ier5l (LOC106570852)


Basic Information

Item Value
gene id ier5l
gene name LOC106570852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13117989 ~ 13120296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601733.2
AATGATTGCTTGCTCGCATACAGAGGGAAGCGGACAGCCGTGTTCAATGTTTCACTACCGAGCTGACTTAAGCCTTCGCCCCCGAACGAAATATCGTGACTTCCACTAAGAGAAAGTCGCTTTTCTGAGTCGGAGAGGAGCGGAAACGACTATATCACCACCATGATCAACACGATGGAGTGTGCAGTGGATGCACAAAGTCTAATCTCAATTTCCTTACGGAAGATTCACAACTCCAGGACGCAGAGAGGAGGCATCAAGCTGCACAAAAACCTCCTGGTCTCCTATGTACTGAGGAACGCCAGACAGGTCTACATGAACGAGAAGTACGCGGAGATCTACAGGATGCAGCAGTACGAGGAGGTGATGACCGTCTGCAACGAGATCCAGGAGTTAAACCCGCTGGATTTGGCCGAGGACTGCGAGGAGCAGAGCGGGGATTGCTGCGGCAACGACGGGGTGAGCGAACCGGCGAGTCTCTGCTGTGCGCTGCTGCCAGTAAGCCACCTAACAGCAGTGCAGTCAGCGCATATCCAAGCCCCATCCGCCTGCTccgcgcctctctctctccaaagcgACGATGTCTGCAAGGAGACAGAGCCCTCGTTCTACCGGAGCTGTTGTGCGGAGGCTTACCCTGTATCGAATTGGGACTTTTCCACGGTGAACAACAACCTACACTGCAACAAAACGACAGTGCTCGATCTGGACACGCACGTAGTGACCACTGTGGAGAATGGGTACCTTCACCAGGACTGCTGCGCGTCGTTTCAACAGTGCTGCCAGGGCGCACAGTCCCCAGCCAAGAAACGCAAGGTTGACTTTGAATATTATATATCCGATATTGAGGAAGTACCGGATTTTACGCCATGTAAAAGGGCGAAATTCGAGGACTGTTCCTACGCAAATTCGGAACACTTGGACACGTCAAACATTTCCAATCTGATCTCGATTTTCGGCTCGGGGTTTTCGGGGCTGGTGAGCAGACAGGCGGACTTTGAGCAAGCCTTGAACGGACAGTTCTGTAGCAAACAAGCCCTAGCGAGCCTAGGGGCATGGACCAGAGCTATTGTAGCTTTTTGACTCCATGGTCAACTAGAATCAAACACTTTATGAAATTGTACAAAGTCTAAATCAAATTGACTTTATTTTTGCAAGAAATGCTATTTAAACATTGAACAGTTTTTGTTTGTTAACTCGTTTTTACGGAGATATGGTTGTGCCACATGACGTGCAGGCGTTTCCTTTTAAACCGAACATGTCTACataacacatttttacatggTAGTTGTGAATTTTTATCTAACGAAGTTGATTTCGTTGCCTTAAACCCAACGCATACTACTGCTAGCTATTGTTGCATACATTGAAAGTGGTTGAATGTCTCGCTCGCGGATTGTTTTGATTTGATCTCTCCTCCAGAACACTTTTGAACACAATGTATCGTTTTTAAGACGCTACACAAGTATTGTGACTGAATAGCAAGCATTTAATGTAGCCTCAGCTCCAGGCTAAATAGAAAAGTGTGCCCATGGATGGCTTTGCAACATGCTTTTGTTGTGCGTAGTGGTTTAATACGGTAAACAACTAACAAAAAGTTAACCATATGCTACACAAGTACTGTTGTGTTGTACTTGGTTTACTATATTGTATTTATGGGTTGATATTTAAACCTTGGATATCGAAACTCATATTCTAAAGAGTCGGACACCAGTAGTAGGCTATGTTACATGGAAACTACATGGCACATTCTGACCACACATAAATTGACAGGTGAAGGCGCAATGGCTCAGACTTAAATTTCCCTCTCAAACTCGTGGGTGCATTCACTCTGAACCAGCTTGCTGCGTCTCTCTCTATTGATGTACTTGTTGTAGGCTACCCAACTTCCCACCTCATCTCTGATCAGAACCATTAATTCCTCCAAATCCCAGAATGCACGTGTAATCGAATCAATCCAGGTATTTTTTTGACAGTTCGATCTGTTGAGCGTTCCCCCTAAACCTATAACAAAAAGTTACTGATCAAGCCTTCACAGTAATTCATGATGCCAACATGGCTTGGTTTTGTGAATTTTATTTTCAAAAATTTTAAGACCTTTTGTTCTAAAAAGGCAAGCTCATAATTTTGCCATACATCCACACATTATAAGCACTATGTGTACTGAAATAAAGATGTCTTTCACACGTCCTCTCCATATTTTGTTGCTATTCTTGTATTTTTGTGCATATTAAATTGTATATCACCGGGTAAAACTGTTTTAGAACATATTTGTTAAGAATTTATAATCTTAATAAAAATTTTAAAA

Function

NR:

description
immediate early response gene 5-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601733.2 True 2308 mRNA 0.44 1 13117989 13120296

Neighbor

gene id symbol gene type direction distance location
crata LOC106570862 coding downstream 30780 13058887 ~ 13087209 (-)
cdk9 cdk9 coding downstream 66056 13047918 ~ 13051933 (-)
crb2a LOC106570879 coding downstream 91834 12985005 ~ 13026155 (-)
LOC110523222 LOC106570907 coding downstream 322907 12782216 ~ 12795082 (-)
nek6 LOC106570951 coding downstream 383519 12647930 ~ 12734470 (-)
ndor1 ndor1 coding upstream 423932 13544228 ~ 13558173 (-)
lrsam1 lrsam1 coding upstream 460048 13580344 ~ 13601020 (-)
pole3 pole3 coding upstream 488286 13608582 ~ 13612833 (-)
zgc:55461 tubb4b coding upstream 646189 13766485 ~ 13770596 (-)
glipr2 LOC106570345 coding upstream 661801 13782097 ~ 13797656 (-)
G369178 NA non-coding downstream 2960 13114736 ~ 13115029 (-)
G369176 NA non-coding downstream 4444 13113257 ~ 13113545 (-)
G369174 NA non-coding downstream 6501 13111273 ~ 13111488 (-)
G369172 NA non-coding downstream 8586 13108888 ~ 13109403 (-)
G369160 NA non-coding downstream 28176 13089328 ~ 13089813 (-)
G369182 NA non-coding upstream 499 13120795 ~ 13121052 (-)
G369183 NA non-coding upstream 5253 13125549 ~ 13125749 (-)
G369186 NA non-coding upstream 8490 13128786 ~ 13129087 (-)
G369193 NA non-coding upstream 16237 13136533 ~ 13136884 (-)
G369197 NA non-coding upstream 24311 13144607 ~ 13144888 (-)
G368921 NA other downstream 411897 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 981199 12134052 ~ 12136790 (-)
G365752 NA other downstream 3927891 9189669 ~ 9190098 (-)
G364754 NA other downstream 4067281 9047542 ~ 9099000 (-)
G364322 NA other downstream 4813806 8303267 ~ 8304183 (-)
G370333 NA other upstream 1086894 14207190 ~ 14208705 (-)
G370635 NA other upstream 1307042 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1872832 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 2003179 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 2575796 15693396 ~ 15707607 (-)

Expression


Co-expression Network