LOC110523260



Basic Information


Item Value
gene id LOC110523260
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14346815 ~ 14350281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_002473417.2
ATTTTGGATACCAAAAAGTAGTGTGTGTAGTGATCAACCATGGTGATCAGTTCGGCTCAGCTGCTTAACATTATGGAGGATCTGGACTCAGACGGGTTGAAGAGATTTCAGTGGTTCCTGACTCAGGGTGTGTTGAATGACTATCCTCCCATCCCAAAGAGCTTGCTGGAGAATAGAGACAGGATGGACACAGTGGATAAGATGGTGCAGAGCTACAGACTGGACGGTGCTGTGACAATCACTCTGAAGATCCTGGAGAAGATGAACCAGAATAGTCTCGCTGGGaagttaaaaaaatacatatagCTAGAGAGAAGAGGCTCAGTGGCTCTACTGACCAAGCTGATAAATAAGGATAAAGCTAAGGGGAGATTCTACCTGGCCCTGTCAGAGGACCTGGAGAAGCAGACAACATCCTGAAAGATGTCATGCATACAGCAAGATTAAAGGTTTGTTGTTCTGAATTCAACACAAACCAAACGAGAATGAGCAAGAACATCTTCATTTGCCTTGCTGTTTCAAACAAAAGGACATTACTGTATACTAATAAACTGATCCAGCAGGGGTTGTTACAAGGCAAA
>XR_002473416.2
ACCTGCCTGAGGCACCCAAGGAAGAAGGAGTCTGTGAGTTGTTTCCCGCCAGAGTGTACTCATATACAGATATTTCCTGGTGTCAAAAGTGAAAGTAAACCCCGGGTGTTGCAATCGTGACACGTTGGCACTGAGAAAAGCTTATTTTGGATACCAAAAAGTGTGTGTAGTGATCAACCATGGTGATCAGTTCGGCTCAGCTGCTTAACATTATGGAGGATCTGGACTCAGACGGGTTGAAGAGATTTCAGTGGTTCCTGACTCAGGGTGTGTTGAATGACTATCCTCCCATCCCAAAGAGCTTGCTGGAGAATAGAGACAGGATGGACACAGTGGATAAGATGGTGCAGAGCTACAGACTGGACGGTGCTGTGACAATCACTCTGAAGATCCTGGAGAAGATGAACCAGAATAGTCTCGCTGGGaagttaaaaaaatacatatagCTAGAGAGAAGAGGCTCAGTGGCTCTACTGACCAAGCTGATAAATAAGGATAAAGCTAAGGGGAGATTCTACCTGGCCCTGTCAGAGGACCTGGAGAAGCAGACAACATCCTGAAAGATGTCATGCATACAGCAAGATTAAAGGTTTGTTGTTCTGAATTCAACACAAACCAAACGAGAATGAGCAAGAACATCTTCATTTGCCTTGCTGTTTCAAACAAAAGGACATTACTGTATACTAATAAACTGATCCAGCAGGGGTTGTTACAAGGCAAA
>TU421193
AGTAAACCCCGGGTGTTGCAATCGTGACACGTTGGCACTGAGAAAAGCTTATTTTGGATACCAAAAAGTGTGTGTAGTGATCAACCATGGTGATCAGTTCGGCTCAGCTGCTTAACATTATGGAGGATCTGGACTCAGACGGGTTGAAGAGATTTCAGTGGTTCCTGACTCAGGGTGTGTTGAATGACTATCCTCCCATCCCAAAGAGCTTGCTGGAGAATAGAGACAGGATGGACACAGTGGATAAGATGGTGCAGAGCTACAGACTGGACGGTGCTGTGACAATCACTCTGAAGATCCTGGAGAAGATGAACCAGAATAGTCTCGCTGGGaagttaaaaaaatacatatagCTAGAGAGAAGAGGCTCAGTGGCTCTACTGACCAAGCTGATAAATAAGGATAAAGCTAAGGGGAGATTCTACCTGGCCCTGTCAGAGGACCTGGAGAAGCAGACAACATCCTGAAAGATGTCATGCATACAGCAAGATTAAAGGTTTGTTGTTCTGAATTCAACACAAACCAAACGAGAATGAGCAAGAACATCTTCATTTGCCTTGCTGTTTCAAACAAAAGGACATTACTGTATACTAATAAACTGATCCAGCAGGGGTTGTTACAAGGCAAACTTAAGACTAACAATATTGTTTGGAACCCAGGAAGTGTACCTGCTGCCTTGCCAGCTAAttagggatcctaataaatacaaaattgtGTAATGTATGGACAGCAAGCACACAGTCGAAATATACATTTATTTGTTTGCCTTCACTTGTACATGACTGTTTGACAAGATTAGGCCTAATACTGGACTGTTGTGGGCTGTATTGCATGGAAAGATagcctttttttcttttttaacaTTAGCTTGGTTTACAGTGCACTGTTCCTAAAtatggagtcacttagaaatgtcattgtttttgaaagaaatacacatttttatccattaaaataacgtacaatttatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaaaggcagatctggtccttctttggacaccgtgttaacaaacctccaaacggggttcaacgccatacaacactcctttcgtgggctccaactgctcttaaatgctagtaaaaataAGTgcctgctcttcaaccgattgctgcccgcaccctcagcttcctatttcgcaacaaagcctccttcactcatgccgccaaacatacccttgtaaaactgactatcctaccgatccttgatttaggcgatgtcatttacacaATAGCCCTCAACACTCTTCTCATCAAATTGGAtgtagtttatcacagtgccatccgtatactctcgttggctggccctcactacatatccgtcgcaaacccactggctccaggtcatctataagtctttgctaggtaaagctccgccttatctcagctcattggtcaccatagcaacacccacctgcagcatgcgctccagcaggtacagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaaccgtgtgtgaaaaccttgtgaaaacttacagaaaacatttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttattttccaccatcatttgcaaacaaattcataaaaaatcctacaatgtgattttctggattttttcccccctcattttgtctgtcatagttgaagtgtacctatgatgaaaatcacaggcctctctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatattgcacTAGtcttccccaaagccaacacttcctttggccgccttgcCTTCCAGTGCTCTGCTGCCAacgactggaacaaattgcaaaaatcttcgattacaggctcaaaatggccagaaacaaataattttcttctgaaactcgtcagtctattcttattcttgttttggggttttaggctgagtttctgtacagcactttgagatatcagctgatgtaagaagggctgtataaatcaatttgatttgattctgaaaAATTAAGgcaattccatgtgagaaattgccaagaaactgaggatctcgtacaacgttgtgtactactcctttcacagaacagcgcaaactggctctaaccagaatagaaagaggagtgggaggccccggtgcacaactgagcaagaggacaagtacattaatgcctagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaatagtacccacaaaacaccagtctcaacgtcaacagtgaagaggcatctccgggatgctggccttctaggcagagttgcaaagaaaaagccctatctcagactggccaataaaaataaaatatggtttaaagaacacagacactggacagagaaactctgtatttatcaatttgatgttattttagatggacaaaagaaacatgcttttctttcaaaaacaaggacatttctaagtgacggtTGTGTATGTTAGTCATTATGATTCTTACCACCAAAACAgcagagaaaaaaaatcaataaCCACATTATCCAATGTTCTTGTGATATGAATGAATAGTTGAAATGACATAGTAATAACATTGAATACAGGTCAATTGACTTACATTTCCTCTAATCAGGGTATTTTATCATCTAGCTTGTCAAATGTGTGGTTCTGTTTACTATGGCAGACatgtacagtaatgtacagtaataTAAATGAATGAGTCCTGGTTCCAGGACATAGTTTCATGGGGACAAATTCCATAATCCTAAAATGCAATGCAAGTCTTATTGGCGACATGTGGCACTCATGTCCAATTGAGTGGTGGAAACACTGACAGGGTTTGTCCTCTCCAATGGCAACTGTTGTGGAATGGATGCTTGAAGTCACTCTGTCGTCCACAGTGCCGCCTACAGGTAACTCATAACAGTACCTTTCTTTCCAACCTGATGAGGCTCCAGTGCATAGAACCTGATCACG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002473417.2 False 581 mRNA 0.44 3 14349316 14350138
XR_002473416.2 False 721 mRNA 0.45 3 14349316 14350281
TU421193 True 3129 lncRNA 0.41 3 14346815 14350188

