LOC110523246 (ppp6c)


Basic Information

Item Value
gene id LOC110523246
gene name ppp6c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14039378 ~ 14052301 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601773.2
TTAAATCTCTATGTGACTGTTTTTGGAAATTGTATTTCTTGGCCGGGCGTCAATTAAACCGCAGTACCGAAGCAAAACTGTAGGAGCAGTCGAAACCGTCCTTTAGACCGGAACCCTGGCCCATTGCTCGAGATGCGCATATACTTCCTATTTTTCTGAagttcttgtttttaaaatggcgCCGTTAGACTTGGATAAGTATGTTGAGATTGCAAGACAGTGCAAATATTTACCAGAAAACGACTTAAAGAGATTATGTGATTATGTATGTGATTTGCTACTCGAGGAATCAAATGTTCAACCAGTATCCACTCCAGTCACTGTTTGTGGAGACATTCATGGCCAGTTTTATGACCTATGTGAACTCTTCAGAACTGGCGGACAAGTTCCAGACACAAACTACATTTTTATGGGAGACTTTGTGGACAGGGGATACTACAGCTTGGAGACATTCACGTACCTGCTAGCCTTAAAAGCCAAGTGGCCGGACCGCATCACGCTTCTACGAGGAAATCACGAAAGCAGGCAGATAACACAGGTGTACGGCTTTTACGATGAGTGCCAAACTAAATATGGGAATGCAAATGCGTGGCGATACTGCACTAAAGTGTTTGACATGCTAACAGTAGCGGCTTTGATAGACGAGCAGGTCCTTTGTGTGCATGGTGGTCTTTCACCTGACATCAAGACCCTGGACCAGATCCGAACAATCGAGCGCAACCAAGAGATTCCCCACAAGGGGGCCTTCTGTGACCTGGTGTGGTCGGACCCAGAGGATGTGGACACCTGGGCCATCAGTCCGCGAGGTGCAGGCTGGCTGTTTGGCGCCAAGGTCACTAATGAGTTTGTTCACATCAATAATCTGAAGCTGATTTGCCGTGCACACCAGCTGGTCCACGAGGGCTACAAGTTCATGTTTGACGAGAAGCTGGTGACGGTGTGGTCCGCGCCCAACTACTGTTACCGCTGTGGAAACATTGCCTCCATCATGGTCTTCAAAGACGTGAACACCCGGGAGCCCAAGCTGTTCCGCGCCGTGCCCGACTCGGAGCGGGTCATCcctcccagaacaacaacacctTATTTCCTCTAATCACAGGAGCCATTTTGTTCACTCCAAAAATAGCCTGTTGCCTCTTTCCCTCACCCATTTCCCGTTTGCAGTCTTAAGGAAGTGGATAGGTGTAACTAAGAAATGACAATACAATGGCTTCACCTTGGTCTGGTCCAGAACTAATCATAGCTCTTACCTCTTCAGTGTTTACAGATCTGAAGGAATGAGATGTGTATAAGCAACATGATGTAAGCTCCCCTAAGCCTCATTGAAAGGTTGAGCTGTCACTAGTTTGTTTACATCCGTCTCATCCCTTTAGATCTGCAAAAACCTAAGTGATTGATGCTTCTGGACTGAATCTTGTAATACGTTTAGGGGATCTATCTATATTTCTTAAACCCATCTGGTTTGTTGTCATCTGCAAAGGGTTAGTGGTTTTGGGACTGGGCTATTGTCCCCACTGTCAACAACCCCCTCCCACCCCCCAAGCTTCTCCCAACGGGACTTGCATTTCTCGATCTGTTATTGAACATTTTCTTTCTTGAAATATCCCACCTCAGTCCTGCCTCATTCCCTTGATAGTATTTGATGTTGCCAAATGCATATTTGTTTTTGTAGATTAACATTGTTGCATTGGATGAATTGACTCAATAGTACTGTTGGCCCTTCATTTCAATTGAAGCCCTATCTTTATACTTCACCCCAATACTCCTGATTTTAATTTCTACTCCCTCAAATTCTATTTGATGTGAGTAAATGGGACACGCTGTTCCTATTAAATGTAATTGTAGCCAACAGTGTATTTGTATGAATATGTTTTTGCAGCATTGTGCACATTCAACGGTCATTCATCTACTCTGCTTCTTTATAAGGATATTATCATAGGCTGTCACGGAATGAATTCCTTGAATTGCACTGTGTCTCAGAATTCCATGTTAACTATTGAATGGAATTCAGTGATGTGAGTTTTATCGTTCCAACTGGGTCGATATTGCAATTACGCTAAAGGCATGTCAGACCTGATACTATGAACTCTCAGCTGTAATCTATAGAAGAAAACAGTTTTCTCCTCATGCCGTAATTTCTTCACAGATATTATTTCCACAGAAGACAGCAACTTAAGTATGCTGCTGCTGTTTTTTAAACCAGATCAGGGTGATTGGGGAGGGGATAAGTCTTGGGGACTGAGTGGGCGATTAGGCTTTTGTACATTGAAATAATTGTATTGATTATTTCTCCTATTTTTTTTCTGATTTGTTGTATTTTATTATTGTAGACCGCAATCAACCTACCAATTGAAAATAAAAAGCCTTTAACTTAA
