LOC110523249 (LOC106570430)


Basic Information

Item Value
gene id LOC110523249
gene name LOC106570430
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14102327 ~ 14104808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601777.2
TCAGACCAGATGCATTGTGGGAGCAGGTTGTGTAAACCAAAAATGTCAGCCTCAAGTTACAACAGTTTTTGGCGGACTGGCAGGGATGTTTTGCGGGTTCCGATAGCCAAAATCAGCCTAGCAGTTGCACTATCTAATGTCCCGTCGAGGTGCAGTGCCAGGGCATATAGCACAGGCGGCACCACGTTTGGATCCAAACTCATCTCCATTCTTCCCCTGCGCGCAACCAACAGGCGCGTCTTTGGGTTCGCTTTTTTGTTCGGAGGGGGAGTCGGCTTGTATCAAACCATACAATTCTCATTTCAACAGCATTTTGCAGAGGATGAATTGCCCAATCTCCCCAATCTCCAAAATAGCATCCCCACAAACCACGGCTCTGATCTGACGTTTGCCACCGACTTAACGTTTACCTTATACCAGTACAAGACCTGTCCATACTGCAGCAAAGTGCGGGCATTCCTCGACTACTATGGTTTTCAATATAAGGTTGTGGAAGTCAACCCTGTCATGCACACGGAGATCAAATGGTCATCGGAGTACCAAACGGTGCCCATTCTTATGGTGGAGGGGAAAGAAATTGTGCAACTGAACAACTCATCTGTCATTATCAGTGCAATGAAGACGTGCATGATTGACAAAGAAAGAACGATGTCAGAGGTTGTAAAGTACTTTCCGAGACTCCCGTCTACCAATGCCTGGGGGAATGAAGTTCTGGAGTACACTAACAAATACTGGGTGATGTTGAATGAGATTAAGATCACTGAGGTGTACACATCTAAAAATGCCAGAAAGGAGGAGGTACGATGGCGTCAGTGGGCCGATGACTGGCTAGTGAACCGGATAAAGCCTAATGTGTACAGGACTCCCGCTGAGGCCTTAGCCACCTATGACCACATAGTGCGTGAGGGCAACTTTGGTTCTGTTCCTTTTGCCAAGTACGGAGGGGCCTTCTATATGTTCTGGGCCTCCAAGGTCCTGAAAATCTGGTACAAGTTACAGGACGATGTAAGGGAAGATTTGTACATGGCTGTGAATGAGTGGATAACAGCTATTGGGAGGAAGAGGAAATTCATGGGTGGTGACAAACCCAACCTCGCTGATCTGGCGGTGTATGGAGTCCTCCGATCCATGGAGGACCTGGAGGCCTTTTACGACGTGATGGAAAACACCAAGGTGAAGAAGTGGTATCTGGCCACAGAGAAACAAGTGAAGGAGCAAGGTGGTCGGAACCTATAAAACCACTGCAGAACTATCATGACATAACTGAGTTCTAGGTTGCTGATTCAGGCTACCACTGCACATAGAACAGCTGGATGCAAAGGTTCTCTACCAGTCAGCACACTTTCATAACATGTTACAGGTGACAGTTTTATATGTGAATGAACGGACAGTCTACC
>XM_021601778.2
TCAGACCAGATGCATTGTGGGAGCAGGTTGTGTAAACCAAAAATGTCAGCCTCAAGTTACAACAGTTTTTGGCGGACTGGCAGGGATGTTTTGCGGGTTCCGATAGCCAAAATCAGCCTAGCAGTTGCACTATCTAATGTCCCGTCGAGGTGCAGTGCCAGGGCATATAGCACAGGCGGCACCACGTTTGGATCCAAACTCATCTCCATTCTTCCCCTGCGCGCAACCAACAGGCGCGTCTTTGGGTTCGCTTTTTTGTTCGGAGGGGGAGTCGGCTTGTATCAAACCATACAATTCTCATTTCAACAGCATTTTGCAGAGGATGAATTGCCCAATTACAAGACCTGTCCATACTGCAGCAAAGTGCGGGCATTCCTCGACTACTATGGTTTTCAATATAAGGTTGTGGAAGTCAACCCTGTCATGCACACGGAGATCAAATGGTCATCGGAGTACCAAACGGTGCCCATTCTTATGGTGGAGGGGAAAGAAATTGTGCAACTGAACAACTCATCTGTCATTATCAGTGCAATGAAGACGTGCATGATTGACAAAGAAAGAACGATGTCAGAGGTTGTAAAGTACTTTCCGAGACTCCCGTCTACCAATGCCTGGGGGAATGAAGTTCTGGAGTACACTAACAAATACTGGGTGATGTTGAATGAGATTAAGATCACTGAGGTGTACACATCTAAAAATGCCAGAAAGGAGGAGGTACGATGGCGTCAGTGGGCCGATGACTGGCTAGTGAACCGGATAAAGCCTAATGTGTACAGGACTCCCGCTGAGGCCTTAGCCACCTATGACCACATAGTGCGTGAGGGCAACTTTGGTTCTGTTCCTTTTGCCAAGTACGGAGGGGCCTTCTATATGTTCTGGGCCTCCAAGGTCCTGAAAATCTGGTACAAGTTACAGGACGATGTAAGGGAAGATTTGTACATGGCTGTGAATGAGTGGATAACAGCTATTGGGAGGAAGAGGAAATTCATGGGTGGTGACAAACCCAACCTCGCTGATCTGGCGGTGTATGGAGTCCTCCGATCCATGGAGGACCTGGAGGCCTTTTACGACGTGATGGAAAACACCAAGGTGAAGAAGTGGTATCTGGCCACAGAGAAACAAGTGAAGGAGCAAGGTGGTCGGAACCTATAAAACCACTGCAGAACTATCATGACATAACTGAGTTCTAGGTTGCTGATTCAGGCTACCACTGCACATAGAACAGCTGGATGCAAAGGTTCTCTACCAGTCAGCACACTTTCATAACATGTTACAGGTGACAGTTTTATATGTGAATGAACGGACAGTCTACC

