LOC118964562


Basic Information

Item Value
gene id LOC118964562
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13613034 ~ 13644128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051642.1
AGCTGTTGGTGGGAAGAAATGACTAGATGCGTTTGTCAAATTGACGTCTATAAAGTTTTATACAATTTATTTTTTGCTAACCTTAACCAAAtgttcctaacctgctacgttaattatcccaACCTGCCGCGAAAAattctaacctgctacgaaaagtcaattCTGGTCAGTTTTGACTGTATCTACATTGTCAAAACcaggaaacagtgacacactgctcATGCGCTATAGACCCTTTTAAATCTTCACCCGATCAGACGACGATCACCCCATTGAAAGGTGTGATTGGTAAAATGATTTCCTTTTAATGGGGTGATTGTCTAATCGGGTGGAATCTTGGACCCTTGACCAGACCGTTGTGTGGCGGCCCAGgcatatttttgttattttggttgtAGTGAGCACAGTCAAACAGTTGTAGAGAACGCCAGCTACTGTGATACAATGAATTCAACTTTGAATATCAAGATGAGGTCATCGAAAGGCTCGTGTTGCTGTGTTTACGGGTGTTCGTTGAGACCTGCAACAAACTATAAACCAAGTTTTTAGATTTCCGAAAGAAAGTGGACCACTGCTATGAATAAAGATGGTTGGCTACCAACAGCAAATTCGAAGAATTTCAGTGCACGCTTAATTACAGgacACAGTACCTCATCGACGCAGAGAGTCCCCAGAACCTTATCGATGCAGAGAGTCCCCAGAACCTTATCGACGCAGAGAGTCCCCAGTACCTTATCGACGCAGAGAGTCCCCAGTACCTTATCGACGCAGAGAGTCCCCAGTACCTTATCGACGCAGAGAGGCCCCAGTACCTTATCGACGCAGAGAGGCCCTCTTACAGAATTTCCCTGCCAAGGGCGCTGTGGGACTAATTTCCAGCGTGTGTGTTGCTGTTTATGTCTGGCTGGCACTATCTAGTCTAGTTCTCCCCCTCACGTGAGAGATTTTGATCACCTCCAGCTCATGGCTTCAGCCAATCAGACTGTCCCCATGCACCCCACATTTTGCCCATGCATCCTGTGATTGGTCAGATGCTCATATCTAGCTCAGCACTGGCCAGTCGGGACCGTTGAATGCTCTTCAAAGTGTATAAATATTCCCCTGAGCTTGACGTGTGATCATGGGTGGAGTTATGTACATGGGATGTGTGCCACAAAGTAAGTTGTTGTTTAGCTTTGATTTGAATTTCACTATGTAGATATTACAATGTTATATGCTGAAGTTGTTGTTAGTATTGGCTATTATTACCTTTTAGTGTACTTTCTATGTGTAATAATTGCTATTTATGTTGCCTATTTGTATAGCCTCACTGTATGGTTATACTGTTGTTATTATTGTACTACTGGTTATTAGATGCAGTCCTGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCGGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCGGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCGGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCGGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCGGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCGGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCTGTTGTTATTATTGTACTACTGGCTATTAGATACAGTCCTGTTGTTATTATTGTACTACTGGTTATTAGATACAGTCCTGTTATTATTGTACTACTGGTTATTATTGTCTCATCTGCCCCGGAACCGTTGCCAGGTGTGACTGTGACTATTAGGTGTGACTATATTGTCTATCCAGCCCCGGCACCGTGGTCAGACACGGCTGCAATTGAGACCGGGCAGGGACCTCGGCCCCCTCTGGTCCTGAGGAGTCACCTGCTACAGAGACTGAGCCCACACCAGATATCATTCCCGATCCCCCCCCTCCGCTGTCGAGGAGTCTGGGGGAACCTTCTCCCCAACTTGGGCGGCCTATGAGATTCCTGCAGCATCGCCACACGATAGTGAGCCTATATTGCTGACTGGACCCTATTTCTCACCACCACCAGATCATCACCAGCCAAATCTACCGGGGTGACCACTAAGACATCACCCTGTGACCTGTCCCAGAGGCACGACCCATTCCTGCTCCTGGGGTCCAAGCTGATCCACCATCTGCCCTGGATTTACCAGCACTGCCTCCTAATCTGGCCCTGACCCTGGATCTTCCGTTGGTGCCTGCTCCAAGGCTTGCCCTGGGCCCTCCTCAGGTTCCTGCACTGAGAGCACATCGCGTGCCTGCTCTCCACTGCTGGGGCCTGGCCTGCCTCAGTTGGGGAGCTGCCGCCGCTGGgggtgctctcctctctcctcccaagCAATGGACACaatggtcgcatacacatattttgcagatgttattgagggtgtagtgaaatgttgttttcctagctccaacagttctAGGGGTGGCTGTTACAAATTCCCTGCCTATGACTGTTAGCAGCACCTCACAACCCTGAGCTGCACACTCCACTGCCCATCCTCTAGGACCGGAGCCTGAGAGTCTCAGGGGAACCATAAACCTGCCTCTCAAACTCACCCTGACCTATGTGTCCTGTGCCCTGATACAGTAGGTTGCTAGGGAGGTTACTAGTGGGCTGGACATCTGCCTGTCCTCTTGACTCTGCAGGTCACACTGTCAGTACTGTCAGTCACCCTCAAGCAGTGGTAGAGCGcaacatctctgtctctgcccatCAACAACTGGACTCACTCATATCTTTGGACGTGTGGGATGGTGTGCGTGCCCAAAGTGAGTTGTGTGACATTTGTACATTGTTCTACTATTGCCTATTGTATGTTGACCCTCTGAGTTTACTGTGTTGTGTAATACTCTGCAGGTGGCATATGCAATCTATACAGTCATTTGACATACATAAGCTTACAGAATAAAGCCGTAATATATCTGTGCATTCTTTCCCTGGTGTATTCATTTGGTATGTGTGTATTCATTATCTCAGTGGTTCTGTAATGGACAGAAACAATCATTCCACTACCATTCCCAATGTACATCCCATGTTCatcttcctcagtgtgtgtgtgtgtgtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051642.1 True 3103 mRNA 0.46 2 13613034 13644128

