psmb7 (psmb7)


Basic Information

Item Value
gene id psmb7
gene name psmb7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12627072 ~ 12647406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601719.2
TCAGTTATTCCGGAGGACAATCAGTGTAACCCTGGGAGAAGTTACCGCTTTTAGTGAACCTCGCTTCCCGGAAGCTGGAATTCAGTACAGGAAAATGGCGACTCTGTCAGTGTGCCAGCCGCAGCTTGGAGGTTTCAGTTTCGAAAATTGCAAGAGGAATGCAGTCTTGGAAGCTGAAGTTACCAAATTAGGATGCAACATACCATCTGCCCGGAAAACAGGCACCACAATCTGTGGGGTTGTTTTTAAGGATGGGATAGTTCTTGGTGCTGACACCAGGGCCACAGAGGGCATGATTGTGGCAGATAAGAATTGCTCCAAGATCCACTACATCTCCCCAAACATCTATTGCTGTGGAGCGGGTACGGCAGCAGACACTGAGATGACCACCCAGATCATCTCCTCTAACCTGGAGCTGCACTCCCTCTCTACAAGCCGGCTGCCCCGCGTGGCCACTGCCAACCGCATGCTCAAGCAGATGCTCTTTAGATACCAGGGTCACATTGGCGCTGCCCTGGTGCTGGGTGGAGTGGACTGCAACGGGCCCCATCTCTACAGCATCTACCCCCACGGCTCCACTGACAAGCTTCCTTATGTCACTATGGGTTCTGGCTCTCTGGCTGCCATGGCTGTGTTTGAGGACCGCTATAAGCAAGACATGGAGGAGGAAGATGCCAAGCGGCTGGTTCGGGACGCCATTGCGGCTGGCATCTTCAACGACCTTGGCTCCGGCAGCAACATTGACCTGTGTGTCATCACCAAGGGCAGGGTGGACTACCTGAGGCCTCACGACATGGCCAACAAGAAGGGTGTCCGAACCGGTAATTACAAGTACAAGCAAGGAACAACCGGAGTCCTGACGAAGTCCGTGATCAAATTGGATCTGGAGGTGGTTGAGGAGACGGTTCAGACTATGGATACCTCTTGAAGCCTCACCGGAACATTCTGATGTTTTCCCCGTTGTTACTTCCCAAATTCGCCTTTACTTCCTTCAGTGGAGATGGCATGTTTTTCCATGGTTTAAAATAAAGTTTGCGTTGAGTCTT
>XM_021601718.2
TCAGTTATTCCGGAGGACAATCAGTGTAACCCTGGGAGAAGTTACCGCTTTTAGTGAACCTCGCTTCCCGGAAGCTGGAATTCAGTACAGGAAAATGGCGACTCTGTCAGTGTGCCAGCCGCAGCTTGGAGGTTTCAGTTTCGAAAATTGCAAGAGGAATGCAGTCTTGGAAGCTGAAGTTACCAAATTAGGATGCAACATACCATCTGCCCGGAAAACAGGCACCACAATCTGTGGGGTTGTTTTTAAGGATGGGATAGTTCTTGGTGCTGACACCAGGGCCACAGAGGGCATGATTGTGGCAGATAAGAATTGCTCCAAGATCCACTACATCTCCCCAAACATCTATTGCTGTGGAGCGGGTACGGCAGCAGACACTGAGATGACCACCCAGATCATCTCCTCTAACCTGGAGCTGCACTCCCTCTCTACAAGCCGGCTGCCCCGCGTGGCCACTGCCAACCGCATGCTCAAGCAGATGCTCTTTAGATACCAGGGTCACATTGGCGCTGCCCTGGTGCTGGGTGGAGTGGACTGCAACGGGCCCCATCTCTACAGCATCTACCCCCACGGCTCCACTGACAAGCTTCCTTATGTCACTATGGGTTCTGGCTCTCTGGCTGCCATGGCTGTGTTTGAGGACCGCTATAAGCAAGACATGGAGGAGGAAGATGCCAAGCGGCTGGTTCGGGACGCCATTGCGGCTGGCATCTTCAACGACCTTGGCTCCGGCAGCAACATTGACCTGTGTGTCATCACCAAGGGCAGGGTGGACTACCTGAGGCCTCACGACATGGCCAACAAGAAGGGTGTCCGATGTGTGTATGAGCATGAAGCCTTGCCCCACCAAACCGGTAATTACAAGTACAAGCAAGGAACAACCGGAGTCCTGACGAAGTCCGTGATCAAATTGGATCTGGAGGTGGTTGAGGAGACGGTTCAGACTATGGATACCTCTTGAAGCCTCACCGGAACATTCTGATGTTTTCCCCGTTGTTACTTCCCAAATTCGCCTTTACTTCCTTCAGTGGAGATGGCATGTTTTTCCATGGTTTAAAATAAAGTTTGCGTTGAGTCTTCAA