>XM_036976839.1
AAGTCATCCAAAAACATTGCAGACATtggataaaaataaaatgttagcaTCTTCGGTTGTGAGTGATGGAAACAAGTCGCCCTCAGCGACAATTATTTGAATTATTCAATGGATGATTTGTGCACACAGAGATTATGTGATTATGTATGTGATTTGCTACTCGAGGAATCAAATGTTCAACCAGTATCCACTCCAGTCACTGTTTGTGGAGACATTCATGGCCAGTTTTATGACCTATGTGAACTCTTCAGAACTGGCGGACAAGTTCCAGACACAAACTACATTTTTATGGGAGACTTTGTGGACAGGGGATACTACAGCTTGGAGACATTCACGTACCTGCTAGCCTTAAAAGCCAAGTGGCCGGACCGCATCACGCTTCTACGAGGAAATCACGAAAGCAGGCAGATAACACAGGTGTACGGCTTTTACGATGAGTGCCAAACTAAATATGGGAATGCAAATGCGTGGCGATACTGCACTAAAGTGTTTGACATGCTAACAGTAGCGGCTTTGATAGACGAGCAGGTCCTTTGTGTGCATGGTGGTCTTTCACCTGACATCAAGACCCTGGACCAGATCCGAACAATCGAGCGCAACCAAGAGATTCCCCACAAGGGGGCCTTCTGTGACCTGGTGTGGTCGGACCCAGAGGATGTGGACACCTGGGCCATCAGTCCGCGAGGTGCAGGCTGGCTGTTTGGCGCCAAGGTCACTAATGAGTTTGTTCACATCAATAATCTGAAGCTGATTTGCCGTGCACACCAGCTGGTCCACGAGGGCTACAAGTTCATGTTTGACGAGAAGCTGGTGACGGTGTGGTCCGCGCCCAACTACTGTTACCGCTGTGGAAACATTGCCTCCATCATGGTCTTCAAAGACGTGAACACCCGGGAGCCCAAGCTGTTCCGCGCCGTGCCCGACTCGGAGCGGGTCATCcctcccagaacaacaacacctTATTTCCTCTAATCACAGGAGCCATTTTGTTCACTCCAAAAATAGCCTGTTGCCTCTTTCCCTCACCCATTTCCCGTTTGCAGTCTTAAGGAAGTGGATAGGTGTAACTAAGAAATGACAATACAATGGCTTCACCTTGGTCTGGTCCAGAACTAATCATAGCTCTTACCTCTTCAGTGTTTACAGATCTGAAGGAATGAGATGTGTATAAGCAACATGATGTAAGCTCCCCTAAGCCTCATTGAAAGGTTGAGCTGTCACTAGTTTGTTTACATCCGTCTCATCCCTTTAGATCTGCAAAAACCTAAGTGATTGATGCTTCTGGACTGAATCTTGTAATACGTTTAGGGGATCTATCTATATTTCTTAAACCCATCTGGTTTGTTGTCATCTGCAAAGGGTTAGTGGTTTTGGGACTGGGCTATTGTCCCCACTGTCAACAACCCCCTCCCACCCCCCAAGCTTCTCCCAACGGGACTTGCATTTCTCGATCTGTTATTGAACATTTTCTTTCTTGAAATATCCCACCTCAGTCCTGCCTCATTCCCTTGATAGTATTTGATGTTGCCAAATGCATATTTGTTTTTGTAGATTAACATTGTTGCATTGGATGAATTGACTCAATAGTACTGTTGGCCCTTCATTTCAATTGAAGCCCTATCTTTATACTTCACCCCAATACTCCTGATTTTAATTTCTACTCCCTCAAATTCTATTTGATGTGAGTAAATGGGACACGCTGTTCCTATTAAATGTAATTGTAGCCAACAGTGTATTTGTATGAATATGTTTTTGCAGCATTGTGCACATTCAACGGTCATTCATCTACTCTGCTTCTTTATAAGGATATTATCATAGGCTGTCACGGAATGAATTCCTTGAATTGCACTGTGTCTCAGAATTCCATGTTAACTATTGAATGGAATTCAGTGATGTGAGTTTTATCGTTCCAACTGGGTCGATATTGCAATTACGCTAAAGGCATGTCAGACCTGATACTATGAACTCTCAGCTGTAATCTATAGAAGAAAACAGTTTTCTCCTCATGCCGTAATTTCTTCACAGATATTATTTCCACAGAAGACAGCAACTTAAGTATGCTGCTGCTGTTTTTTAAACCAGATCAGGGTGATTGGGGAGGGGATAAGTCTTGGGGACTGAGTGGGCGATTAGGCTTTTGTACATTGAAATAATTGTATTGATTATTTCTCCTATTTTTTTTCTGATTTGTTGTATTTTATTATTGTAGACCGCAATCAACCTACCAATTGAAAATAAAAAGCCTTTAACTTAA
