smarcb1b (LOC100380734)


Basic Information

Item Value
gene id smarcb1b
gene name LOC100380734
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14313714 ~ 14333305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976850.1
TATAAAAGAATGTTTGGCAAACATTTTATCACCGGTCAAATGCCAGGTTATAGACCGTAGAAATACAGTTTTTATATGTTTTATCTTGTCTTCACAAGACATCGCATATTGGCGCCGAACTGACACTTTTAAACACGACAGTTTGAGCATGCGCTGTGGAGCTTtgttactagctagctactgtaaaaATGGCGTTAAGCAAAACCTTTGGGCAGAAACCGATTAAATTTCAGTTAGAGCAAGATGGAGACTTTTATATGGTTGGATCAGAGGTTGGAAACTACCTGCGTATGTTCAGGGGCTCCCTGTATAAAAGGTACCCATCACTCTCGAGGAGGTTAGCCtcagtagaggagaggaagaaaattGTAGCATCATCGCACGCCACAAGTGTGACTCTGCTGAAGGCCTCCGAATGTGAAGAGATTTTCGAGGGGAACGATGAGAAGTACAAAGCTGTTTCCATCAGCACAGAACCACCGGCCTACCTCAGGGAGCAGAAGGGGAAGAGGAACAGCCAGTGGGTCCCCACACTGCCCAACAGCTCCCACCACCTGGACGCTGTTCCCTGCTCCACCACCATCAACCGCAACCGCATGGGCCGCGACAAGAAGAGGACCTTCCCCCTGTGCTTTGACGACCACGACCCGGCGGTGATCCACGAGAACGCGTCTCAGGCCGAGGTGCTGGTTCCCATCCGTCTGGACATGGAGATTGATGGGCAGAAGCTCAGAGATGCGTTCACCTGGAACATGAATGAGAAGCTGATGACCCCGGAGATGTTTGCAGAGATCCTGTGTGACGACCTGGACCTGAACCCACTGGCCTTCGTCCCGGCCATTGCCTCAGCCATCCGCCAGCAGATAGAGTCCTACCCCACAGACAGCATCCTGGACGAGCAGACCGACCAGAGGGTCATCATCAagctGAATATCCACGTGGGGAACATCTCCTTGGTGGACCAGTTTGAGTGGGACATGTCGGAGAGGGAGAACTCTCCGGAGACGTTTGCCCTCAAGCTGTGCTCCGAGCTGGGCCTGGGAGGAGAGTTTGTCACCACCATCGCCTACAGCATCCGTGGCCAGCTCAGCTGGCACCAGAGGACGTACGccttcagGTCTGATTTCAGTGAGAATCCCCTGCCTACGGTGGAAATCGCCATCCGCAACACAGGCGACGCTGACACATggtgccccctgctggagacccTGACAGACGCAGAGATGGAGAAGAAGATCAGGGACCAGGACAGGAACACTAGaCGAATGAGGCGACTTGCCAACACTGCCCCTGCCTGGTAGAGAGAAGCAGCAGTAAGCTACTACAGAGCCTCTGGTCAACAAATGGTCAACCCCAATGGGCcctctgagagacacacacaaactcaacAATAGACATTCCACTGGTCCCTTCTTACAGCCCCCATAATGTTAACTAACTCTACGCTTGGCTGTCATGTCCTCTGGACACTGATCCAGGACCATTGTCACATACCTAACTCCATTAATTACAAGAATTACATTTGATCCAGGAACAGGGACTTTTGTTGAAGGAGCCTTATCCATTTCTATTGCCGAATCCAAGCCCCTGTAGTGGTTCAAGCCGCTACTCATCTCTGATGAGACGAGGTGGTAAATGAAAGGTGCCATGGGTAGAGTGTATGGATCAGAATGAAATGTAGCCTTTGTTGTTTCTACGGACTCACCATCTAAGTGAGCTCAAACTGTAATACTGCTTTGGTGCACTCGTATCCCTCTTGATGGATGATGCAGATAGATGACTGACTGACCTGTCCGTTTTAATAGAAACTAATGTTACACTCGAGCAGACTCAACTCTTGCAAATAATGTAAAGTTATGTATTGTGCTTTCTTTTTGTAAAGGTGCTGATACTTTTAGTCaacgtttttgttttgtttcctttTTTAATAAAATGCCATAGACTTCATTACAGATGTAGTTTGTTGCTCTACAATCGTCAA
>XM_036976851.1
TTTATTATAAAAGAATGTTTGGCAAACATTTTATCACCGGTCAAATGCCAGGTTATAGACCGTAGAAATACAGTTTTTATATGTTTTATCTTGTCTTCACAAGACATCGCATATTGGCGCCGAACTGACACTTTTAAACACGACAGTTTGAGCATGCGCTGTGGAGCTTtgttactagctagctactgtaaaaATGGCGTTAAGCAAAACCTTTGGGCAGAAACCGATTAAATTTCAGTTAGAGCAAGATGGAGACTTTTATATGGTTGGATCAGAGGTTGGAAACTACCTGCGTATGTTCAGGGGCTCCCTGTATAAAAGGTACCCATCACTCTCGAGGAGGTTAGCCtcagtagaggagaggaagaaaattGTAGCATCATCGCACGCCACAAGTGTGACTCTGCTGAAGGCCTCCGAATGTGAAGAGATTTTCGAGGGGAACGATGAGAAGTACAAAGCTGTTTCCATCAGCACAGAACCACCGGCCTACCTCAGGGAGCAGAAGGGGAAGAGGAACAGCCAGTGGGTCCCCACACTGCCCAACAGCTCCCACCACCTGGACGCTGTTCCCTGCTCCACCACCATCAACCGCAACCGCATGGGCCGCGACAAGAAGAGGACCTTCCCCCTGTGCTTTGACGACCACGACCCGGCGGTGATCCACGAGAACGCGTCTCAGGCCGAGGTGCTGGTTCCCATCCGTCTGGACATGGAGATTGATGGGCAGAAGCTCAGAGATGCGTTCACCTGGAACATGAATGAGAAGCTGATGACCCCGGAGATGTTTGCAGAGATCCTGTGTGACGACCTGGACCTGAACCCACTGGCCTTCGTCCCGGCCATTGCCTCAGCCATCCGCCAGCAGATAGAGTCCTACCCCACAGACAGCATCCTGGACGAGCAGACCGACCAGAGGGTCATCATCAagctGAATATCCACGTGGGGAACATCTCCTTGGTGGACCAGTTTGAGTGGGACATGTCGGAGAGGGAGAACTCTCCGGAGACGTTTGCCCTCAAGCTGTGCTCCGAGCTGGGCCTGGGAGGAGAGTTTGTCACCACCATCGCCTACAGCATCCGTGGCCAGCTCAGCTGGCACCAGAGGACGTACGccttcagTGAGAATCCCCTGCCTACGGTGGAAATCGCCATCCGCAACACAGGCGACGCTGACACATggtgccccctgctggagacccTGACAGACGCAGAGATGGAGAAGAAGATCAGGGACCAGGACAGGAACACTAGaCGAATGAGGCGACTTGCCAACACTGCCCCTGCCTGGTAGAGAGAAGCAGCAGTAAGCTACTACAGAGCCTCTGGTCAACAAATGGTCAACCCCAATGGGCcctctgagagacacacacaaactcaacAATAGACATTCCACTGGTCCCTTCTTACAGCCCCCATAATGTTAACTAACTCTACGCTTGGCTGTCATGTCCTCTGGACACTGATCCAGGACCATTGTCACATACCTAACTCCATTAATTACAAGAATTACATTTGATCCAGGAACAGGGACTTTTGTTGAAGGAGCCTTATCCATTTCTATTGCCGAATCCAAGCCCCTGTAGTGGTTCAAGCCGCTACTCATCTCTGATGAGACGAGGTGGTAAATGAAAGGTGCCATGGGTAGAGTGTATGGATCAGAATGAAATGTAGCCTTTGTTGTTTCTACGGACTCACCATCTAAGTGAGCTCAAACTGTAATACTGCTTTGGTGCACTCGTATCCCTCTTGATGGATGATGCAGATAGATGACTGACTGACCTGTCCGTTTTAATAGAAACTAATGTTACACTCGAGCAGACTCAACTCTTGCAAATAATGTAAAGTTATGTATTGTGCTTTCTTTTTGTAAAGGTGCTGATACTTTTAGTCaacgtttttgttttgtttcctttTTTAATAAAATGCCATAGACTTCATTACAGATGTAGTTTGTTGCTCTACAATCGTCAA

