ndor1 (ndor1)


Basic Information

Item Value
gene id ndor1
gene name ndor1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13544228 ~ 13558173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601739.2
GTCGTAAAGCGCAAACACAACAACACGCTGGAGGAAATGTAGTCCTAGTCGAAGAAAGGAGTTTTTCAGTATTATTAGATTCACTTTCGAGATTGTCAAAGACCCCTAGGATAATCTGTTATAGCTACCTTAGTGAGAATGTCAGCCCCAAAGCTGTTGATTCTATATGGGAGCCAGACGGGCACTGCCCAGGACACGGCCGAGCGGATTGGACGTCAGGCGCAAAGGAGGCGAATGCAAGTCAAAGCGGAGGCTCTTGACAGTTACAATGTGGCTAACCTCATCTCTGAGTCCCTGGTTGTATTTGTGTGTTCCACCACTGGCCAAGGAGATCCACCAGACAACATGAAGAATTTCTGGCGGTTCGTGTTTAGGAAGTCTCTCCCCGCTGGATCTCTGTGTCGCCTAGACTGTGCCGTGCTGGGCTTGGGTGATTCCTCCTATCCCAAGTTCAACTTTGTGGCGAAGAAGCTTCACAAGCGCCTTATGCAGCTGGGGGCCAGTGTGCTGCTGCCTGTGGGACTGGCAGATGACCAGCACGACCTGGGCGCAGATGGGGTGATTGACCCCTGGCTCACGTCATTCTGGGAGAGGGCGCAAGCTCTATATCCAACACCTGCAGGCCAGAGTCTTATCAGTGTGGATGAACCACTCCCTCCGAGGTACGTTTTCAGATTTCTGGATGACGTCACTGAGAATAGGGCGGATAGGCGAAGAGTGCCAGAGCCGCCGATCTCGCCCTCTCAGACACACACCTTTCCAGGCAGGGTGGTGTCCAATAAAAGGGTTACGCACGCCTCCCACTTTCAGGATGTTCGACACATTGAGTTTGACATCACAGGCTCAGATATTGAGTTCACTGCTGGGGATGTGGTGATGATGAGACCTTGTAACACCCCTGAGGACGTGGAGCAGTTCTGTCAGCTCCTGAGACTGGACCCTGATCGCCAGTTCACCCTCAGCCCCACAAACTGCGACACAGATTCGGTCCCAGCCCGCCTGGCCCAACCTTGCACGGTTCGGCATCTGGTGGAGAGCTTCCTGGACATAGCCGCAGTGCCTCGTCGCTCCTTCTTCGAGCTCCTCGCCACCTTTGCCACCAATGAGCTGGAGCGGGAGAAGCTGTCTGAGTTTAACTCTGCCCAGGGCCAGGACGAGCTGCATGCCTACTGCAACAGGCCGCGACGCACCGCCTTGGAGGTGTTGACCGACTTCCCCCACACGACAGCAGAGCTGAGTGTAGACTACCTACTGGACCTGTTCCCTGAGATTCAGCCTCGCTCCTTCTCCATTGCCTCCTCCCTGCTGGCACATCCCAACAGGATCCAGATACTGCTAGCTGTGGTGCACTACAAAACCAAGATGCACCTGCCACGCAAGGGTCTGTGTTCCTCCTGGCTAGCCTCACTGGACCCCACACAAGGGGACGTTTATGTGCCTTTGTGGGTGAAGAAGGGGAGTATGAAGTTCCCTAAGGACCCCTACTCCCCTGTGATCATGGTTGGGCCTGGAACGGGAGTGGCTCCTTTCAGGTCTGCTCTGCAGGAGAGGATAGCCCAGGGCAAGACTGCCAATGTGCTGTATTTTGGCTGCCGGTCCCAGTCTAAGGATTTCTACTGCAGCTCAGaatgggaggagatggagaaagcAGGGCAGCTGACACTCTTCACAGCTTTCTCCAGGGATCAGGAAGACAAGATTTATGTGCAACAGCGTGTGCAGGAGCAAGCTGAGCTGCTATGGGACCTGATCGCCAATAAGAACGGCTACTTTTACATCGCAGGCAATGCCAAACAGATGCCGACGGCAGTGTGTGACGCCCTGAAGGAGGGCTTTCAGAGCCAAGGGGGCGTGTCCTCTGCCGAGGCGGACGAGATGCTGGTCGCCATGGAGAGGGCAGGCCGATTCCAAAGCGAGACCTGGTCCTGATCACATGGCTACAGAGTGGTGCTATTCAAACGCAGCAAGCTTTATCAGTATACTGCTCCAAGTGCTTTCATTTGACAATCAGTGGTGACTTAACTGCAGAGGAAATCAACACCATACCATGGTTTAGGTATCAGCTTAGAAAATGTGTCaaatattactagatattatacTATTGCAACACTGCATAGCGCTATTAAATGTTTCCAAAGTGTA