>XM_021601774.2
actcgtaacaagTTAAGCATTGCAAAACgtatattcgatcaaataaacctcaAGTAGCATGTAAGATATACAAAAAAATGTGTTGACCAAATTCAACACTCTCCTTGAATCCTTACTTGGTGGACGAAACAACAAAAGCGCCACTTGCTGGTGGGAGACCTGTTTATACAGACAAACATCACATGCGCACTAGCACAGTGCACAGGGAGCATGAGATTATGTGATTATGTATGTGATTTGCTACTCGAGGAATCAAATGTTCAACCAGTATCCACTCCAGTCACTGTTTGTGGAGACATTCATGGCCAGTTTTATGACCTATGTGAACTCTTCAGAACTGGCGGACAAGTTCCAGACACAAACTACATTTTTATGGGAGACTTTGTGGACAGGGGATACTACAGCTTGGAGACATTCACGTACCTGCTAGCCTTAAAAGCCAAGTGGCCGGACCGCATCACGCTTCTACGAGGAAATCACGAAAGCAGGCAGATAACACAGGTGTACGGCTTTTACGATGAGTGCCAAACTAAATATGGGAATGCAAATGCGTGGCGATACTGCACTAAAGTGTTTGACATGCTAACAGTAGCGGCTTTGATAGACGAGCAGGTCCTTTGTGTGCATGGTGGTCTTTCACCTGACATCAAGACCCTGGACCAGATCCGAACAATCGAGCGCAACCAAGAGATTCCCCACAAGGGGGCCTTCTGTGACCTGGTGTGGTCGGACCCAGAGGATGTGGACACCTGGGCCATCAGTCCGCGAGGTGCAGGCTGGCTGTTTGGCGCCAAGGTCACTAATGAGTTTGTTCACATCAATAATCTGAAGCTGATTTGCCGTGCACACCAGCTGGTCCACGAGGGCTACAAGTTCATGTTTGACGAGAAGCTGGTGACGGTGTGGTCCGCGCCCAACTACTGTTACCGCTGTGGAAACATTGCCTCCATCATGGTCTTCAAAGACGTGAACACCCGGGAGCCCAAGCTGTTCCGCGCCGTGCCCGACTCGGAGCGGGTCATCcctcccagaacaacaacacctTATTTCCTCTAATCACAGGAGCCATTTTGTTCACTCCAAAAATAGCCTGTTGCCTCTTTCCCTCACCCATTTCCCGTTTGCAGTCTTAAGGAAGTGGATAGGTGTAACTAAGAAATGACAATACAATGGCTTCACCTTGGTCTGGTCCAGAACTAATCATAGCTCTTACCTCTTCAGTGTTTACAGATCTGAAGGAATGAGATGTGTATAAGCAACATGATGTAAGCTCCCCTAAGCCTCATTGAAAGGTTGAGCTGTCACTAGTTTGTTTACATCCGTCTCATCCCTTTAGATCTGCAAAAACCTAAGTGATTGATGCTTCTGGACTGAATCTTGTAATACGTTTAGGGGATCTATCTATATTTCTTAAACCCATCTGGTTTGTTGTCATCTGCAAAGGGTTAGTGGTTTTGGGACTGGGCTATTGTCCCCACTGTCAACAACCCCCTCCCACCCCCCAAGCTTCTCCCAACGGGACTTGCATTTCTCGATCTGTTATTGAACATTTTCTTTCTTGAAATATCCCACCTCAGTCCTGCCTCATTCCCTTGATAGTATTTGATGTTGCCAAATGCATATTTGTTTTTGTAGATTAACATTGTTGCATTGGATGAATTGACTCAATAGTACTGTTGGCCCTTCATTTCAATTGAAGCCCTATCTTTATACTTCACCCCAATACTCCTGATTTTAATTTCTACTCCCTCAAATTCTATTTGATGTGAGTAAATGGGACACGCTGTTCCTATTAAATGTAATTGTAGCCAACAGTGTATTTGTATGAATATGTTTTTGCAGCATTGTGCACATTCAACGGTCATTCATCTACTCTGCTTCTTTATAAGGATATTATCATAGGCTGTCACGGAATGAATTCCTTGAATTGCACTGTGTCTCAGAATTCCATGTTAACTATTGAATGGAATTCAGTGATGTGAGTTTTATCGTTCCAACTGGGTCGATATTGCAATTACGCTAAAGGCATGTCAGACCTGATACTATGAACTCTCAGCTGTAATCTATAGAAGAAAACAGTTTTCTCCTCATGCCGTAATTTCTTCACAGATATTATTTCCACAGAAGACAGCAACTTAAGTATGCTGCTGCTGTTTTTTAAACCAGATCAGGGTGATTGGGGAGGGGATAAGTCTTGGGGACTGAGTGGGCGATTAGGCTTTTGTACATTGAAATAATTGTATTGATTATTTCTCCTATTTTTTTTCTGATTTGTTGTATTTTATTATTGTAGACCGCAATCAACCTACCAATTGAAAATAAAAAGCCTTTAACTTAA
