nr5a1b (LOC106570956)


Basic Information

Item Value
gene id nr5a1b
gene name LOC106570956
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12574579 ~ 12592217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976809.1
TATGTCTGTCCGTGGGCATGCACATGGTAGGTCTCGATCAGGCAAAGTCAGTTATTGTAGGGAGCTGCTCACTGCTCCTTCCTCCATCATCATTCCTGCGGGGTGGGCCTATTCATTTCATAAAGTTAGAGCCACAGCGCGTGTTTCGAAGTCGTTTCTCCGTGGATGCATATCCAAACTGACACTGAATAGCCTATTACCGTTCTAGCCAAGAGGAGAACGGACACCGAATACTACCGTTCTAGCCAATATAACGCTGGGGATCCAACAGGTGTTCCGTTGACCGGAATGGAGTACACTTATGATGTCGATTTGGAAGAGCTATGTCCTGTTTGTGGCGATAAGGTGTCGGGATACCACTATGGACTACTGACGTGTGAAAGCTGTAAGggtTTCTTCAAAAGAACGGTTCAAAATAATAAGAGGTATACATGTGCAGAAAACCAGGATTGTAAAATTGACAAAACTCAGAGGAAACGGTGTCCATTTTGTCGGTTTCAGAAATGCCTGAATGTTGGAATGCGATTAGAAGCTGTCCGAGCCGATCGCATGCGAGGAGGCCGGAATAAGTTTGGCCCCATGTACAAGCGCGACCGAGCCCTCAAGCAGCAGAAGAAAGCATTGATTCGAGCCACTGGCCTCAAGATGGAGACCACCCCTCCGATGCTGTCCCCTGACACTCAGACAGACTACACCTTCACCGGCAGTCTCCCGGGCCTCCACCCGCTCCCCAAGGGCATCCTCCACACCACCACGACCCCCATCGCCCCCACAGACTACGACCGCAGCCTCTACGGACCCCCCTCACTGGGCATGGCTATGCCTGGACTCCCCCCCCATGCACCCTTACCCCCCCAGTACCAGTACGCCTCCTTCCCCAGCAGGGCGATCAAGTCAGAGTACCCGGACCACTACACAAGCTCCCCAGACTCGGTAGTGGGCAGCTACACCTACCCGGAGCAGGTATACTCTGGACCGGGCTCTCCGCAGGTCCCCGGGGTGCCTCAGCTGGTGCTGGAGTTTCTGCGATGTGACCCGGACGAGCTGCAGGTGCAGAGTAAGATCGCTGCTCACCTTCAGCAGGAGCAGAGTGGCCAGGGGGGCAAGGGTCAGGAGAGACTCAGCCCCTTCAGCCTAATGTGTCACATGGCTGACCAGACGCTCTTCTCCATCGTGGAGTGGGCCCGAAGCTGCATCTTCTTCAAGGAGCTCAAGGTAGGAGATCAGATGAAGCTGCTTCACAACTGCTGGAGCGAGCTGCTGGTGTTGGACTTCATCTCCAGGCAAGTCCAACACGGCAAGGAGGGCAGCGTGCTACTGGTCACAGGGCAGGAGGTGGAGCTGGCGTCCATAGCGTCCCAGGCAGGAGCCACTCTCACAAGCCTGGTGCAGAGAGGACAGGAGCTAGTTGAGAAACTACAGACCCTACAGGCGGACCGCAGAGAAATTGCCTGCTTCAAGTTCCTCATCCTCTTCAACCCCGATGTGAAGCTACTGGAGAGCCAGGCATTCGTGGAGGGCGTCCAGGAGCAGGTGAACGGGGCTCTGCTGGAGTACACCATGTGTGCTTACCCCCAGCACCTGGACAAGTTCAGCCGGCTGCTGATGCGCCTGCCTGAGCTCAAGGCCTTGTCGGCACAGGCCGAGGACTACCTCTGCTACAAGCACCTGAGCGGAGAGGTGCCCTGCAACAACCTGCTCATCGAGATGCTGCACGCCAAGAGGGCGTGCGCTTGAGGAGGGcacacgtttgtgtgtgtgtgttagtgtttttgacaagagggaagagagataagagggaagaGAGATTTTAGAGAGATAAAGTGTGAGAAAGGCAGagggaagcaagagagagagagagagagagatcacccttCTTGCCCCCAAAGTGCCAAATACTGAGGTCCCGGTCTCAGCCATTCCAGACCTCAGATCTAACTACAGTATGCCCGAAACCTGGACTGGATTAATTCAATTCACCACCAAGAGTGATTCAGTGGTAGAGAAATGCACTGAGTTGATTCACTCACCCTTCAGAGATTGAAATGGGATTTACATTTGAAGATGATGATTCACTGTGCAGGAGGTAGTCATTCTAAGAGTCATTCAAGGAAAACGATTGTCAGAGACCTGATTCATCTGCAGTTCATATTCAGGCAATGATGCACTAGAGTTGTTGAACAGAGATGCACTGTATTGATGTACAGTGCATACAGAGAACTGATTCATTCTGAATAATTCCATATCAAGTTCCAAAAAACGATCTTATGCTAAAGACATGCTAATTAGTTACTTGTTAATTCATTTGTAATTAAAATGCATACTGGTTTACTCATTATGTAATATCACAGTTAATTAACTAATGACAATCACTAAACAACTAAAGACATACATTTCAGCTGGGTATAACCTACCTGAAGGGATCCTAAAAGAGGAATACCACATCTAAAGTTAGCTGTATGCTAATGTTGCATAGATGCTAATGCTACTAGCTAGGTTGACACAACCACAATGACAGCATTTTGTTtaaagagagaagaaaaaacGCTCCCGATGCGTGTCTACGACGAGCAGTCTCTCTGAACCTTACTACTGTGCTCACATAGCCTTACAAATTCAGACCCCTGTTATATAGACTAATATTTATATTCTAAGCTGACAATTCTCCGTTTCCAATGCTTTTTCTTCTACTTTACTTCGGATGAGTCTGTATTTTAAACATTTCGTAAGTCAAATTTTCTCGTGTGGTTGCTTTTGAATTCTGATCTTTGTGtttcctaaaaaaaaaatatgaaaaatgtaaAAGCCACAGGGAGATATTGTAATAGAAATATAGCTGTCACAGACTTGGTGTGTATCAGTGCACTAGTGAATAGGGTAGAGAGCTgaggacagggaaagagagagagagagagagatgggaggagggcagagagaaAGCAATTTAATTCTCAATAGAAGTGACTTGCACTGTAGTTTCCCATTTGCCAGCAAGGTCCCTGCTACCCCCGGTTATAAAGTCAGATCAACAGAAAGGTCAAAGGGCACATGTAGATGTGCATGGACACATGAGTACACATGTAaatagtgtggttgtgtggtaCACGACAGGGAGTTGCTGTAAGGCGCGTAATGAAAGAGATATGCAGCGTAGTACACCTACGCCCTCGCCACTTCCTGgctgcacacaaacaaacacacacacacacactgaggacaaTGACACACACTCATCCAGGTGACGAAAAGCTATGAAGAGAGAATCGTTCTGAATAGACAGCTACTACACGAAATGTACAAATACGATGTTGACTACTGTAAATTGAAAGTGGAACTGAATACTGAATGTAGTTGGAGACATTCTGAACATTTTTatcactttctctcgctctctctctttctctcgctctctttctttctctctctttctctctgtagatACATGCTCAATGTAAGTGATAAATTAACTGGAGAAATGTATatactatacagtatgtaatgaaTGTACATGACATGAAATCGTACCCATTAATGAATGGTTAACGTTTTGGATGCAGCCCTGAAACTCATAACATACATTTGATATCAATGGTATAAGTTATGGCATGTGTGTGCtcgcatgtgcatgtgtgtgtgtttacacaccTGTACCGTTGAGTGGGTAAAAGTTCTTAGAATATAGTACCTTAATGACTTGGCAAGGACCTCTACTAAAATGGACTTAATCTTTGCCTGATAGAAAATAACCATTTACAGTTTATCCATACCAGAAGACAATCACCTCAACTACATATTGAATgtgtattttcacagtaaaagtTGCCTCTGCAATGCTTTTACTGTTTTGGGAATTGAAATTCAGTCTTTCACTAACTTGCACTCCCACTCCCCAATAAATGCTTTCTGTTTGGGCCTTGCCCCTGGACGCTGGACCCTGGCCCCTGGACGCTGGCCCCTGGCccctggcccaacactctataTTCCCTTGCTGAACTTTCCTCTATTATGTTaaagttgctacatccattttcgGACATAAACATTCATGATAtgacccattgattcttgaagaatgtaacttataaatgcctcttCAGCTTAGTTccactgtcataccccatcaaaACCCCCAAAATAAGTTTGCTTTATGCcaacaaatgtaaacaaacactgcgtagcctcaaaacatggttaacacTTTTATTTTCATATCATGGATGGctagtccttgcatccatagctttgtctatgaatttgagagtggtaacAATTTCTCCAACCCCTCCCTCAGCTTTTTGCCAAAACAGTGGCATGGagtgctttgttattgtttcaactgctgattgctccTTTAAGTGGAGCAGACATTTACTGCCTTGCACTGTGTGATCTGGACATATGTAATCATGTGACCTCATTTGTCTGATACTTGTTTATATAGCTTGATTCAATCACATGATGTGTTTATTTTGGTTAATCCTTCTGACTGTGCTTAATTGTAATTGTTTCAAATCAATAAAAGCTAATTATTTAAAACT