Function

symbol description
ndor1 Predicted to enable FMN binding activity; flavin adenine dinucleotide binding activity; and oxidoreductase activity. Predicted to be involved in cell death and cellular response to menadione. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytosol. Orthologous to human NDOR1 (NADPH dependent diflavin oxidoreductase 1).

NR:

description
NADPH-dependent diflavin oxidoreductase 1 isoform X1

GO:

id name namespace
GO:0008219 cell death biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0036245 cellular response to menadione biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601739.2 True 2142 mRNA 0.54 15 13544228 13558173

Neighbor

gene id symbol gene type direction distance location
ier5l LOC106570852 coding downstream 423932 13117989 ~ 13120296 (-)
crata LOC106570862 coding downstream 457019 13058887 ~ 13087209 (-)
cdk9 cdk9 coding downstream 492295 13047918 ~ 13051933 (-)
crb2a LOC106570879 coding downstream 518073 12985005 ~ 13026155 (-)
LOC110523222 LOC106570907 coding downstream 749146 12782216 ~ 12795082 (-)
lrsam1 lrsam1 coding upstream 22171 13580344 ~ 13601020 (-)
pole3 pole3 coding upstream 50409 13608582 ~ 13612833 (-)
zgc:55461 tubb4b coding upstream 208312 13766485 ~ 13770596 (-)
glipr2 LOC106570345 coding upstream 223924 13782097 ~ 13797656 (-)
si:dkey-220k22.1 LOC106570374 coding upstream 334763 13892936 ~ 13973261 (-)
G369546 NA non-coding downstream 29918 13514111 ~ 13514310 (-)
G369540 NA non-coding downstream 33549 13510452 ~ 13510679 (-)
G369522 NA non-coding downstream 63547 13477611 ~ 13480681 (-)
G369447 NA non-coding downstream 103868 13381967 ~ 13440360 (-)
G369479 NA non-coding downstream 169359 13368697 ~ 13374869 (-)
G369649 NA non-coding upstream 11150 13569323 ~ 13569573 (-)
G369651 NA non-coding upstream 13031 13571204 ~ 13571423 (-)
G369643 NA non-coding upstream 16839 13575012 ~ 13575282 (-)
G369653 NA non-coding upstream 19021 13577194 ~ 13577495 (-)
G369641 NA non-coding upstream 47371 13605544 ~ 13606052 (-)
G368921 NA other downstream 838136 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 1407438 12134052 ~ 12136790 (-)
G365752 NA other downstream 4354130 9189669 ~ 9190098 (-)
G364754 NA other downstream 4493520 9047542 ~ 9099000 (-)
G364322 NA other downstream 5240045 8303267 ~ 8304183 (-)
G370333 NA other upstream 649017 14207190 ~ 14208705 (-)
G370635 NA other upstream 869165 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1434955 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 1565302 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 2137919 15693396 ~ 15707607 (-)

Expression


Co-expression Network