Neighbor


gene id symbol gene type direction distance location
smarcb1b LOC100380734 coding downstream 16011 14313714 ~ 14333305 (-)
chchd10 chchd10 coding downstream 90184 14255800 ~ 14259132 (-)
LOC118964567 LOC106570461 coding downstream 105581 14243054 ~ 14243735 (-)
LOC118964566 NA coding downstream 123971 14222189 ~ 14225345 (-)
LOC118964565 NA coding downstream 176842 14170421 ~ 14172474 (-)
dync2i2 wdr34 coding upstream 79188 14429469 ~ 14433766 (-)
LOC110523265 LOC106570595 coding upstream 83965 14434246 ~ 14438495 (-)
pkn3 pkn3 coding upstream 110537 14460818 ~ 14480420 (-)
slc25a25b LOC106570619 coding upstream 137469 14487750 ~ 14535122 (-)
LOC110523275 NA coding upstream 415895 14766176 ~ 14769160 (-)
G370648 NA non-coding downstream 6778 14342211 ~ 14342538 (-)
G370646 NA non-coding downstream 9801 14339296 ~ 14339515 (-)
G370622 NA non-coding downstream 38810 14310290 ~ 14310506 (-)
G370352 NA non-coding downstream 98070 14244425 ~ 14251246 (-)
G370315 NA non-coding downstream 117728 14226627 ~ 14231588 (-)
G370652 NA non-coding upstream 5145 14355426 ~ 14356293 (-)
G370653 odf2 non-coding upstream 7165 14357446 ~ 14358123 (-)
G370656 NA non-coding upstream 13256 14363537 ~ 14365844 (-)
G370658 NA non-coding upstream 18344 14368625 ~ 14368840 (-)
G370659 NA non-coding upstream 19786 14370067 ~ 14370272 (-)
G370333 NA other downstream 140611 14207190 ~ 14208705 (-)
G368921 NA other downstream 1643224 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2212526 12134052 ~ 12136790 (-)
G365752 NA other downstream 5159218 9189669 ~ 9190098 (-)
G364754 NA other downstream 5298608 9047542 ~ 9099000 (-)
G370635 NA other upstream 77057 14427338 ~ 14428591 (-)
LOC110524957 LOC106569957 other upstream 642847 14988147 ~ 14995197 (-)
G371294 LOC106569911 other upstream 773194 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 1345811 15693396 ~ 15707607 (-)
G372122 NA other upstream 1625325 15975606 ~ 15976116 (-)

Expression



Co-expression Network