Function

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X2

GO:

id name namespace
GO:0006337 nucleosome disassembly biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0043044 ATP-dependent chromatin remodeling biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0006281 DNA repair biological_process
GO:0000228 nuclear chromosome cellular_component

KEGG:

id description
K11648 SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976850.1 False 1981 mRNA 0.49 10 14313714 14333300
XM_036976851.1 True 1974 mRNA 0.49 9 14313714 14333305

Neighbor

gene id symbol gene type direction distance location
chchd10 chchd10 coding downstream 54582 14255800 ~ 14259132 (-)
LOC118964567 LOC106570461 coding downstream 69979 14243054 ~ 14243735 (-)
LOC118964566 NA coding downstream 88369 14222189 ~ 14225345 (-)
LOC118964565 NA coding downstream 141240 14170421 ~ 14172474 (-)
LOC110523251 LOC106570444 coding downstream 185162 14105765 ~ 14128552 (-)
LOC110523260 NA coding upstream 16011 14346815 ~ 14350281 (-)
dync2i2 wdr34 coding upstream 96164 14429469 ~ 14433766 (-)
LOC110523265 LOC106570595 coding upstream 100941 14434246 ~ 14438495 (-)
pkn3 pkn3 coding upstream 127513 14460818 ~ 14480420 (-)
slc25a25b LOC106570619 coding upstream 154445 14487750 ~ 14535122 (-)
G370622 NA non-coding downstream 3208 14310290 ~ 14310506 (-)
G370352 NA non-coding downstream 62468 14244425 ~ 14251246 (-)
G370315 NA non-coding downstream 82126 14226627 ~ 14231588 (-)
G370342 NA non-coding downstream 89656 14223041 ~ 14224058 (-)
G370341 NA non-coding downstream 93547 14219258 ~ 14220167 (-)
G370646 NA non-coding upstream 5991 14339296 ~ 14339515 (-)
G370648 NA non-coding upstream 8906 14342211 ~ 14342538 (-)
G370652 NA non-coding upstream 22121 14355426 ~ 14356293 (-)
G370653 odf2 non-coding upstream 24141 14357446 ~ 14358123 (-)
G370333 NA other downstream 105009 14207190 ~ 14208705 (-)
G368921 NA other downstream 1607622 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2176924 12134052 ~ 12136790 (-)
G365752 NA other downstream 5123616 9189669 ~ 9190098 (-)
G364754 NA other downstream 5263006 9047542 ~ 9099000 (-)
G370635 NA other upstream 94033 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 659823 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 790170 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1362787 15693396 ~ 15707607 (-)
G372122 NA other upstream 1642301 15975606 ~ 15976116 (-)

Expression


Co-expression Network