Function

NR:

description
PREDICTED: steroidogenic factor 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08705 NR5A3, ftz-f1; nuclear receptor subfamily 5 group A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976809.1 True 4538 mRNA 0.46 7 12574579 12592217

Neighbor

gene id symbol gene type direction distance location
LOC110523216 LOC106570966 coding upstream 13993 12370910 ~ 12560586 (+)
LOC110523213 LOC106571108 coding upstream 253003 12317108 ~ 12321576 (+)
slc12a2 nkcc1a coding upstream 313337 12180768 ~ 12261242 (+)
LOC110523206 ctxn3 coding upstream 440011 12113703 ~ 12134568 (+)
prrc1 prrc1 coding upstream 481187 12056952 ~ 12093392 (+)
psmb7 psmb7 coding downstream 34855 12627072 ~ 12647406 (+)
LOC110523223 LOC106570883 coding downstream 210615 12802832 ~ 12978339 (+)
ptpa ptpa coding downstream 497510 13089727 ~ 13107713 (+)
ntmt1 ntmt1 coding downstream 947753 13539970 ~ 13543920 (+)
fkbp15a fkbp15 coding downstream 965537 13557754 ~ 13582939 (+)
G368126 NA non-coding upstream 55415 12515015 ~ 12519164 (+)
G368124 NA non-coding upstream 62071 12511759 ~ 12512508 (+)
G368039 NA non-coding upstream 205528 12368778 ~ 12369051 (+)
G367987 LOC106571116 non-coding upstream 231137 12284239 ~ 12343442 (+)
G367937 NA non-coding upstream 308527 12265372 ~ 12266052 (+)
G368216 NA non-coding downstream 88024 12680241 ~ 12683744 (+)
G368281 NA non-coding downstream 190023 12782240 ~ 12784546 (+)
G368355 NA non-coding downstream 311953 12904170 ~ 12904418 (+)
G368356 NA non-coding downstream 312690 12904907 ~ 12905339 (+)
G368387 NA non-coding downstream 372833 12965050 ~ 12970896 (+)
G367684 NA other upstream 694544 11878329 ~ 11880035 (+)
G366973 NA other upstream 1145869 11425642 ~ 11428710 (+)
G366748 NA other upstream 1597427 10976682 ~ 10977152 (+)
G365197 NA other upstream 2725425 9848703 ~ 9849154 (+)
G364850 NA other upstream 3345348 9228838 ~ 9229231 (+)
G368440 NA other downstream 516479 13108696 ~ 13109134 (+)
G369763 NA other downstream 1173030 13765247 ~ 13769296 (+)
G370360 NA other downstream 1663586 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 1728887 14321104 ~ 14325895 (+)
G370414 NA other downstream 1775455 14367672 ~ 14368161 (+)

Expression


Co-expression Network