lmo4a (lmo41)


Basic Information

Item Value
gene id lmo4a
gene name lmo41
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13668173 ~ 13685140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601755.2
GTATTCCCTCTTGGCTTTGAACTGGAGTAGCCGCCTTTCCTCTCACAAATAGTAGCGTTGTATGTCCATGAACAAGAACTAAGAACCAAATTCCTTTAGCCGAGCTGTGACTATCTGATATGAGAGAATTACTTCATCACCAAGTTTACTGTTTCAGATGTCTATAGGAAATCAATGAAGTCGACCAACGCAGTATAAAATAAGGAAACAAGAAGAGGAAGATTTAGCCTAGACTACTTCTGGACTAGTTTGCAAGCTCTCCAATCGGAATATATAACAACCGTTTGAAGTTGTTACATCTTGAGAACGGCAACAATTTACCATTGCAAGCCGCAGTCCACGACTTGGTTGAAGTTGCGCACGTCTCGTGGTAGCGCGCACCACCATCGTGATCATTTCCTCGCGGTTACTTCACCTAAACTACCACGACGGCAAGGCCAACCATGGTGAACAGCCGGGTGGAGGCATCAGCCGTGGCGGTGACAGGGGGCGGCGGTGGCTCGGCAGGCAGGTCATGCGCGGGCTGTGGTGGGCGCATCGCCGACCGCTTCCTGCTCTTCTCCATGGAGCGCTACTGGCACACGCGCTGCCTCAAGTGCTCCTGCTGCCACGCCCAGCTGGGCGAGATTGGcaccacctgctacagcaaaggGGGCATGATCCTCTGCAAGAACGACTACATCAGGCTGTTCGGGCACAGCGGGGCATGCAGCGCTTGTGGCCAGTCCATCCCTGCCAGTGAGATGGTGATGCGGGCACAGGGCAATGTGTACCACCTCAAGTGTTTCACCTGTGCCACCTGTAGAAACCGGCTGGTGCCGGGCGACCGCTTCCACTATGTCAATGGCACCATCTTCTGTGAGCACGACCGGCCAGGGGGCGCCCTGCTCAGCAGTCACCTGACCTCGCTGCAGGGGAACGGCATGATGCCCGACCAGAAGGTCTGCTGAAGAAGAATGGGTGACAAAGCAACGTGTGCCTTCTCCTcccccgcctcctcctcctcctgctcttcttCCTTTTCCACCCATAAGTTTGTCCTGCaccatccatcccatccttcaGATATTCCGATATCCGTACTCCAGATACTGCTGCCAGTGTCCCATTAGCTTTCCCAGTAACACGGCATTTCCCCCAAAATAATGTTTATTCTGGTCATAGAGAATAATGTTCTCAACCTTGACATAATTGAAGTCTCCTGCTTCAAGGGAAAGATGTGGAGGAGGGAAAGACTGTTGATGATGGAAGAGGATGATTTATACTGTCAAACCAGTGTCTGTTTTCGGTAAGTCCATTGGTGACTGACTTGCATAAGACTGACTTGTAATGCCCTGAGAGGACTATGGCATTTCCAGTGATGGACCATCCTTGATGTAGCACCTTTCCCTAGCCAGCACAAAActacagggagagggagatgccACAGACCAATAAATATAAACTGGTTCTCGTCCGGAGCTGTTTCAACCAAGCTACAGTTTAATGACTCCCGAAACACGAAGAGTGTGTTCAAAACAAGATCGCCACatgaatacacagacacacactctctgaGCTCAGACTCTAGGCCCTTTCATGTGTCGGATTGAGGGAAACAGGAAATACTTTGGTTGTAGTGCTATGCGACCGTAGCTTTTGCCCCCTTGACGTTCCTGAACTCTCATTCCTGAACTCTCATTGGCTCACTCGAACTGTCGAGTTAGGCCGAACGAGGAATGATCAAATACACCTGCCTGGATGTCTCGTCTACTTTCAAAAATATACTCTCTGTGTACTAAATGAAGAATGCCTGTAGAATATTCATCAAAACATACCTTTTAGTCCCATGATTATTTTGTACTGCGAGTGGTTGCCTTGTGTTTCTCGATTGTCTTCGATATTTAGTTATGTTTTCAGGTGAAGATGGTTCCTGGGGTTAGTAAATGTACTCCTGTTTATGGGAACATACAAATATGCATTTGTAATTGTTGTTTAAAAAATTTGGCCGGTGAGAATTGTTATTCCAACATGACTTTGCAGCAGTGCTCTATACGTCTTAATGTATTGTTGTTATGTGGTGGTGGAAGAGGACAAGGTCAAAGTTGAACTGGTCCACATATAACCAGGGTCGTGTTGAGTAGGGCTCACTGTAGATAGAAAGCAGAAATAAGTGTTTGTTATTGGAGAGGCCATGTAGTCCCTCGCTGTTTCAGGCCTTTTTTTTCCGTTTGGtacctaatgaacacgacccaggttgAGGGAAGAGGAGAGCGGCATTGGGATGGAGAGATGTAATAACTGTACATACCTTTTCTAGTGCTATTATTGTATTGTGGTCTATGGTTGAATTGCGTCTTTGTGTGGCCTAAAACATCTATATGGAGAAAAAAAGTACTTTCTAAATAActataataatcataatattgCCAGTCACCTGTGTCGTGTCTGTAATGAGTGTTTGGATAATATTTACCTGCCgtttgtgtgcgcgtgtgtagcGAGGTGTGACAAATAGCGCTTTCACACCGAAAGGTAAAGCTCCCGGACTCAGACAAACATGGCCGATTACCCTCAGGAATGGAATTTCAAAGGCTTGAGCTGGGGCCATTACAGAAGCAATTAAAGTGGGATACGCTGGAGGCCAAGGCTTTAGCTGAAGTCCTGTGCCGGAGTCTAATGAGGCCTAATCTGGTGAGCTGGCCTAATTAAAAGGGAGGGACCCCTTTCCTGTGGGTGCTGAGTAGAGCAGTCCAGCTGTTGACTTTACAGTGCTCACAATGCAACAACAAACTGAAATAAATAAGCCAACCCTTTTTCTCTTACCTATAACTCCATATAACTTTTCTTTTTTTCACTGCGTATGAATTTGACATTTTCACTTCTTTGTTGAGTTCTTTACTTGGAAGTTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTACATATAGTAGGGTATAGGGCCTCTAcatgaaacccccccccccagatctTGTTTATTTAATTAGCTAATTAAACTTCCATCTTATAGGTAGGTACCTTTGGCCTAGAAATCACAGTCAGCTTTTATGATcttcttttatttcttattccgTGACTTTTCTACAGAGAGAAATTAAAACCAAACATGCAATAGGCCTACAAAGAAGACAGAAAAAAAACACTGAAGTAGCCAGCTGTGACTTTTCAAATGAATGTTCCCAGAGAAAACTCTACCATAAGCATTGTGGTGTGTGTCGGTGCCTCAGCAGTTCCTCTTTTAGGGTTAGCCAATTAGGTTCACACTCAAAATAACAATGAGTGTTTTAATGGCCGGATTTCAAAGCATTTCTTTGGTAATGATGTAGAATGGTTTTAAAGGATGAACACATTCCTCGGGTTCTTCAAACATAATCCAAACCTGAGCATGAGTTTcaaatcttaaaaaaaaaaaacgtttttgtcAAGGTATTTTGGGCATTCCTCAGTTTGTTTCTAATTAGACTCCCATACTTCCATAGACACAAGTGGGGTTCAATCATAATAACCAGAATAAACCTGATCTGAAAGAACTACGTAAGAGAAAGCAATATACCCAATATATATAAGAACACCTACAGAAGCACCTATCTGACATATTGTAGAACCTGTTATCGCATTGGAGGTACCTATCCAGTCATTTTAGATCAGTGTGGATGTTTTAAAATCAGTTCATTTTTAAAACGTAGGAGTATTGCATACTGATAACAGCCACACAATCCGTCTCTATACCTGTTCTAACCAATGTGGCACCCAATGTTTCATTTGTATACCTAGTCTAATGACCATTTGATCCAGTAGCTTGATCAAAATACATGGACAACTTATCAGAACATTTCTCTTAACTGTTCAGTTTAGGTTTAAAGACACTGAAAATGATCAAGAAACTGAAGCAATTGTATTATCGGTATCTTATTCACAGGGGATTCCATAAATAAACACTTTTTGCTGA