Neighbor

gene id symbol gene type direction distance location
rpl12 rpl12 coding upstream 6983 13603209 ~ 13606051 (+)
LOC118964768 NA coding upstream 7213 13605700 ~ 13605821 (+)
LOC118964766 NA coding upstream 7585 13605324 ~ 13605449 (+)
LOC118964767 NA coding upstream 8165 13604744 ~ 13604869 (+)
LOC118964769 NA coding upstream 8580 13604329 ~ 13604454 (+)
ccn1l1 LOC106570334 coding downstream 3357 13647485 ~ 13651835 (+)
lmo4a lmo41 coding downstream 24045 13668173 ~ 13685140 (+)
LOC110523240 fpgs coding downstream 162657 13806785 ~ 13818030 (+)
gpr107 LOC106570369 coding downstream 174199 13818327 ~ 13850807 (+)
ncs1a ncs1 coding downstream 216324 13860452 ~ 13882141 (+)
G369584 lrsam1 non-coding upstream 18387 13590579 ~ 13594647 (+)
fkbp15a fkbp15 non-coding upstream 30095 13557754 ~ 13582939 (+)
G369580 NA non-coding upstream 43524 13569180 ~ 13569510 (+)
G369551 NA non-coding upstream 92106 13520714 ~ 13520928 (+)
G369550 NA non-coding upstream 96108 13516723 ~ 13516926 (+)
G369619 NA non-coding downstream 15634 13659762 ~ 13660150 (+)
G369719 NA non-coding downstream 56276 13700404 ~ 13700664 (+)
G369720 NA non-coding downstream 58788 13702916 ~ 13703134 (+)
G369721 NA non-coding downstream 59043 13703171 ~ 13703492 (+)
G369722 NA non-coding downstream 59420 13703548 ~ 13703868 (+)
G368440 NA other upstream 503900 13108696 ~ 13109134 (+)
G367684 NA other upstream 1732999 11878329 ~ 11880035 (+)
G366973 NA other upstream 2184324 11425642 ~ 11428710 (+)
G366748 NA other upstream 2635882 10976682 ~ 10977152 (+)
G365197 NA other upstream 3763880 9848703 ~ 9849154 (+)
G369763 NA other downstream 121119 13765247 ~ 13769296 (+)
G370360 NA other downstream 611675 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 676976 14321104 ~ 14325895 (+)
G370414 NA other downstream 723544 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 1160533 14798616 ~ 14805526 (+)

Expression


Co-expression Network