ptpa (ptpa)


Basic Information

Item Value
gene id ptpa
gene name ptpa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13089727 ~ 13107713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976822.1
CGCGCCATCTTCTCCATTGGCTTCCtttcatcaccatatttggtagtgagtggaaacgccaaccggatgcttcacatttatacatccggtgagaTATCTGGCTGTACCGCAATTCTTGTAAACATGGCGGAGACTGAACACCATTCAGGCTCCTCCCCCGAAGATGACTCACCACCGATCCCTGTCTGTCAGAACTTCATGGTGCCCAAAAAGGAGATCAGCATGTTTCCTGATATGGGGAAGTGGAAACGTTCCCAGGCGTATGCTGATTACATGGGATTCATTCTGACGCTGAACGAGGGAGTGAAGGGGAAGAAACTTACATGTGAATACAAAGTGTCTGAGACCATAGAGAAGCTTCTGGCTCTGTTGGGGACTCTGGACCGCTGGATAGATGAGACCCCTCCTGAAGACCAGCCCTCTCGCTTCGGCAACAAGGCCTACAGGACTTGGTACGCCAAGCTCGACCAgGAAGCAGAGGGCCTGGTTGCAGCAGTCATCCCAGAAGACAAGGTAGCTGCGGCTCCAGAGATAGCTGTGTATTTGAAGGAGGCGGTGGGGAACTCCACCAGGATAGACTATGGAACAGGTCACGAGGCTGCCTTTGCCATCTTCCTCTGCTGTCTCTGCAAGATCGGAGCTCTCAGGGTAGATGACCAGTTGGCCATCATTTTCAAGGTGTTTGACAGGTATCTGGTGGTCATGCGCAAGCTTCAGAAAACCTACAGAATGGAGCCTGCTGGCAGCCAGGGGGTCTGGGGGTTGGATGATTTCCAATTTCTACCTTTCATATGGGGCAGCTCCCAGTTTGTAGACCACCCCACGTTGGAGCCCAAGCACTTTGTCGATGAAAAAGTGGTCAACGAGAATCACCACGACTACATGTTCCTGGAGTGTATCAAATTCATTAATGAGatGAAAACTGGTCCGTTTGCTGAGCATTCCAATCAGCTGTGGAACATCAGCGCTGTCCCCACCTGGTCCAAAGTCAACCAGGGCCTGATCCGAATGTACAAGGCAGAGTGCTTGGAGAAGTTCCCTGTTATTCAGCACTTCAAGTTTGGCAGTCTCATCTCCATCCAGCCTGTGAAGCCCTGACGGCCATCCAAAGAAACCATGTGTGTGACGGAGAGACCAAACTCCCAACATCCCTTGAGGATGAACGCCCGATCCTCACCCAAGAAAGATCCCCAAATTCATCCCTAATATTAGCACAGACACCAACCCCAAAATCTGTCTCTTTCGAGAACAAATACCCTCCCCAAATTGCCAATGACGGCACCACGATCATCAGTGACTCAATTTGGTTTTGTTTTGTTGTCTTTCTGTCCCCCTGAAGATTGAAGcgttttttgtgtgtatgtgtgtctctgtgtaagcGTGTTATGGAAAGCTGTCAGTCATTCTCAATGCAATACTGAGAGTGTGTGCACCTTTATTAGTGTGTCTATTTATTTCTATAAATGTATGAATGTtgaccagggttgtgttcattaggcaccaaatggaagaaaatggactgaaagAGGGGACTAACTGAACCTGTCCAATAAGtaacacattttttgtttttctGTTGCGTAATATTTTGGAACGTTTTCCATTGTGTGCTCTAATGAACACTCCCCTGGTGTAGCAGGGATAGGTTAGCCTTGTTGGATAAACATTGCCGAGACAAGAGCTTGGCTTTACTGTGAGTGGCCTGATGTGTATAGCTCCTACCCCATACTGGACACTTGAGTCTTGAGACAGAGCTGTTTTTTTTACAACAGGTTGTGATATAAATGTGTTTCTCTGATTATTTGAGATATTCTAAATTCTTTAGCAGTTCTGATTTTTGTTTTGAGTGTCCACTGATGTTTTGACCAACTGTTTTCAGTTTTGTTGCATAATGTGTCTGTCATTATTGCCTGTATGATCATCTAAGTTGTAAGTCATATTATAATAATTTGTTAATTTTG

Function

symbol description
ptpa Predicted to enable peptidyl-prolyl cis-trans isomerase activity and protein tyrosine phosphatase activator activity. Predicted to be involved in mitotic spindle organization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PTPA (protein phosphatase 2 phosphatase activator).

NR:

description
serine/threonine-protein phosphatase 2A activator

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0019211 phosphatase activator activity molecular_function

KEGG:

id description
K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976822.1 True 1961 mRNA 0.46 10 13089727 13107713

Neighbor

gene id symbol gene type direction distance location
LOC110523223 LOC106570883 coding upstream 111388 12802832 ~ 12978339 (+)
psmb7 psmb7 coding upstream 442321 12627072 ~ 12647406 (+)
nr5a1b LOC106570956 coding upstream 497510 12574579 ~ 12592217 (+)
LOC110523216 LOC106570966 coding upstream 529141 12370910 ~ 12560586 (+)
LOC110523213 LOC106571108 coding upstream 768151 12317108 ~ 12321576 (+)
ntmt1 ntmt1 coding downstream 432257 13539970 ~ 13543920 (+)
fkbp15a fkbp15 coding downstream 450041 13557754 ~ 13582939 (+)
rpl12 rpl12 coding downstream 495496 13603209 ~ 13606051 (+)
LOC118964769 NA coding downstream 496616 13604329 ~ 13604454 (+)
LOC118964767 NA coding downstream 497031 13604744 ~ 13604869 (+)
G368432 LOC106570862 non-coding upstream 23979 13060798 ~ 13065748 (+)
G368424 NA non-coding upstream 33829 13055357 ~ 13055898 (+)
G368422 NA non-coding upstream 36794 13052507 ~ 13052933 (+)
G368413 NA non-coding upstream 54729 13034772 ~ 13034998 (+)
G368387 NA non-coding upstream 118831 12965050 ~ 12970896 (+)
G368441 NA non-coding downstream 2340 13110053 ~ 13110260 (+)
G368445 NA non-coding downstream 7509 13115222 ~ 13115465 (+)
G368450 NA non-coding downstream 20947 13128660 ~ 13129188 (+)
G368451 NA non-coding downstream 26643 13134356 ~ 13134770 (+)
G368456 NA non-coding downstream 33100 13140813 ~ 13141299 (+)
G367684 NA other upstream 1209692 11878329 ~ 11880035 (+)
G366973 NA other upstream 1661017 11425642 ~ 11428710 (+)
G366748 NA other upstream 2112575 10976682 ~ 10977152 (+)
G365197 NA other upstream 3240573 9848703 ~ 9849154 (+)
G364850 NA other upstream 3860496 9228838 ~ 9229231 (+)
G368440 NA other downstream 983 13108696 ~ 13109134 (+)
G369763 NA other downstream 657534 13765247 ~ 13769296 (+)
G370360 NA other downstream 1148090 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 1213391 14321104 ~ 14325895 (+)
G370414 NA other downstream 1259959 14367672 ~ 14368161 (+)

Expression


Co-expression Network