>XM_036976838.1
gttttgctCGCTCTGATGCTTTCTCTGGTAAAATACATTCGAGCCTCtagcgaattgaaggaaaatgatgaaaacacagagagaggaaagAGATTATGTGATTATGTATGTGATTTGCTACTCGAGGAATCAAATGTTCAACCAGTATCCACTCCAGTCACTGTTTGTGGAGACATTCATGGCCAGTTTTATGACCTATGTGAACTCTTCAGAACTGGCGGACAAGTTCCAGACACAAACTACATTTTTATGGGAGACTTTGTGGACAGGGGATACTACAGCTTGGAGACATTCACGTACCTGCTAGCCTTAAAAGCCAAGTGGCCGGACCGCATCACGCTTCTACGAGGAAATCACGAAAGCAGGCAGATAACACAGGTGTACGGCTTTTACGATGAGTGCCAAACTAAATATGGGAATGCAAATGCGTGGCGATACTGCACTAAAGTGTTTGACATGCTAACAGTAGCGGCTTTGATAGACGAGCAGGTCCTTTGTGTGCATGGTGGTCTTTCACCTGACATCAAGACCCTGGACCAGATCCGAACAATCGAGCGCAACCAAGAGATTCCCCACAAGGGGGCCTTCTGTGACCTGGTGTGGTCGGACCCAGAGGATGTGGACACCTGGGCCATCAGTCCGCGAGGTGCAGGCTGGCTGTTTGGCGCCAAGGTCACTAATGAGTTTGTTCACATCAATAATCTGAAGCTGATTTGCCGTGCACACCAGCTGGTCCACGAGGGCTACAAGTTCATGTTTGACGAGAAGCTGGTGACGGTGTGGTCCGCGCCCAACTACTGTTACCGCTGTGGAAACATTGCCTCCATCATGGTCTTCAAAGACGTGAACACCCGGGAGCCCAAGCTGTTCCGCGCCGTGCCCGACTCGGAGCGGGTCATCcctcccagaacaacaacacctTATTTCCTCTAATCACAGGAGCCATTTTGTTCACTCCAAAAATAGCCTGTTGCCTCTTTCCCTCACCCATTTCCCGTTTGCAGTCTTAAGGAAGTGGATAGGTGTAACTAAGAAATGACAATACAATGGCTTCACCTTGGTCTGGTCCAGAACTAATCATAGCTCTTACCTCTTCAGTGTTTACAGATCTGAAGGAATGAGATGTGTATAAGCAACATGATGTAAGCTCCCCTAAGCCTCATTGAAAGGTTGAGCTGTCACTAGTTTGTTTACATCCGTCTCATCCCTTTAGATCTGCAAAAACCTAAGTGATTGATGCTTCTGGACTGAATCTTGTAATACGTTTAGGGGATCTATCTATATTTCTTAAACCCATCTGGTTTGTTGTCATCTGCAAAGGGTTAGTGGTTTTGGGACTGGGCTATTGTCCCCACTGTCAACAACCCCCTCCCACCCCCCAAGCTTCTCCCAACGGGACTTGCATTTCTCGATCTGTTATTGAACATTTTCTTTCTTGAAATATCCCACCTCAGTCCTGCCTCATTCCCTTGATAGTATTTGATGTTGCCAAATGCATATTTGTTTTTGTAGATTAACATTGTTGCATTGGATGAATTGACTCAATAGTACTGTTGGCCCTTCATTTCAATTGAAGCCCTATCTTTATACTTCACCCCAATACTCCTGATTTTAATTTCTACTCCCTCAAATTCTATTTGATGTGAGTAAATGGGACACGCTGTTCCTATTAAATGTAATTGTAGCCAACAGTGTATTTGTATGAATATGTTTTTGCAGCATTGTGCACATTCAACGGTCATTCATCTACTCTGCTTCTTTATAAGGATATTATCATAGGCTGTCACGGAATGAATTCCTTGAATTGCACTGTGTCTCAGAATTCCATGTTAACTATTGAATGGAATTCAGTGATGTGAGTTTTATCGTTCCAACTGGGTCGATATTGCAATTACGCTAAAGGCATGTCAGACCTGATACTATGAACTCTCAGCTGTAATCTATAGAAGAAAACAGTTTTCTCCTCATGCCGTAATTTCTTCACAGATATTATTTCCACAGAAGACAGCAACTTAAGTATGCTGCTGCTGTTTTTTAAACCAGATCAGGGTGATTGGGGAGGGGATAAGTCTTGGGGACTGAGTGGGCGATTAGGCTTTTGTACATTGAAATAATTGTATTGATTATTTCTCCTATTTTTTTTCTGATTTGTTGTATTTTATTATTGTAGACCGCAATCAACCTACCAATTGAAAATAAAAAGCCTTTAACTTAA

