ccn1l1 (LOC106570334)


Basic Information

Item Value
gene id ccn1l1
gene name LOC106570334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13647485 ~ 13651835 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976828.1
GGAGCCACTGTGAAAATCTCTTAATGAAGTTGCGAAGAGCCTGAGTTGAGCTGAGCTGTGCTGACTACTTCCACCTCCATAGAAACGGATCAAGTTGGACTTGAATTTTCTCCTTAGAAAACACCAAAACATACAGGCTCACCCACATCTCCTTCAGATAGATGAGAAGATACAAGGAGATATCATTTGAAAGCAGTGAACAGCTCCTATTCTTCACATTGGTTTGATCACTGCGTCTTTCGACACTGCTAGCCCTGAGAGTGACGAGTCTAGCTGACATATTGGGAAAACTTTGTATTCATTTTTTTCCCGAACCCATGAAAATCACGTTTTCTTTGTGGACAATGATGCGACAAGCAAGCATCTCCTCGGTGGTGTTTCTATCTTGCACTGTCATGCTGGTGCAGGGTGGATGCCCGCGGCAGTGCTCGTGCCCCACCTCACCGCCCTCATGCCCACCAGGTGTCAGCTGGGTGACAGACTCCTGCGGCTGCTGTAAGGTGTGTGCCAGGCAGTACAACCAGGACTGCAACCCTAGCCAGCCCTGTGACCACATCAAGGGCCTGCACTGCCACCTAGGGTCTGGAGGAGACCCGgcgacaggactgtgtcgagCTGAGGCCATGGGTCGTCCCTGTGAGCTGAACGGCCGGGTCTACCAACACGGGGAGGACTTCCAGCCCAGCTGCCAGCACCAGTGCAGCTGTATGGACGGCGTGGTGGGCTGCATGCCCCTGTGCCCACACCAGGTACCACTACCAGGTTGGCACTGCTCCCGGCCCCGGCTGGCCAGGCTGCCAGGACGCTGCTGCGAGGAGTGGCTTTGTGAcgatgacaaccatatcaaggaGGACTCCAGAGAGGTGGACCACGCTCCACCTCCTTCCCCACCCCAGCACCCTGATCTTGCCAGCAATGAGCTGCTCATGGCTCCCACCCCCTGGGACTCAAGTGCTGGAGCGTCATATCAAGAGTGGATCTCCTCCCCCCAGTCCCATGCCTTACTTCCCTCAACCTGCTTCCTGCAAACCACTGATTGGTCGCCTTGCTCAGCCACGTGTGGGATGGGTGTGTCCAGCCGAGTAACCAGTAGCAACGCTGAGTGTCGGTTGGCCAGAGAGACACGACTGTGCCAGATCCGACAGTGTGATCTTGCCCTCACCCCTTCTCCCAAGAAAGGGAAGAAGTGCCAACGCACAATACGTCCTCGCAAACCTGTCCGGATCAAGTTCACCGGCTGCTCTACAGCGCGCCAGTATCGTCCTCGTTCCTGTGGCTTGTGTGCCGACGGCAGCTGCTGCACTCCTTCTCTGACGCGCACGGTGAACCTTCACTTCCGCTGTCCCGGAGGCAGGCAGGACTTTACCCGTAGCGTCATGTGGATCCAGCGTTGCCGGTGCAGCCAGAGCTGCCAAAGTCAAGGGCTTGCCTCCCCGGGCTCTCTCAGTCTGCCTAACGACATCCATACCTTCTCCCACTGAGCCCCATGTCTAAACACTAGCATTTCTCGCCACAAGAACATGCCCTTGACCTGACTCTGGCCCTCACCTCTAGGGTTCACCCTTGCCCTAATCTCACTGTCTCCTTTCCTCATTCCAAAAACGTTTCCTGTTCCCTAACCCCAGGGTTTATTGCTGCCGTAGCCTCTTTACCCCAGTCTGTGTTCCTTTACCCCAGGACTCCCCCTGACCCTGTCTCCAGTCTGTGTTCCTTTACCCCAGGACTCCCCCTGACCCTGTCTCCAGTCTGTGTTCCTTTACCCCAGGACTCCTCCTGACCCTGTCTCCAGTCTGTGTTCCTTTACCCCAGGACTCCCTCTTGCCCTGTCTCCAGTCTGTGTTCCTTTACCCCAGAACTCCCCCTGCCCTGTCTCCAGTCTGTGTTCCTTTAccccagaacccccccccctgCCCTGTCTCCAGTCTGTGTTCCTTTACCCCAGGACCCCCCCTGACCCTGCCTCCAGTCTGCCCTCACCCCATACAGAAGGCTCCATCAGCTGGGGGAAGGACACTGATGCGATGTAGTGAACTGTTTTACTCTTACAGCTGCCTAATTGTGTACccaacactttctctctctcattctctcactggTGGTAACTCCCCCCATAATCCAACGGTTTTGGTTTGGTCTTCACTCACACCCGAAAATCAGCACCTCCATATAACTTCAgtgatggactgactgactgaatttaAAAGACAATTGGGGGTGCTTCTGTGTTACTGTAGTTTGGAATGGTGAATTGTACTCTGTGGGACTGTACTTATAACTACCCAATGAGAAAGGTTAGAATATCTGAATATCAGACAGGCAATCTCACAGAGACATTTGCGTAGCATCCCTTCTGACAAACGCCTTTATAGCCTTACTGCCCTTTTCACTTGTCTGTTTTGCTTGTGTTCAGTAAGTGACAGATCTGTGGGTGATTGTGTGCATTCTACAAATGACCTCTGTCAGTGGACCTCCTATCAAATTTGATGGGCAAGAATATAAATGCACCGGTGTTCATGGTTTACACTCTGAAATATGAAATATCATTGTTATAGACACAGAGGTTTTAAATGGACTTTTGTAAGTTATTCATGTTTAATTATTGTAGTGATGACTTGTAAATATGTATTTACTATACTTTGTACAGTTAGGCAATGTTGATTTGTTTGTCATTAGGTATATATGTCTGTTTCGTATTGTCTCTATCTGTACAGACTTCACTTAACGATGGAGTGACATGTTTTGGATATTACCTCCTTTTTCGAGGTGCACAGAATATAAACAATAGTGGACCGAGAATGTAATATGTTAATTTATATCACTTTATTTTGATTaatatattcaataaatgtcTTATAATGAAAGTGcctcttgtaaaaaaaaattgcaaacGCCATGAAAATATATGTATTTCTACAAAAACAAA

Function

NR:

description
protein CYR61-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976828.1 True 2923 mRNA 0.50 5 13647485 13651835

Neighbor

gene id symbol gene type direction distance location
LOC118964562 NA coding upstream 3357 13613034 ~ 13644128 (+)
rpl12 rpl12 coding upstream 41434 13603209 ~ 13606051 (+)
LOC118964768 NA coding upstream 41664 13605700 ~ 13605821 (+)
LOC118964766 NA coding upstream 42036 13605324 ~ 13605449 (+)
LOC118964767 NA coding upstream 42616 13604744 ~ 13604869 (+)
lmo4a lmo41 coding downstream 16338 13668173 ~ 13685140 (+)
LOC110523240 fpgs coding downstream 154950 13806785 ~ 13818030 (+)
gpr107 LOC106570369 coding downstream 166492 13818327 ~ 13850807 (+)
ncs1a ncs1 coding downstream 208617 13860452 ~ 13882141 (+)
arpc5l arpc5l coding downstream 334860 13986695 ~ 13990227 (+)
G369584 lrsam1 non-coding upstream 52838 13590579 ~ 13594647 (+)
fkbp15a fkbp15 non-coding upstream 64546 13557754 ~ 13582939 (+)
G369580 NA non-coding upstream 77975 13569180 ~ 13569510 (+)
G369551 NA non-coding upstream 126557 13520714 ~ 13520928 (+)
G369550 NA non-coding upstream 130559 13516723 ~ 13516926 (+)
G369619 NA non-coding downstream 7927 13659762 ~ 13660150 (+)
G369719 NA non-coding downstream 48569 13700404 ~ 13700664 (+)
G369720 NA non-coding downstream 51081 13702916 ~ 13703134 (+)
G369721 NA non-coding downstream 51336 13703171 ~ 13703492 (+)
G369722 NA non-coding downstream 51713 13703548 ~ 13703868 (+)
G368440 NA other upstream 538351 13108696 ~ 13109134 (+)
G367684 NA other upstream 1767450 11878329 ~ 11880035 (+)
G366973 NA other upstream 2218775 11425642 ~ 11428710 (+)
G366748 NA other upstream 2670333 10976682 ~ 10977152 (+)
G365197 NA other upstream 3798331 9848703 ~ 9849154 (+)
G369763 NA other downstream 113412 13765247 ~ 13769296 (+)
G370360 NA other downstream 603968 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 669269 14321104 ~ 14325895 (+)
G370414 NA other downstream 715837 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 1152826 14798616 ~ 14805526 (+)

Expression


Co-expression Network