)
LOC110523214 NA coding downstream 64857 12294889 ~ 12297815 (-)
nek6 LOC106570951 coding upstream 282327 12647930 ~ 12734470 (-)
LOC110523222 LOC106570907 coding upstream 416613 12782216 ~ 12795082 (-)
crb2a LOC106570879 coding upstream 619402 12985005 ~ 13026155 (-)
cdk9 cdk9 coding upstream 682315 13047918 ~ 13051933 (-)
crata LOC106570862 coding upstream 693284 13058887 ~ 13087209 (-)
G368704 NA non-coding downstream 101437 12258015 ~ 12261235 (-)
G368714 NA non-coding downstream 109239 12252379 ~ 12253433 (-)
G368715 NA non-coding downstream 114691 12247147 ~ 12247981 (-)
G368710 NA non-coding downstream 118462 12241305 ~ 12244210 (-)
G368854 psmb7 non-coding upstream 280378 12645981 ~ 12647401 (-)
G368910 NA non-coding upstream 312089 12677692 ~ 12684042 (-)
G368976 NA non-coding upstream 443164 12808767 ~ 12809226 (-)
G369075 NA non-coding upstream 552112 12917715 ~ 12918632 (-)
G369121 NA non-coding upstream 635224 13000827 ~ 13001212 (-)
G368612 ctxn3 other downstream 225882 12134052 ~ 12136790 (-)
G365752 NA other downstream 3172574 9189669 ~ 9190098 (-)
G364754 NA other downstream 3311964 9047542 ~ 9099000 (-)
G364322 NA other downstream 4058489 8303267 ~ 8304183 (-)
LOC110524941 LOC106572051 other downstream 5636692 6562531 ~ 6726634 (-)
G368921 NA other upstream 339963 12705566 ~ 12706092 (-)
G370333 NA other upstream 1841587 14207190 ~ 14208705 (-)
G370635 NA other upstream 2061735 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 2627525 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2757872 15123475 ~ 15124789 (-)

Expression


Co-expression Network