zgc:55461 (tubb4b)


Basic Information

Item Value
gene id zgc:55461
gene name tubb4b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13766485 ~ 13770596 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601756.2
CGATTTTGAATCGCGTATACTTCTTTCTTGTTTCAGAGTGTATCCGACAGCGGCAGTTATACTTcacctgtttaaaaaaataaaataataattcacTCAAAATGAGGGAAATTGTGCATTTGCAGGCTGGCCAGTGCGGCAACCAAATTGGAGCAAAGTTCTGGGAAGTGATTAGTGACGAACATGGCATCGACCCCACTGGCACATACCATGGGGACAGTGACCTTCAGCTGGAGAGAATTAATGTGTATTACAATGAAGCCACGGGAGGCAAGTATGTCCCCCGTGCGGTGTTAGTGGACTTGGAGCCTGGTACAATGGACTCTGTGAGGTCGGGTCCCTTTGGACAGATCTTCCGACCAGACAACTTCGTCTTCGGCCAAAGTGGAGCTGGAAACAACTGGGCCAAGGGCCACTACACAGAGGGAGCAGAGCTGGTGGACTCTGTTTTGGATGTGGTGAGGAAAGAGGCAGAGAGCTGTGACTGTCTACAGGGTTTCCAGCTCACCCACTCCCTGGGCGGGGGCACAGGCTCGGGCATGGGCACCCTGCTCATCAGCAAAATCCGTGAGGAGTACCCCGATCGTATCATGAACACGTTCAGTGTAGTGCCCTCGCCCAAAgtatcagacactgtggtggagCCCTACAATGCCACCCTGTCAGTCCACCAGCTAGTAGAGAACACCGACGAGACCTACTGTATTGACAACGAGGCTCTGTATGACATCTGCTTCCGTACCCTTAAACTTACCACGCCCACCTATGGCGACCTCAACCACCTGGTGTCAGCCACCATGAGCGGGGTCACCACTTGCTTGCGCTTCCCTGGCCAGCTCAACGCTGACCTCCGTAAACTGGCTGTCAACATGGTGCCCTTCCCCcgtctccacttcttcatgccGGGCTTCGCCCCCCTGACCAGCAGGGGGAGCCAGCAGTACAGGGCCCTCACTGTGCCTGAGCTCACCCAGCAGATGTTTGATGCCAAGAACATGATGGCAGCTTGCGACCCACGTCACGGCCGTTACCTCACCGTAGCTGCAGTGTTCAGGGGCCGCATGTCCATGAAGGAGGTGGATGAGCAGATGCTGAACGTCCAGAACAAGAACAGCAGCTACTTTGTCGAATGGATCCCCAACAACGTCAAGACCGCTGTCTGCGACATTCCTCCCCGCGGCCTCAAGATGGCCGCCACCTTCATCGGCAACAGCACGGCCATCCAGGAGCTGTTTAAGCGCATCTCCGAGCAGTTCACCGCCATGTTCCGTCGTAAGGCCTTCCTCCATTGGTACACCGGGGAGGGTATGGACGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAACGACCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACCGCCGAGGAGGAGGGAGAGtttgaggaggaaggagaggaggagctggcGTAAAGATGTGTCATGTGTACTTACTTCACATGCCTTACTGACATTTTTCAGTGTCCTGTTTGTCTTGTCTGTCCCTTTTCACTGTGGCCTTCTCAAGCTGTTAAATTCCAACTTTTGAACCAAATCTCTATTAAAGGCATAACTTTGATAGCA

Function

symbol description
tubb4b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb).

NR:

description
PREDICTED: tubulin beta-4B chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601756.2 True 1589 mRNA 0.53 4 13766485 13770596

Neighbor

gene id symbol gene type direction distance location
pole3 pole3 coding downstream 153652 13608582 ~ 13612833 (-)
lrsam1 lrsam1 coding downstream 165465 13580344 ~ 13601020 (-)
ndor1 ndor1 coding downstream 208312 13544228 ~ 13558173 (-)
ier5l LOC106570852 coding downstream 646189 13117989 ~ 13120296 (-)
crata LOC106570862 coding downstream 679276 13058887 ~ 13087209 (-)
glipr2 LOC106570345 coding upstream 11501 13782097 ~ 13797656 (-)
si:dkey-220k22.1 LOC106570374 coding upstream 122340 13892936 ~ 13973261 (-)
LOC110523244 LOC106570388 coding upstream 202702 13973298 ~ 13982903 (-)
scai LOC106570398 coding upstream 220701 13991297 ~ 14030388 (-)
LOC118964563 NA coding upstream 233709 14004305 ~ 14005852 (-)
G370072 NA non-coding downstream 30882 13735211 ~ 13735603 (-)
G370057 NA non-coding downstream 51216 13715026 ~ 13715269 (-)
G370056 NA non-coding downstream 53380 13712863 ~ 13713105 (-)
G370042 NA non-coding downstream 67056 13699178 ~ 13699429 (-)
G370036 NA non-coding downstream 76527 13689532 ~ 13689958 (-)
G370141 NA non-coding upstream 114621 13885217 ~ 13886506 (-)
G370250 NA non-coding upstream 265627 14036223 ~ 14036462 (-)
G370251 NA non-coding upstream 265929 14036525 ~ 14036808 (-)
G370278 NA non-coding upstream 319397 14089993 ~ 14090353 (-)
G368921 NA other downstream 1060393 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 1629695 12134052 ~ 12136790 (-)
G365752 NA other downstream 4576387 9189669 ~ 9190098 (-)
G364754 NA other downstream 4715777 9047542 ~ 9099000 (-)
G364322 NA other downstream 5462302 8303267 ~ 8304183 (-)
G370333 NA other upstream 436594 14207190 ~ 14208705 (-)
G370635 NA other upstream 656742 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 1222532 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 1352879 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1925496 15693396 ~ 15707607 (-)

Expression


Co-expression Network