LOC110523268 (LOC106570653)


Basic Information

Item Value
gene id LOC110523268
gene name LOC106570653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14545569 ~ 14547879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601816.2
CACAACGAACGTAAGCGTTGTTtgtaggaagaagaagaagaagccgaTTCTGGAAGCCATTACGTTGCGCAGATCAATTGAGTAAATCCTACTATTTTTGCGTACAATACGCACAATTGTATTTTAAAAACAGGAATTTATTCAAATATGGCATCgaatacaaaaaaaagaaaaatgaatTTTTCAGAGAGGGAGGTCGAAATTATTGTGGAGGAAATAGAGAAACAAAAGCACACACTCGTTAACCACTTCAATGCTGGAGTCACTCACATAGCAAAGAATAACGCGTGGATAGAAATTCTGAAGAAGGTGAACGCTGTAACAACATGCCCAAGAGAGTTGGCTGAAGTCAAGAAGAAGTGGTCGGATATGAAGACCGAGGTGAGGCGCAAAGTGGCCCAGGCTAGGGCGGCAATTGAGGAGACCACTACCGACTGCACTCCGGTTCACGTCATCCTCACTGCTATGCAGCAGCGTATTTGTAACCTTTTGGGAGAGGCGACTATCATCAGTTTACCTACTGGAGACCCAGATGCTGAGATAACTTTACCTGTTACTATGAGTTCAGCCACCACCGTGACACTCACAGAGAGCCTTCAGACAGCTTCAGCATCATGCGAGGAGACTAAATTAGATGTCGAGACCACATACCACACATTGGAGGAAGGCGGTGTGGTGGAGTACTGCACCACCACTGAAGCCACTCCCACCGTGGTGACCGCTGTGGAGTCGCATCCGGTGGAGATGCTGACGTCAGTGTCGTCTTCTCCGCCACACAGCCAGGCCAAGCCCCAGGAGCTGAAGAGCCGCATCGCCCTCAACTCAGCCCGGCTCCTCCAAGAACAGCGGGTCACCAATGTACACGTGAGGCAGATTGCCCAGCACCTGGAGGGCCAGAACGAGCTGCTGCAGATGATCCGGAGGTCCCAGGAAGCACAGGCCTACGCCCAGGAGAggcaggcccaggccctggagGGAACCCAGGCAGCCCTGCTGGCCCTGGTTCAGATGATGAGGCCTGCTCTCAAGGACCTGAGGAAGTTCCTGCAGAGCGGGACTGACAACTCCAACAACAGCTCTGGGGCTGCTGCAGAGGGTTCAGAACAGAGGCCCAAGACCCCGCCTCCACAGCCAGCAGACGAAGGCTAATAaagactcagtgtgtgtgtgtttgtttgtttttgtttgtgtgtgagagagagagagagaatgagaaagtgtgtgtgtgcgtgaatgaGAGAGGGTGTATGAAATGCATTTGTGAGCTTGCTCATGTTTGTGAGAAAGAGAATTGTAATAAGTTGCCTTAGAACAAGCatttaggtttagggttgtagTTCTAGAAATACATATCTAGATAGAGATAAGTTGCTGTATTGGTTGTAAAATGAAGTTGACATTTTCTGCTATTGATTGGTGTAATTGACCCTAGCCATACTGACTAAAAAGAGTATACCGGATTGTCATAACCCTTTTTCTTCTTAGTCAGCATGGCTAGATTGATTTTtggaattaaatattttttttctttacagCCAGTGGGCCATAGTTACATCACATTTTTATCTCTTTGCAGAATTTGCTCATTATTTTCAAAATCAATGCAACAAAAATAAACTCTTTCTTTAAATGATACCATAAA

Function

NR:

description
nuclear apoptosis-inducing factor 1-like isoform X1

GO: NA

KEGG:

id description
K23221 NAIF1; nuclear apoptosis-inducing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601816.2 True 1642 mRNA 0.47 3 14545569 14547879

Neighbor

gene id symbol gene type direction distance location
uap1l1 uap1l1 coding upstream 98209 14438116 ~ 14447360 (+)
LOC110523261 sptan1 coding upstream 116101 14376959 ~ 14429468 (+)
LOC118964781 NA coding upstream 148624 14396810 ~ 14396945 (+)
LOC110523259 odf2 coding upstream 178029 14351453 ~ 14367540 (+)
LOC110523258 LOC106570496 coding upstream 198157 14345633 ~ 14347412 (+)
fam102ab LOC106569988 coding downstream 64 14547943 ~ 14630069 (+)
LOC110523269 LOC106569993 coding downstream 94894 14642773 ~ 14672009 (+)
dpm2 NA coding downstream 130241 14678120 ~ 14684431 (+)
pip5kl1 LOC106570018 coding downstream 136715 14684594 ~ 14693573 (+)
sh3glb2b sh3glb2 coding downstream 158916 14706795 ~ 14759767 (+)
G370524 NA non-coding upstream 10574 14532965 ~ 14534995 (+)
G370522 NA non-coding upstream 14646 14530573 ~ 14530923 (+)
G370520 NA non-coding upstream 15981 14529264 ~ 14529588 (+)
G370516 NA non-coding upstream 19010 14526283 ~ 14526559 (+)
G370402 LOC101064074 non-coding upstream 108563 14434249 ~ 14437006 (+)
G370575 NA non-coding downstream 93641 14641520 ~ 14641856 (+)
G370539 NA non-coding downstream 128233 14676112 ~ 14677187 (+)
G370414 NA other upstream 177408 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 219674 14321104 ~ 14325895 (+)
G370360 NA other upstream 286436 14255803 ~ 14259133 (+)
G369763 NA other upstream 776273 13765247 ~ 13769296 (+)
G368440 NA other upstream 1436435 13108696 ~ 13109134 (+)
LOC118964542 LOC106569496 other downstream 256782 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 other downstream 500299 15047739 ~ 15054353 (+)
G371182 NA other downstream 576411 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 1243680 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1671727 16218328 ~ 16220933 (+)

Expression


Co-expression Network