Function

NR:

description
prostaglandin E synthase 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601777.2 False 1397 mRNA 0.48 7 14102327 14104808
XM_021601778.2 True 1313 mRNA 0.48 7 14102327 14104808

Neighbor

gene id symbol gene type direction distance location
LOC118964564 gstt2b coding downstream 9420 14090638 ~ 14092907 (-)
p2rx4a p2rx4 coding downstream 21713 14063020 ~ 14080614 (-)
si:dkey-220k22.3 LOC106570668 coding downstream 41611 14057565 ~ 14060716 (-)
LOC110523246 ppp6c coding downstream 50026 14039378 ~ 14052301 (-)
scai LOC106570398 coding downstream 71939 13991297 ~ 14030388 (-)
LOC110523251 LOC106570444 coding upstream 957 14105765 ~ 14128552 (-)
LOC118964565 NA coding upstream 65613 14170421 ~ 14172474 (-)
LOC118964566 NA coding upstream 117381 14222189 ~ 14225345 (-)
LOC118964567 LOC106570461 coding upstream 138246 14243054 ~ 14243735 (-)
chchd10 chchd10 coding upstream 150992 14255800 ~ 14259132 (-)
G370256 LOC100194703 non-coding downstream 1850 14099032 ~ 14100477 (-)
G370258 NA non-coding downstream 4440 14097395 ~ 14097887 (-)
G370278 NA non-coding downstream 11974 14089993 ~ 14090353 (-)
G370251 NA non-coding downstream 65519 14036525 ~ 14036808 (-)
G370297 NA non-coding upstream 35045 14139853 ~ 14140429 (-)
G370286 NA non-coding upstream 38472 14143280 ~ 14145174 (-)
G370287 NA non-coding upstream 40647 14145455 ~ 14147544 (-)
G370298 NA non-coding upstream 43688 14148496 ~ 14150068 (-)
G368921 NA other downstream 1396235 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 1965537 12134052 ~ 12136790 (-)
G365752 NA other downstream 4912229 9189669 ~ 9190098 (-)
G364754 NA other downstream 5051619 9047542 ~ 9099000 (-)
G364322 NA other downstream 5798144 8303267 ~ 8304183 (-)
G370333 NA other upstream 102382 14207190 ~ 14208705 (-)
G370635 NA other upstream 322530 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 888320 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 1018667 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1591284 15693396 ~ 15707607 (-)

Expression


Co-expression Network