crata (LOC106570862)


Basic Information

Item Value
gene id crata
gene name LOC106570862
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13058887 ~ 13087209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976821.1
TATTGAGTGATCGAGCTCTGGAGGGCCGGGGATGGCTGGGGTTCCAGATGGCCCCACTCCATCCAGCCAGCCCCCTGCTCCTGGGGCATTTGGGAGAGGGCCAAGGAGGGCTgaggccgacccagggagagggGACCGACCTGCAGCCTCCAGGGGCCACCACTCAGTCCAGCCAGCTCTCTGCCACCAGGGACATTTgagacaggggactgacctgcagCCTCCAGGGGCTGCCACTCAGTCCagccagctctctgccccagcgaAAGGATCAGGGAGGGCTGGCCTACTCAGACACCTTCTCCCTGGGGCCTACCTGACCTCCAGGCAGCCACTGGTGATGTCTCTGCCACTTGAGGTACCCCTGTCTGGGCCTtactcctatctctccctccttggACCTCTCTGGAGCTCCAGTCAGGCCCCCACTGACCTGGTGACCTCTCCCCCACTCAAGGCACTCCTGTCTGGTGCTTACTCCTACCTCACCTTCTCTGGAGCGCCACGCCTTATACTGCATTTCCACAGcttaagtccaaactgtaacacggccactcaggaacattcactgtcttcttgGCTAAGGACCTATGGTACAAGGTGAAACCTTGTGGCCGCCTGGTTAGGCCTGTGGCGCCCACGCGCATCCCTGGGCGCTACCTGAGCCACCAGGAGGGCCTCCCCAAGCTCCCAGTACCCTCCCTCCAGCAGACGTGTGAGCGCTACCTGGCCACCCTGGAGCCCATCGTGGATGAGGAGGAGTTGAGCCACACCAAGGAGCTGTTGGCAGAGTTCCAGAAGGCTGGGGGGGTTGGGGAGAGGCTGCAGAAGGGCCTGGAGAGAAGGGCCCGCAAGACTGAGAACTGGCTGTCAGACTGGTGGCTGACTACAGCCTATCTGGACTACCGGATGCCTGTAGTGGTCCACTCTAGTCCCGGGGTGGTCTTACCCCGCCTGGAGTTCAGTGACCGCCAGGGACAGATGAGGTTTGCTGCCAAGCTGATCGCTGGCGTTTTGGACTTCAAGACAATGATTGACAATGAGACGTTACCAGTGGAGTACCTGGGTGGGAAGCAGTTGTGTATGAACCAGTATTATCAGGTCCTGTCCTCATGTCGCGTCCCCGGCCTGAAGAGGGACTCGGTGGTCAACCATGCCCATCGCTCCAGGCCTCCCACACACATCACTGTGGTGCACAACTTCCAGttCTTTGTCCTGGACGTGTACAACAGTGATGGCACCCCGCTGACGGTGGACCAGTTGTACATGCAACTGGAGAAGGTTTGGAGCTCGTCCCTGCAGACCAACAAGGAGCCCATCGGCATCCTCACCTCTAACCAACGCAACAGCTGGGGCAAGGCCTACAACAACCTCATCAAGGATAAGACGAACAAAGACTCTGTGCAGGCCATCCAGAAGAGCATCTTCACAGTATGTCTGGATGCTCCCATGCCCTGCGTCTCAGACGAGCTGTATCACAGCCGAGCCGCTGTCCAGATGCTCCACGGTGGGGGCAGTCGCTGGAACAGTGGCAACCGCTGGTTCGACAAGACTTTGCAGTTTATCATTGGAGAGGAcgggtcatgtggtctgatgtaTGAGCACGCCCCTGCTGAAGGCCCGCCTATCGTGTCCTTGATTGACCACGTCGTCGAGTACACGAAGAAGTCTGAGATGGTGCGTACCCCCATGGTCCCCCTGCCGATGCCTCAGAAACTACGCTTTAACATCACACCAGAGATCAAGAAGGACATTGAGAAGGCCAAGCAGAACATGAACATAATGGTTCATGACCTGGATGTCAAAGTCATTGTTTTCTCCCACTTTGGCAAGAACGTTCCCAAGACCCACAAGATGAGCCCCGATGCCTTCATCCAGATGGGACTACAGCTGGCCTACTACAGgatgtATCAGCGGTGCTGTGCCACCTATGAGAGCGCGTCTCTGCGTATGTTCAAGCTGGGTCGCACCGACACCATCCGCTCCTGCTCCATCGACTCTGCTAATTTCGTCAAGGCCATGGACGACCCAGCCAAACAGAAGATAGAAAAAGTGACCCTACTGGAGAAGGCTGTGAAAGCCCACCGGGCATACACTGACATGGCGATCCATGGCCAGGCCATAGACCGACACCTTCTGGGGCTGAAGCTGCAGGCCATCGAAGACCTGACCTCCATGCCTGAGATCTTCATGGACACCTCGTACGCTGTGGCCAACCACTACAATCTTTCCACTAGCCAGGTGCCAGCCAAGACTGACTGTGTGATGTGCTTCGGACCCGTGGCACCCGACGGCTATGGCGTGTGCTACAACCCCATGGCAGAACACATCAACTTTGCTGTGTCGGCGTTCAACAGCTGCAATGAGACCAATGCGGCCCACATGGCCCAGAGGCTGGAGGAGGCCTTGCTGGACATGAGGATGTTGCTGGAGAGCACCCCCAAGGCCAAGCTGTGAGAGGCAAACCAAGATAGACCTAGTTCAGGGTCAGACTAGGCTTGGCTGAACACTGCTCCAGACTTAGGCCACCACAGACTGTCTGATAAAAGACAGCTTAAGACCGCTTCAGATGGTCCAAGGCCTATGCCACCATTGACCGCTCGCCTCAGACCTGGTTCAGAGCCCGGCCAGGCCACCACAAACTGATACAAGATCGATTAATACCGCTTCAGACCAGATTCAGGTGTTTTAGCTAGTACATGGTTGCCATCATTACAATTGCAGTTTGGTGTACAACATCAGTTTGATGGCGTGTTGTTTATATGACAGGTTGAAAGATTTATTGACTGCAATATTAAGACTTAAATTCACATTCATTGTTCATCAAAAAAAATTATGCAGGTTTACTTGTACAGATCGAATCGTATTCTTTGTATTGCAATCATCATTGTGGATGAGCCTGTGGCAAAacaatagcctggtcccagatttattTCTGCACAAGACCATAGGTGTTGGCAagacggcacaaacagatctggaaacAGGTTAGCAAAATAGTTTGAGGAGTGGAGTGGATCACTAAAAAGAGATTGAATCATTATGGCTGTGTTGAAATTGTGTATAATTAAATTATGAACAGTATGTTTGAGATTGTAGCAAATACAGTGCACGTTATTTGGAAGAGCAAGTGTTTGAGTGGGATACTGGAACTTTGTACCTGCCTTGCCTTCTAGGATttccttttaatttttttacacTAATTGTGTAAATACCAGTGTTGGTGAAGCTACtcaaatatagtttaccaagctaccaattacttcacactggaagaaggtAAGCTACACTAGTTACCCATAGTAAAACTatagttactttgaaaaagtagttcactacatccaaactactttgtgaataagtatatgtaaatactgtaaaatgtagttaaattactagAACTAtgtgtagttcactactccccaacactggtaAATACAGACATTTGAATTTTGAAGGtacttgtgtgtctgtctgggttcTGAATGCTGTAAATAGCACTGGTTATGTACTTAATGCTGGTTATTAACATTAAACAATTGTTTATGAAAATCA
>XM_021601730.2
CCCTGGTGAATGGAACTGGGACCGGCGAGGAGATCATGTTACCAAAAGGTGTCAACGTAGTGAAGCTGTAACTGCGCTAGCTAGTACTATCTTTGGCGTTGTTGTTTTGAAGGGTGTTCCTGAAGTAACTATTCGCCCTTGAATACGCTTTGTGGTCCGTTCATTGGAGTTCAGCTGGGAATGAGAAACCGATTCATTCCTGTACTTTGAGCACCGAGCATTTGTGGGCGGATCTTTCCGAATCATCCAGAATGTTGGGCATTTTAGCCAGGACGATGGCTAAGGACCTATGGTACAAGGTGAAACCTTGTGGCCGCCTGGTTAGGCCTGTGGCGCCCACGCGCATCCCTGGGCGCTACCTGAGCCACCAGGAGGGCCTCCCCAAGCTCCCAGTACCCTCCCTCCAGCAGACGTGTGAGCGCTACCTGGCCACCCTGGAGCCCATCGTGGATGAGGAGGAGTTGAGCCACACCAAGGAGCTGTTGGCAGAGTTCCAGAAGGCTGGGGGGGTTGGGGAGAGGCTGCAGAAGGGCCTGGAGAGAAGGGCCCGCAAGACTGAGAACTGGCTGTCAGACTGGTGGCTGACTACAGCCTATCTGGACTACCGGATGCCTGTAGTGGTCCACTCTAGTCCCGGGGTGGTCTTACCCCGCCTGGAGTTCAGTGACCGCCAGGGACAGATGAGGTTTGCTGCCAAGCTGATCGCTGGCGTTTTGGACTTCAAGACAATGATTGACAATGAGACGTTACCAGTGGAGTACCTGGGTGGGAAGCAGTTGTGTATGAACCAGTATTATCAGGTCCTGTCCTCATGTCGCGTCCCCGGCCTGAAGAGGGACTCGGTGGTCAACCATGCCCATCGCTCCAGGCCTCCCACACACATCACTGTGGTGCACAACTTCCAGttCTTTGTCCTGGACGTGTACAACAGTGATGGCACCCCGCTGACGGTGGACCAGTTGTACATGCAACTGGAGAAGGTTTGGAGCTCGTCCCTGCAGACCAACAAGGAGCCCATCGGCATCCTCACCTCTAACCAACGCAACAGCTGGGGCAAGGCCTACAACAACCTCATCAAGGATAAGACGAACAAAGACTCTGTGCAGGCCATCCAGAAGAGCATCTTCACAGTATGTCTGGATGCTCCCATGCCCTGCGTCTCAGACGAGCTGTATCACAGCCGAGCCGCTGTCCAGATGCTCCACGGTGGGGGCAGTCGCTGGAACAGTGGCAACCGCTGGTTCGACAAGACTTTGCAGTTTATCATTGGAGAGGAcgggtcatgtggtctgatgtaTGAGCACGCCCCTGCTGAAGGCCCGCCTATCGTGTCCTTGATTGACCACGTCGTCGAGTACACGAAGAAGTCTGAGATGGTGCGTACCCCCATGGTCCCCCTGCCGATGCCTCAGAAACTACGCTTTAACATCACACCAGAGATCAAGAAGGACATTGAGAAGGCCAAGCAGAACATGAACATAATGGTTCATGACCTGGATGTCAAAGTCATTGTTTTCTCCCACTTTGGCAAGAACGTTCCCAAGACCCACAAGATGAGCCCCGATGCCTTCATCCAGATGGGACTACAGCTGGCCTACTACAGgatgtATCAGCGGTGCTGTGCCACCTATGAGAGCGCGTCTCTGCGTATGTTCAAGCTGGGTCGCACCGACACCATCCGCTCCTGCTCCATCGACTCTGCTAATTTCGTCAAGGCCATGGACGACCCAGCCAAACAGAAGATAGAAAAAGTGACCCTACTGGAGAAGGCTGTGAAAGCCCACCGGGCATACACTGACATGGCGATCCATGGCCAGGCCATAGACCGACACCTTCTGGGGCTGAAGCTGCAGGCCATCGAAGACCTGACCTCCATGCCTGAGATCTTCATGGACACCTCGTACGCTGTGGCCAACCACTACAATCTTTCCACTAGCCAGGTGCCAGCCAAGACTGACTGTGTGATGTGCTTCGGACCCGTGGCACCCGACGGCTATGGCGTGTGCTACAACCCCATGGCAGAACACATCAACTTTGCTGTGTCGGCGTTCAACAGCTGCAATGAGACCAATGCGGCCCACATGGCCCAGAGGCTGGAGGAGGCCTTGCTGGACATGAGGATGTTGCTGGAGAGCACCCCCAAGGCCAAGCTGTGAGAGGCAAACCAAGATAGACCTAGTTCAGGGTCAGACTAGGCTTGGCTGAACACTGCTCCAGACTTAGGCCACCACAGACTGTCTGATAAAAGACAGCTTAAGACCGCTTCAGATGGTCCAAGGCCTATGCCACCATTGACCGCTCGCCTCAGACCTGGTTCAGAGCCCGGCCAGGCCACCACAAACTGATACAAGATCGATTAATACCGCTTCAGACCAGATTCAGGTGTTTTAGCTAGTACATGGTTGCCATCATTACAATTGCAGTTTGGTGTACAACATCAGTTTGATGGCGTGTTGTTTATATGACAGGTTGAAAGATTTATTGACTGCAATATTAAGACTTAAATTCACATTCATTGTTCATCAAAAAAAATTATGCAGGTTTACTTGTACAGATCGAATCGTATTCTTTGTATTGCAATCATCATTGTGGATGAGCCTGTGGCAAAacaatagcctggtcccagatttattTCTGCACAAGACCATAGGTGTTGGCAagacggcacaaacagatctggaaacAGGTTAGCAAAATAGTTTGAGGAGTGGAGTGGATCACTAAAAAGAGATTGAATCATTATGGCTGTGTTGAAATTGTGTATAATTAAATTATGAACAGTATGTTTGAGATTGTAGCAAATACAGTGCACGTTATTTGGAAGAGCAAGTGTTTGAGTGGGATACTGGAACTTTGTACCTGCCTTGCCTTCTAGGATttccttttaatttttttacacTAATTGTGTAAATACCAGTGTTGGTGAAGCTACtcaaatatagtttaccaagctaccaattacttcacactggaagaaggtAAGCTACACTAGTTACCCATAGTAAAACTatagttactttgaaaaagtagttcactacatccaaactactttgtgaataagtatatgtaaatactgtaaaatgtagttaaattactagAACTAtgtgtagttcactactccccaacactggtaAATACAGACATTTGAATTTTGAAGGtacttgtgtgtctgtctgggttcTGAATGCTGTAAATAGCACTGGTTATGTACTTAATGCTGGTTATTAACATTAAACAATTGTTTATGAAAATCA