Function

symbol description
ppp6c Predicted to enable protein serine phosphatase activity and protein threonine phosphatase activity. Acts upstream of or within response to yeast. Orthologous to human PPP6C (protein phosphatase 6 catalytic subunit).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 catalytic subunit

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601773.2 False 2375 mRNA 0.43 7 14039378 14050589
XM_036976839.1 False 2254 mRNA 0.43 7 14039378 14050735
XM_021601774.2 False 2338 mRNA 0.43 7 14039378 14050969
XM_036976838.1 True 2215 mRNA 0.43 7 14039378 14052301

Neighbor

gene id symbol gene type direction distance location
scai LOC106570398 coding downstream 8990 13991297 ~ 14030388 (-)
LOC118964563 NA coding downstream 34686 14004305 ~ 14005852 (-)
LOC110523244 LOC106570388 coding downstream 56475 13973298 ~ 13982903 (-)
si:dkey-220k22.1 LOC106570374 coding downstream 66117 13892936 ~ 13973261 (-)
glipr2 LOC106570345 coding downstream 241722 13782097 ~ 13797656 (-)
si:dkey-220k22.3 LOC106570668 coding upstream 5264 14057565 ~ 14060716 (-)
p2rx4a p2rx4 coding upstream 10719 14063020 ~ 14080614 (-)
LOC118964564 gstt2b coding upstream 38337 14090638 ~ 14092907 (-)
LOC110523249 LOC106570430 coding upstream 50026 14102327 ~ 14104808 (-)
LOC110523251 LOC106570444 coding upstream 53464 14105765 ~ 14128552 (-)
G370251 NA non-coding downstream 2570 14036525 ~ 14036808 (-)
G370250 NA non-coding downstream 2916 14036223 ~ 14036462 (-)
G370141 NA non-coding downstream 152872 13885217 ~ 13886506 (-)
G370072 NA non-coding downstream 303775 13735211 ~ 13735603 (-)
G370278 NA non-coding upstream 37692 14089993 ~ 14090353 (-)
G370258 NA non-coding upstream 45094 14097395 ~ 14097887 (-)
G370256 LOC100194703 non-coding upstream 46731 14099032 ~ 14100477 (-)
G368921 NA other downstream 1333286 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 1902588 12134052 ~ 12136790 (-)
G365752 NA other downstream 4849280 9189669 ~ 9190098 (-)
G364754 NA other downstream 4988670 9047542 ~ 9099000 (-)
G364322 NA other downstream 5735195 8303267 ~ 8304183 (-)
G370333 NA other upstream 154889 14207190 ~ 14208705 (-)
G370635 NA other upstream 375037 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 940827 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 1071174 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1643791 15693396 ~ 15707607 (-)

Expression


Co-expression Network