mmp11b (LOC106570480)


Basic Information

Item Value
gene id mmp11b
gene name LOC106570480
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14272305 ~ 14308719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601785.2
GAACAAAGAAATAAGCGAGTATAAAATCCCCCTATGAGACACATCTCCGTCATTCACTGACTCCACTTCATCCCGCTCACATCCTCCGCCCTCTCTATACCCAAGGTGTGCTCAAGCGCGGTCAAACTGCGAGTCCGCTCCGAATCAAAAGATGATGCCGTCTCTTTGGTTTTTCTGTAGCATCTTTGCGTTGCACCTCTTGCTCTGCATTCATTCTCTGCCAGTACCGGAGTGGAGAGCCAGCAACAGGTACAAAGCCGCGGCGGGATGGCCTCAGAAGACTCACCCATATGGCCTGAAGAAGACGACAAGATTTGATCATACTCAGGACACTCTGAAGGAACAATTGCACCTGTCGGGAGGTGTCTATCCAGAGACTGTGTTGTCATGGAATGGCACAGAGTCAATCTGGAATCGGCCTCGCTGTGGTGTTCCAGACTATCCTACTCAGAAGCAAAGTGGCATCTCGGACTACCACATGACGAAGGGGGGCACCTTTGGAGGAAAGCAGCGGCGGAAGCGCTTCGTTGTCTTTGGGGGGCGCTGGGACAAGACTGACCTCACCTACAAGATCATGCGCTTCCCCTGGCAGTTGAGTAATGAGAAAGTCCGTCACATCTTGCAGGAGGCTCTGCGTGTGTGGAGTGAAGTCACACCCTTGAAGTTCACTGAGGTCAGCAGTGGGAGAGCTGACATCATCATCGACTTTACCAGGTACTGGCATGGTGATAACCTGCCTTTCGATGGTCCTGGAGGCATTCTGGCCCATGCCTTTTTCcccagaactcacagggcaggcgaCATCCACTTTGACTATGATGAGAGTTGGACAGTGGGAAACAGCATGGGCACGGATCTCCTGCAGGTGGCGGCCCATGAGTTTGGCCACGTCCTCGGCCTCCAGCATTCCCTGGTCGAAGGAGCCATCATGTCCCCCTTCTACAGCTTCTCCTATCCCCTGGAGCTGAGCGACGATGACAAGCAGGGCATCCAATACCTGTATGGTCCGCTGCGAAAAGCCCCTCCCGTCATCACAGAGACCAATGAGATCGAAACAACTGTGCCAGATCCCTGCAGGACTAACTTTGATGCCGTGTCAATGATCAGAGGGGAGATGTTCTTCTTCAAGTCCCGCTACGTGTGGCGTATCCGTGATGGCCAACTGCAGGCGGGGTACCCGGCGCTAGCAACACGCCACTGGAGGGGGATCCCCGACAACATCGATGCGGCCTACGAAGACAAGACGGGAAACAGCTGGTTCTTCCAAGGTGACAGTTACTGGGTGTTTGACGCGGAGAGGAGGATCACGGGGCCGGACTCAGTGCGTCGGCTGGGCCTTCAAGTGTCGGACATCCAAGCAGCCCTCATGTGGGGCGAGGACAAGGCCCAGAAGACCTACCTCTTCAAGTCGGGCACCTACTGGCGCTTCAGCCCCCTGGAGAACCGGGTGGACACAGCACACCCTCGTAGCATGCAGGACTGGAGGGGCATCCCCAAGGACATTGACGCAGCCTTCCAGGACCGATATGGCTTTGCTCATTTCCTGAGTGGGAGACAGTATTGGAAGTTTGACCCCGTGGAGGTGAAGGTTCTGGAAGGATACCCCCGCTATATCGGCATGGACTTCTTTGGCTGCCCTGCTTCCTTTTATCGATAAAGCCAGGAAGAGTCCATATCGCCCCAAGAGGTGAATGGAATATCAGGGCCATCTTTATTTTTTTGCTCTTAAGACTAATGTTGTTCCACTGGGACTTTAGACTGATACAATTACATCATTGTGTAACATAAACAGGATGACTGTTGATTTTGGTCTAATGGAGGTCAGGACTTGATGCTATTGGTTGAAACCTTCATTatgaccccagtctgaggtctgggGCAGTCTGAAGACCAATAGAAATTGAGGTCATAATTCAAAGGGTGAATTGAGGACATTTAGTTTCATCATCATCCACAATATGATAATAGCTGGTTTGAAATCGATGCACACTGTTTGAGAGATACGTTAAAGAGCGAACGGCCAGCTAACAGAAAAACAATGTGCCCAACTGGTATTTGTAAATGGACATTTTCGTTCAAGATAAGTAACTTCAATACTTTTGTTCACGATAATCATAACCCAATTTTAATCAATAGGCAGCTTTTTCTCAAGACGAATGCTTACCTCTGCATCAAATAATACGTTTTGGTATgctatatgtttttattttttcagAACAAAACCTTTTGTAATCGTCTTTAGCCTCTGGTACATACTATTTAACATGGCATTTAAAAGTAACATTTTACATAGGCTCATCTTTTCAAATCCGTAGGAACAGTGTAGTTACAGTATTATTTCAATACTCTATGAGTACTTTTCTCTATGAAGggaaatgttaaaaaaaattcTACCTCATATTCATCATCACCAGCACcaaccccaacatcaacatatgtgaaaatgcaCGTTTCTatgttttttataaaaaaatatagagGAAGCTTAAGTGTGTCACATGACATCATCGGTGTGCATCATGTGatttttaaccaattatgagtaggcattgcctactaattgtCGACTaatggttgatgatgtcattggaaacacttatttttctctatattttttaatacaaaacatagaaaaccacaattttcacatacagtatgttgatgtTGGGATGGTGCTGgcgatgatgaatatgaagttgaacattTTAGATATGTCCCTTTTAAAAACTACAACCGGTGCACTAGAAAAGTGAGGTGATAGTTCCATGTTTCTTATTGGTGCTCATCGCCCTTTCCATCGACAGCCAATGATACTCTTCTCAGGAAAAAGTACATTTAACAAACTATACCCtctgaattgttttttttttgcttgaTGTTTAGCCTTGATTCTTATTTATTGCTGTTTATGTGTTGTCAAAAATATTTTACCCACAGATGAGTCTCAAGTATTTATCTGTGCAGTCCTGCTTTCTTTTCTGCCATTGTTTAGACAAAACCCATCAGGTAGCAGTGTAAACCTATTTGAGAGGGACACACATTTTCTCTCCGGCCTCACTGAGCTCTCTATTTCACACACAGCTGCTAAAACTGACTCAACAATGAAGGTAAAGATGTACCTCAAATAGAGGGCTTTATCTTTAACAGTTAAAGGGATATTTCACTCCAAAATCAATGTTTGATAGACTTTTTTATACCTCAAAAGTAGGCCATCTGTTTTGTAGATCCAGCCATATGCCACTATCCAAAATGAAAGGTGTTAATGCATATAGCTGGAGGAGTGTAGATTCATCTTGACATTTTTTTGGTCTGAAAAGATCTGACAAAATTTGATTTGGGAGTATAACGTCCCTTTATTGATGTGATGATTTTACAGTGGTGAAAGCCAAGCATTGCATATCCAAAGTTGTCACGGTGATACCTCATCACGTAAAACGTCCTTCAGTTCTTTTACAAACTGCTCCTTCCAAGATGATGCTGTAAACCTTTTTCATGTTGTAGCGTGGAACCATTTGTCATGCAGCTAGCCTCAATTGCTAGTCATTGATGCTTCAATGTGTCAGTGCAGGCCACTGATACAATTTCCTCACTCTTTTTGATATGTTGTGATGTCATTGACTGCAAGATAACTATTTCATAAAGCTTGCACTGGTAGTTTTGGTGTCAGAGCATTGTCTGTAGAGTTATGTCTCGCGAACACTGTTTTCTTTTTTACCATGTATC