Function

NR:

description
carnitine O-acetyltransferase

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00624 E2.3.1.7; carnitine O-acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976821.1 False 3555 mRNA 0.52 13 13058887 13085609
XM_021601730.2 True 3254 mRNA 0.50 13 13058887 13087209

Neighbor

gene id symbol gene type direction distance location
cdk9 cdk9 coding downstream 6954 13047918 ~ 13051933 (-)
crb2a LOC106570879 coding downstream 32732 12985005 ~ 13026155 (-)
LOC110523222 LOC106570907 coding downstream 263805 12782216 ~ 12795082 (-)
nek6 LOC106570951 coding downstream 324417 12647930 ~ 12734470 (-)
LOC110523215 znf79 coding downstream 693284 12362672 ~ 12365603 (-)
ier5l LOC106570852 coding upstream 30780 13117989 ~ 13120296 (-)
ndor1 ndor1 coding upstream 457019 13544228 ~ 13558173 (-)
lrsam1 lrsam1 coding upstream 493135 13580344 ~ 13601020 (-)
pole3 pole3 coding upstream 521373 13608582 ~ 13612833 (-)
zgc:55461 tubb4b coding upstream 679276 13766485 ~ 13770596 (-)
G369113 NA non-coding downstream 5923 13052604 ~ 13052964 (-)
G369147 NA non-coding downstream 14600 13043764 ~ 13044287 (-)
G369140 NA non-coding downstream 24087 13034529 ~ 13034800 (-)
G369132 NA non-coding downstream 35416 13021781 ~ 13023471 (-)
G369121 NA non-coding downstream 57675 13000827 ~ 13001212 (-)
G369158 NA non-coding upstream 271 13087480 ~ 13087705 (-)
G369160 NA non-coding upstream 2119 13089328 ~ 13089813 (-)
G369172 NA non-coding upstream 21679 13108888 ~ 13109403 (-)
G369174 NA non-coding upstream 24064 13111273 ~ 13111488 (-)
G369176 NA non-coding upstream 26048 13113257 ~ 13113545 (-)
G368921 NA other downstream 352795 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 922097 12134052 ~ 12136790 (-)
G365752 NA other downstream 3868789 9189669 ~ 9190098 (-)
G364754 NA other downstream 4008179 9047542 ~ 9099000 (-)
G364322 NA other downstream 4754704 8303267 ~ 8304183 (-)
G370333 NA other upstream 1119981 14207190 ~ 14208705 (-)
G370635 NA other upstream 1340129 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1905919 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2036266 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 2608883 15693396 ~ 15707607 (-)

Expression


Co-expression Network