cdk9 (cdk9)


Basic Information

Item Value
gene id cdk9
gene name cdk9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13047918 ~ 13051933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601729.2
GTGAAAGCAgaaagactacattacccatctcgCTTCCTCTTTGGTAAAGTGTGTGAAAGCACAACGACTACATTACCCATTTCGCACTGGGCACGCACGGATCCGACGGAACAAATAAGGATGCAGCGAGACAAAACAGGAAACGCCGCCGGGGCTGAAAAGCCTGACCGGGAGGCCGCCATTATGTCCAAGTACTACGACGGAGTCGAATTCCCTTTCTGTGATGAGTTTTCTAAATATGAAAAGCTTGCCAAGATCGGCCAAGGGACCTTTGGGGAGGTGTTCAAAGccaaacacagacagactgggAAGAAGGTAGCGCTGAAGAAAGTGTTGATGGAGAATGAGAAAGAAGGGTTTCCAATCACTGCTTTGAGAGAGATCAAGATTCTGCAGCTCTTGAAACATGAGAACGTTGTCAACCTCATAGAGATCTGTCGAACCAAAGCCACCCAGTTCAACCGCTACAAAGGAAGCATCTACCTGGTGTTTGACTTCTGTGAGCACGACCTGGCAGGGTTGCTAAGCAACGCCAATGTGAAATTCACCCTGGCCGAGATCAAGAAGGTGATGCAGATGCTGCTGAACGGACTCTACTATATCCACAGAAACAAGATCTTACACAGAGACATGAAGGCGGCCAACGTGCTCATCACCCGTGACGGCGTGCTGAAGCTGGCAGACTTTGGGCTGGCGCGAGCCTTCAGCCTGGCCAAAAACAGCCAGGGCAACCGCTACACCAACCGCGTAGTCACACTCTGGTACAGGCCCCCAGAGCTGCTGCTAGGCGAGAGAGACTACGGGCCTCCCATTGACCTGTGGGGTGCAGGCTGCATCATGGCGGAGATGTGGACACGCAGTCCCATCATGCAAGGCAACACAGAGCAGCACCAGCTCACACTCATCAGTCAACTGTGTGGCTCTATCACGGCAGAGGTATGGCCGGGCGTGGACAAGAAGTATGAGCTTTACCAGAAGATGGAGCTCCCTAAGGGCCAGAAGAGGAAAGTGAAGGACCGCCTCAAGGCTTATGTCAAGGACCCGTACGCCCTGGACCTGATTGACAAGCTCCTAGTCTTAGACCCGGCGCAGAGGACGGACAGCGACGACGCTCTGAACCACGACTTCTTCTGGTCGGACCCCATGCCCTCGGACCTGAAGAACATGCTCTCCACGCACAACACGTCCATGTTTGAGTACCTGGCCCCGCCCCGCCGGAGAGGTCACATGCCCCAGcagccagccaatcagaacaGGAACCCGGCCACAACGAGTCAGACGGAGTTTGACCGGGTGTTTTGATTGGACTAAGGAGTTGGAGGAGGGCGAGTGGCAGACTGTTGCAAGGCAGAAAGTGGCCAGCCCCAGTTGGCGTAAGACTGATTTTAGGGAACTGTAGCGTTCTTTCCAAGTGGAGGCAACATGAGGAAAATGTGGACGTTTCTTCAAGCAGTATTGTTCTCCTGTTCATGTTCTATCACATTAGTCTGTCCTCTGCCTCGGACATTTGATAAAGCGTTGAGATAGTACTGTGTTGTTATTGGGTGGGATTTCAATTCAATAACTCATTTGCTTCTTCTTACGCTTACTTGACCTTGTCTTGGAAGATGTGAAAGGTTTTATAGGGTGTAAAGGATTTGTGAGGAACTAGGCCTACGCTTCAGCTACGTGACGGCTAGATGGAGCTGTTGCTCTTTCACAAAACCTGCCCGGTCCTTTCAGAGTCAACAAAGACAGGAAGCAAATTATTGGATTGGTATCCAGCACTCCATGGGCATAGACGTGCGTTCAGTGGGTTGCTCCGAGGATAATTCCTCTAGTGTTGGAACACGTccaagaaccacacacacacacacaaagaaccacacacacaaaggattGACACAAGCCATCAAGACAGCGATTCTTATCGCTAGAACCAGTAgtttcctcttttttttttttttcactgttttgttcattttaaaacatttcttTTTTATATTGTACAATCATGAGTTTTGCCAGGTATCTTTGTGGTGTATGCGATACGTTGTCAGTATAGTTACACTAATAAACCTCACTGATACACTGCCA

Function

symbol description
cdk9 Predicted to enable ATP binding activity and RNA polymerase II CTD heptapeptide repeat kinase activity. Acts upstream of or within several processes, including cardiac muscle tissue regeneration; inflammatory response to wounding; and regulation of cardiac muscle cell proliferation. Predicted to be located in PML body and cytoplasm. Orthologous to human CDK9 (cyclin dependent kinase 9).

NR:

description
PREDICTED: cyclin-dependent kinase 9 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K02211 CDK9; cyclin-dependent kinase 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601729.2 True 2076 mRNA 0.50 8 13047918 13051933

Neighbor

gene id symbol gene type direction distance location
crb2a LOC106570879 coding downstream 21763 12985005 ~ 13026155 (-)
LOC110523222 LOC106570907 coding downstream 252836 12782216 ~ 12795082 (-)
nek6 LOC106570951 coding downstream 313448 12647930 ~ 12734470 (-)
LOC110523215 znf79 coding downstream 682315 12362672 ~ 12365603 (-)
LOC118964561 LOC106571021 coding downstream 687757 12353415 ~ 12360161 (-)
crata LOC106570862 coding upstream 6954 13058887 ~ 13087209 (-)
ier5l LOC106570852 coding upstream 66056 13117989 ~ 13120296 (-)
ndor1 ndor1 coding upstream 492295 13544228 ~ 13558173 (-)
lrsam1 lrsam1 coding upstream 528411 13580344 ~ 13601020 (-)
pole3 pole3 coding upstream 556649 13608582 ~ 13612833 (-)
G369147 NA non-coding downstream 3631 13043764 ~ 13044287 (-)
G369140 NA non-coding downstream 13118 13034529 ~ 13034800 (-)
G369132 NA non-coding downstream 24447 13021781 ~ 13023471 (-)
G369121 NA non-coding downstream 46706 13000827 ~ 13001212 (-)
G369075 NA non-coding downstream 129286 12917715 ~ 12918632 (-)
G369113 NA non-coding upstream 671 13052604 ~ 13052964 (-)
G369158 NA non-coding upstream 35547 13087480 ~ 13087705 (-)
G369160 NA non-coding upstream 37395 13089328 ~ 13089813 (-)
G369172 NA non-coding upstream 56955 13108888 ~ 13109403 (-)
G369174 NA non-coding upstream 59340 13111273 ~ 13111488 (-)
G368921 NA other downstream 341826 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 911128 12134052 ~ 12136790 (-)
G365752 NA other downstream 3857820 9189669 ~ 9190098 (-)
G364754 NA other downstream 3997210 9047542 ~ 9099000 (-)
G364322 NA other downstream 4743735 8303267 ~ 8304183 (-)
G370333 NA other upstream 1155257 14207190 ~ 14208705 (-)
G370635 NA other upstream 1375405 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1941195 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2071542 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 2644159 15693396 ~ 15707607 (-)

Expression


Co-expression Network