Function

NR:

description
LIM domain transcription factor LMO4.1

GO:

id name namespace
GO:0031076 embryonic camera-type eye development biological_process
GO:0030900 forebrain development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24099 LMO4; LIM domain transcription factor LMO4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601755.2 True 4108 mRNA 0.44 5 13668173 13685140

Neighbor

gene id symbol gene type direction distance location
ccn1l1 LOC106570334 coding upstream 16338 13647485 ~ 13651835 (+)
LOC118964562 NA coding upstream 24045 13613034 ~ 13644128 (+)
LOC118964768 NA coding upstream 62352 13605700 ~ 13605821 (+)
LOC118964766 NA coding upstream 62724 13605324 ~ 13605449 (+)
LOC118964767 NA coding upstream 63304 13604744 ~ 13604869 (+)
LOC110523240 fpgs coding downstream 121645 13806785 ~ 13818030 (+)
gpr107 LOC106570369 coding downstream 133187 13818327 ~ 13850807 (+)
ncs1a ncs1 coding downstream 175312 13860452 ~ 13882141 (+)
arpc5l arpc5l coding downstream 301555 13986695 ~ 13990227 (+)
LOC110523252 LOC106570453 coding downstream 443419 14128559 ~ 14142466 (+)
G369619 NA non-coding upstream 8023 13659762 ~ 13660150 (+)
G369584 lrsam1 non-coding upstream 73526 13590579 ~ 13594647 (+)
fkbp15a fkbp15 non-coding upstream 85234 13557754 ~ 13582939 (+)
G369580 NA non-coding upstream 98663 13569180 ~ 13569510 (+)
G369551 NA non-coding upstream 147245 13520714 ~ 13520928 (+)
G369719 NA non-coding downstream 15264 13700404 ~ 13700664 (+)
G369720 NA non-coding downstream 17776 13702916 ~ 13703134 (+)
G369721 NA non-coding downstream 18031 13703171 ~ 13703492 (+)
G369722 NA non-coding downstream 18408 13703548 ~ 13703868 (+)
G369730 NA non-coding downstream 27999 13713139 ~ 13713423 (+)
G368440 NA other upstream 559039 13108696 ~ 13109134 (+)
G367684 NA other upstream 1788138 11878329 ~ 11880035 (+)
G366973 NA other upstream 2239463 11425642 ~ 11428710 (+)
G366748 NA other upstream 2691021 10976682 ~ 10977152 (+)
G365197 NA other upstream 3819019 9848703 ~ 9849154 (+)
G369763 NA other downstream 80107 13765247 ~ 13769296 (+)
G370360 NA other downstream 570663 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 635964 14321104 ~ 14325895 (+)
G370414 NA other downstream 682532 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 1119521 14798616 ~ 14805526 (+)

Expression


Co-expression Network