arpc5l (arpc5l)



Basic Information


Item Value
gene id arpc5l
gene name arpc5l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13986695 ~ 13990227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>NM_001165172.1
GGAAGTGACAGTTTATGCTGCTGGCTTCACGTAGGTGAAAATGATTCTGACAACAACACTATCGCGTGTCAAACTAGTTAGCTAGATATTTGGTTGAAAAGTAATGATTGTGTAACACTGGCAGATAAATTACAATCAAAACACCGTTAAATTGTCACATCTGCGTAGACTGTGGTTGCTAGCAATAGCACCGACAGGGCAAGTACACTGTACTACGCTCGCATCAACTCAACAACAGCGCCGTGGAGGACTAGCTCGCTGGCTTGCTAGCTACTGTTTCCTCCAGCGAAGTGGCTCCGATGGCGAAAAACACTCTTTCGTCGCGATTCAGGAAACTCGACATAGATGAATTTGATGAGAACAAATTCGTGGATGATCACGATGAGGCTGTCGACAATCAAGGACCCGACGGCGCGGAGATAGACAACCTCATCAGGCAAGGCGacatgatgacagcttttcacattGCTCTCCGGAACCCTCCTGTCAACACTAAGAATCCAGCAATAAAGGAAAGGGCTCTGGCAATAGTGCTGAGAGTGTTGACGTCATTCAAGTCCAGTGATATCGAGCCAGCTGTCAAGTCGCTAGACAGAAGCGGGGTGGACCTGCTTATGAAGTACATATATAGAGGCTTTGAGAAGCCCTCTGACAATAGCAGTGCCATTCTCCTACAGTGGCACGAAAAGGCTTTCGCAGTTGGGGGCTTAGGGTCAATCGTAAGAGTTCTGACCGCCCGAAAGACAGTTTGAGGGGACGTGCTTTATCACATGGAGCATCTCCTGCATGACCACTGACAAGAGGATTGACTGCCTTCTGTATAAGGGAAAGTAGCTTATTACCACAATACATTTCTTCCTGAGAATAAAAACCCTTACACTACATAAgttaaagacaaaaaaaaacaaagggAACATTATTTTCTGTTAGAAAATATTTAGCTGTAACTAAGGAAATTGATATTTGTTCATGTATAGGATTATCATTTTTACCTAATCACGAGTTTGTCGTTCTTTCGCCATTGCATTTCTTTCTAATATTCATAAGTATCAGCATGTTTCTTTGAGGGTGGGGGAAGGAAAAGAGTTTCCCTAATGACATGAACATGGCAGGTAAAAGGCTGTGCATCAACTGTTACTTGGTACCAACGGTACCtttatacctgtgtgtgtgtgtgtgtgtgtgttgtgtgagctTGCGAGTATGTCCTTTGGCTCACAGTGTTGAATATTTAGATTTACGTTATTCTCATTGTCAGTTTTGTACAGACAAAAGTACATTTAATATAAAGAGACAGATTCTTTGAATTCAATTAATTGGTGGGTGGGGGATTTCATTGTAAAGTGCCTGCTGCAATAAAACTCATGGATCATCTTAACTGGG

Function


symbol description
arpc5l Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion.

NR:

description
actin-related protein 2/3 complex subunit 5-like protein

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

RNA


RNA id representative length rna type GC content exon number start site end site
NM_001165172.1 True 1383 mRNA 0.43 4 13986695 13990227

Neighbor


gene id symbol gene type direction distance location
ncs1a ncs1 coding upstream 104554 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 135888 13818327 ~ 13850807 (+)
LOC110523240 fpgs coding upstream 168665 13806785 ~ 13818030 (+)
lmo4a lmo41 coding upstream 301555 13668173 ~ 13685140 (+)
ccn1l1 LOC106570334 coding upstream 334860 13647485 ~ 13651835 (+)
LOC110523252 LOC106570453 coding downstream 138332 14128559 ~ 14142466 (+)
LOC110523253 LOC106570436 coding downstream 158205 14148432 ~ 14231585 (+)
mmp11b LOC106570480 coding downstream 282078 14272305 ~ 14308719 (+)
LOC110523258 LOC106570496 coding downstream 355406 14345633 ~ 14347412 (+)
LOC110523259 odf2 coding downstream 361226 14351453 ~ 14367540 (+)
G369892 NA non-coding upstream 2071 13984376 ~ 13984624 (+)
G369819 NA non-coding upstream 94410 13886803 ~ 13892285 (+)
G369820 NA non-coding upstream 100193 13884276 ~ 13886502 (+)
G369805 NA non-coding upstream 129834 13856564 ~ 13856861 (+)
G369785 NA non-coding upstream 132526 13800355 ~ 13854169 (+)
G369878 NA non-coding downstream 1121 13991348 ~ 13995454 (+)
G369936 NA non-coding downstream 37446 14027673 ~ 14034826 (+)
G369942 NA non-coding downstream 45531 14035758 ~ 14035999 (+)
G369943 NA non-coding downstream 47631 14037858 ~ 14038094 (+)
G369921 LOC100380848 non-coding downstream 49300 14039527 ~ 14040898 (+)
G369763 NA other upstream 217399 13765247 ~ 13769296 (+)
G368440 NA other upstream 877561 13108696 ~ 13109134 (+)
G367684 NA other upstream 2106660 11878329 ~ 11880035 (+)
G366973 NA other upstream 2557985 11425642 ~ 11428710 (+)
G366748 NA other upstream 3009543 10976682 ~ 10977152 (+)
G370360 NA other downstream 265576 14255803 ~ 14259133 (+)
G370382 smarcb1 other downstream 330877 14321104 ~ 14325895 (+)
G370414 NA other downstream 377445 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 814434 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 1057951 15047739 ~ 15054353 (+)

Expression



Co-expression Network