chchd10 (chchd10)


Basic Information

Item Value
gene id chchd10
gene name chchd10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14255800 ~ 14259132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976849.1
ACAATCCACACAAGGTCACTGGCAAGTGTGCATGCTGTCATCAAGACCCAATCACGTTACAAAAGCCTTTGGAAGACGACTCTTTATATAAACGACGACAAGTTTACCCTGGCAGAAACAGCTTGAAGTGGTAAAGAACATCTGCATAAAAAATGGCAAGAGGAAGTCGCAGTGCTAGTCATTCTTCGGCACCAGCCAGCTCAGCTCCGACCTATCATCCCCCGTCCCAAAATTCCCCGGCCCCAGTCGCTCCAGCCCCATCAGCCCTGGCTGTTCCTGCCGCACCCCAAGGACCCGGCCTAATGGCCCAGATGGCCACCACCGCGGCCGGGGTGGCAGTGGGCTCTGCCATGGGCCATGTCATGGGCAGTGCCCTCACCGGTGCCTTCAGTGGTGGCAGCCCTGAGACAGCCAGACCCACCGCCAGCACATACCAGGAGGCCCCTCGACCTGCCTCATCCCAGCCGGGCCCATGCATGTTTGAGGTGCGACAGTTCCTGGACTGCGCCACCACTCAGGCTGACCTCAGCTTGTGTGAGGGCTTCAACGAGGCCCTCAAACAGTGCAAGGGCTCACACGGTGTGACATCACTGGTTTGAGCAAGGATGTTGCGAGTCAAAACAAGACACCATGTTCGGATAAATACCTACTGTAGACAGATGAGCCACTCGGTCATGAAATAAACTCTATTCAACTAACTCTCCACTATTTACAAGAAAGAAATTATGTTTGTTGACATGTAAGGAAATGTGTGTTGTTTGATTATTTTGGTAATGTATATGATATTGTGAAATAAAGAGCTGCTGGTTTACTTTCTG

Function

symbol description
chchd10 Acts upstream of or within axonogenesis and skeletal myofibril assembly. Predicted to be active in mitochondrion and nucleus. Is expressed in several structures, including adaxial cell; digestive system; musculature system; nervous system; and trunk. Used to study motor neuron disease. Human ortholog(s) of this gene implicated in frontotemporal dementia and/or amyotrophic lateral sclerosis-2. Orthologous to human CHCHD10 (coiled-coil-helix-coiled-coil-helix domain containing 10).

NR:

description
coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial

GO: NA

KEGG:

id description
K22759 CHCHD10; coiled-coil-helix-coiled-coil-helix domain-containing protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976849.1 True 818 mRNA 0.52 4 14255800 14259132

Neighbor

gene id symbol gene type direction distance location
LOC118964567 LOC106570461 coding downstream 12065 14243054 ~ 14243735 (-)
LOC118964566 NA coding downstream 30455 14222189 ~ 14225345 (-)
LOC118964565 NA coding downstream 83326 14170421 ~ 14172474 (-)
LOC110523251 LOC106570444 coding downstream 127248 14105765 ~ 14128552 (-)
LOC110523249 LOC106570430 coding downstream 150992 14102327 ~ 14104808 (-)
smarcb1b LOC100380734 coding upstream 54582 14313714 ~ 14333305 (-)
LOC110523260 NA coding upstream 90184 14346815 ~ 14350281 (-)
dync2i2 wdr34 coding upstream 170337 14429469 ~ 14433766 (-)
LOC110523265 LOC106570595 coding upstream 175114 14434246 ~ 14438495 (-)
pkn3 pkn3 coding upstream 201686 14460818 ~ 14480420 (-)
G370352 NA non-coding downstream 4554 14244425 ~ 14251246 (-)
G370315 NA non-coding downstream 24212 14226627 ~ 14231588 (-)
G370342 NA non-coding downstream 31742 14223041 ~ 14224058 (-)
G370341 NA non-coding downstream 35633 14219258 ~ 14220167 (-)
G370314 NA non-coding downstream 78718 14176471 ~ 14177082 (-)
G370622 NA non-coding upstream 51158 14310290 ~ 14310506 (-)
G370646 NA non-coding upstream 80164 14339296 ~ 14339515 (-)
G370648 NA non-coding upstream 83079 14342211 ~ 14342538 (-)
G370652 NA non-coding upstream 96294 14355426 ~ 14356293 (-)
G370333 NA other downstream 47095 14207190 ~ 14208705 (-)
G368921 NA other downstream 1549708 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2119010 12134052 ~ 12136790 (-)
G365752 NA other downstream 5065702 9189669 ~ 9190098 (-)
G364754 NA other downstream 5205092 9047542 ~ 9099000 (-)
G370635 NA other upstream 168206 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 733996 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 864343 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1436960 15693396 ~ 15707607 (-)
G372122 NA other upstream 1716474 15975606 ~ 15976116 (-)

Expression


Co-expression Network