Function

symbol description
psmb7 Predicted to enable kinase activity and threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within phosphorylation and proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMB7 (proteasome 20S subunit beta 7).

NR:

description
proteasome subunit beta type-7 isoform X1

GO: NA

KEGG:

id description
K02739 PSMB7; 20S proteasome subunit beta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601719.2 False 1046 mRNA 0.52 8 12627072 12647403
XM_021601718.2 True 1082 mRNA 0.52 9 12627072 12647406

Neighbor

gene id symbol gene type direction distance location
nr5a1b LOC106570956 coding upstream 34855 12574579 ~ 12592217 (+)
LOC110523216 LOC106570966 coding upstream 66486 12370910 ~ 12560586 (+)
LOC110523213 LOC106571108 coding upstream 305496 12317108 ~ 12321576 (+)
slc12a2 nkcc1a coding upstream 365830 12180768 ~ 12261242 (+)
LOC110523206 ctxn3 coding upstream 492504 12113703 ~ 12134568 (+)
LOC110523223 LOC106570883 coding downstream 155426 12802832 ~ 12978339 (+)
ptpa ptpa coding downstream 442321 13089727 ~ 13107713 (+)
ntmt1 ntmt1 coding downstream 892564 13539970 ~ 13543920 (+)
fkbp15a fkbp15 coding downstream 910348 13557754 ~ 13582939 (+)
rpl12 rpl12 coding downstream 955803 13603209 ~ 13606051 (+)
G368126 NA non-coding upstream 107908 12515015 ~ 12519164 (+)
G368124 NA non-coding upstream 114564 12511759 ~ 12512508 (+)
G368039 NA non-coding upstream 258021 12368778 ~ 12369051 (+)
G367987 LOC106571116 non-coding upstream 283630 12284239 ~ 12343442 (+)
G367937 NA non-coding upstream 361020 12265372 ~ 12266052 (+)
G368216 NA non-coding downstream 32835 12680241 ~ 12683744 (+)
G368281 NA non-coding downstream 134834 12782240 ~ 12784546 (+)
G368355 NA non-coding downstream 256764 12904170 ~ 12904418 (+)
G368356 NA non-coding downstream 257501 12904907 ~ 12905339 (+)
G368387 NA non-coding downstream 317644 12965050 ~ 12970896 (+)
G367684 NA other upstream 747037 11878329 ~ 11880035 (+)
G366973 NA other upstream 1198362 11425642 ~ 11428710 (+)
G366748 NA other upstream 1649920 10976682 ~ 10977152 (+)
G365197 NA other upstream 2777918 9848703 ~ 9849154 (+)
G364850 NA other upstream 3397841 9228838 ~ 9229231 (+)
G368440 NA other downstream 461290 13108696 ~ 13109134 (+)
G369763 NA other downstream 1117841 13765247 ~ 13769296 (+)
G370360 NA other downstream 1608397 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 1673698 14321104 ~ 14325895 (+)
G370414 NA other downstream 1720266 14367672 ~ 14368161 (+)

Expression


Co-expression Network