Function

NR:

description
stromelysin-3-like

GO: NA

KEGG:

id description
K07993 MMP11; matrix metalloproteinase-11 (stromelysin 3)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601785.2 True 3723 mRNA 0.45 8 14272305 14308719

Neighbor

gene id symbol gene type direction distance location
LOC110523253 LOC106570436 coding upstream 42997 14148432 ~ 14231585 (+)
LOC110523252 LOC106570453 coding upstream 129839 14128559 ~ 14142466 (+)
arpc5l arpc5l coding upstream 282078 13986695 ~ 13990227 (+)
ncs1a ncs1 coding upstream 390164 13860452 ~ 13882141 (+)
gpr107 LOC106570369 coding upstream 421498 13818327 ~ 13850807 (+)
LOC110523258 LOC106570496 coding downstream 36914 14345633 ~ 14347412 (+)
LOC110523259 odf2 coding downstream 42734 14351453 ~ 14367540 (+)
LOC110523261 sptan1 coding downstream 68240 14376959 ~ 14429468 (+)
LOC118964781 NA coding downstream 88091 14396810 ~ 14396945 (+)
uap1l1 uap1l1 coding downstream 129397 14438116 ~ 14447360 (+)
G370022 NA non-coding upstream 21107 14244259 ~ 14251198 (+)
G369974 NA non-coding upstream 124761 14145981 ~ 14147544 (+)
G369972 NA non-coding upstream 127201 14143417 ~ 14145104 (+)
G369976 NA non-coding upstream 133678 14137903 ~ 14138627 (+)
G370442 NA non-coding downstream 1303 14310022 ~ 14310505 (+)
G370443 NA non-coding downstream 2830 14311549 ~ 14311842 (+)
G370444 NA non-coding downstream 3450 14312169 ~ 14312573 (+)
G370452 NA non-coding downstream 30630 14339349 ~ 14339582 (+)
G370453 NA non-coding downstream 34628 14343347 ~ 14343596 (+)
G370360 NA other upstream 13172 14255803 ~ 14259133 (+)
G369763 NA other upstream 503009 13765247 ~ 13769296 (+)
G368440 NA other upstream 1163171 13108696 ~ 13109134 (+)
G367684 NA other upstream 2392270 11878329 ~ 11880035 (+)
G366973 NA other upstream 2843595 11425642 ~ 11428710 (+)
G370382 smarcb1 other downstream 12385 14321104 ~ 14325895 (+)
G370414 NA other downstream 58953 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 495942 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 739459 15047739 ~ 15054353 (+)
G371182 NA other downstream 815571 15124290 ~ 15128817 (+)

Expression


Co-expression Network