LOC110523258 (LOC106570496)


Basic Information

Item Value
gene id LOC110523258
gene name LOC106570496
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14345633 ~ 14347412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601787.2
AGGCGTTTCTCTACCGACCAATGCGCAGAAGAGAAGTGCAATCGCTTTCTCGAACAAAGTGAACACTCGCAGTAAACTGACCCCTGTAGCCATCTCATCTGACAGAACGGTCTCTTTACGAAATCATCATGCCGTTCATTGATTTGGAAAGTAACTTAGCTGCTAGTAAGTTTTCTGAGGATTTCTTGAAAAAGCTAGGGTCCAAAACAGCTGCTGTTCTAGGCAAACCCGAAGAGAGAATGATGTTGGTGGTGAAGCCTGGACTGCCAATGCTCATGGGTGGAACTTGCGCTCCGTGCGTCATACTGTCCGTGTCCGCCATCGGCGTCACTGACACTGCggagaagaacaaggaacacagtGCCAATATCTTCACTTTTCTTATTGAAGAACTTGGTCTTACTGaagacagGATCGTGATCAGGTTCTATGCACTGGAGCCTCATCAGGTTGGAAAGAAAGGTACTGTTATGAGTTACCTGTAGGCGGCACTGTGGACGACAGAGTGACTTCAAGCATCCATTCCACAACAGTTGCCATTGGAGAGGACAAACCCTGTCAGTGTTTCCACCACTCAATTGGACATGAGTGCCACATGTCGCCAATAAGACTTGCATTGCATTTTAGGATTATGGAATTTGTCCCCATGAAACTATGTCCTGGAACCAGGACTCATTCATTTAtattactgtacattactgtacatGTCTGCCATAGTAAACAGAACCACACATTTGACAAGCTAGATGATAAAATACCCTGATTAGAGGAAATGTAAGTCAATTGACCTGTATTCAATGTTATTACTATGTCATTTCAACTATTCATTCATATCACAAGAACATTGGATAATGTGGttattgattttttttctctgcTGTTTTGGTGGTAAGAATCATAATGACTAACATACACAaccgtcacttagaaatgtccttgtttttgaaagaaaagcatgtttcttttgtccatctaaaataacatcaaattgataaatacagagtttctctgtc

Function

NR:

description
D-dopachrome decarboxylase-A-like

GO: NA

KEGG:

id description
K10028 DDT; D-dopachrome decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601787.2 True 1013 mRNA 0.42 3 14345633 14347412

Neighbor

gene id symbol gene type direction distance location
mmp11b LOC106570480 coding upstream 36914 14272305 ~ 14308719 (+)
LOC110523253 LOC106570436 coding upstream 116325 14148432 ~ 14231585 (+)
LOC110523252 LOC106570453 coding upstream 203167 14128559 ~ 14142466 (+)
arpc5l arpc5l coding upstream 355406 13986695 ~ 13990227 (+)
ncs1a ncs1 coding upstream 463492 13860452 ~ 13882141 (+)
LOC110523259 odf2 coding downstream 4041 14351453 ~ 14367540 (+)
LOC110523261 sptan1 coding downstream 29547 14376959 ~ 14429468 (+)
LOC118964781 NA coding downstream 49398 14396810 ~ 14396945 (+)
uap1l1 uap1l1 coding downstream 90704 14438116 ~ 14447360 (+)
LOC110523268 LOC106570653 coding downstream 198157 14545569 ~ 14547879 (+)
G370428 NA non-coding upstream 83 14344984 ~ 14345550 (+)
G370454 NA non-coding upstream 1686 14343673 ~ 14343947 (+)
G370453 NA non-coding upstream 2037 14343347 ~ 14343596 (+)
G370452 NA non-coding upstream 6051 14339349 ~ 14339582 (+)
G370444 NA non-coding upstream 33060 14312169 ~ 14312573 (+)
G370455 NA non-coding downstream 3428 14350840 ~ 14351142 (+)
G370403 NA non-coding downstream 21597 14369009 ~ 14369485 (+)
G370457 NA non-coding downstream 22090 14369502 ~ 14369738 (+)
G370458 NA non-coding downstream 22583 14369995 ~ 14370231 (+)
G370472 NA non-coding downstream 54427 14401839 ~ 14402147 (+)
G370382 smarcb1 other upstream 19738 14321104 ~ 14325895 (+)
G370360 NA other upstream 86500 14255803 ~ 14259133 (+)
G369763 NA other upstream 576337 13765247 ~ 13769296 (+)
G368440 NA other upstream 1236499 13108696 ~ 13109134 (+)
G367684 NA other upstream 2465598 11878329 ~ 11880035 (+)
G370414 NA other downstream 20260 14367672 ~ 14368161 (+)
LOC118964542 LOC106569496 other downstream 457249 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 700766 15047739 ~ 15054353 (+)
G371182 NA other downstream 776878 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 1444147 15791559 ~ 15795122 (+)

Expression


Co-expression Network