LOC110523275


Basic Information

Item Value
gene id LOC110523275
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14766176 ~ 14769160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601842.2
caagtcagttcgagtcaaaaggctcaagtcaaagttgagttgcaagtcatcatatttgtgactcgagtccacacctctgtgtatataggacttgcatccttggcacaaagtTATATTACATTCGACTCAATCaataggcttcattaatgtcattcagactgttttgaagttgatacaactggttatgatagctgaggttcatagctagGATCTGATCTAATATGTATATCAAACGCTTAGAATCCATAGACAGCTCGGCTACATAGCTAGCTACGCATCCATAGGCATACACCATTAATATAAGATAAAATAGCGTAATTAATCTTTTGTCTACATTGAACTGCCTTAATATGTGCATGATAAACTACCTTTACACCCACAGCTCTGTCGATTAATTTGAGAGTGGTCATTTATAGCAGCATGAGGGGTAGTCTGTAATGCACGATTTAGGGGATTTTCCCGGGGCACATGTGCACTGATGCACTGACAGCCGAGTCGCGTAGGCGGTAGCATAACTATAAAATGGGATGTATTTCAATAAGAAGATAAAACGTTACTTTAGACTTCGTAGTGGTGGTTTGATATGGATAAGTGCGCAAGGAATAGCGAGATTCCTCACGATACGTTGATTTCAATGGCGCAGCAAGAGTCTGTTGTTCTTTTGCTCAAACACTGTCAAGAAATGAAGCGACAGGAGAGTCGCTTGCGTCTTGTCACGTTATTCTTGGTTCTGGGTTGTGCAGCTGTATTTGTCTTTACGCAGCGTGTGAATAGAGACTGTAATGAGAAGGATTCATTCAAACATGCAGAATACTCACGACAGCAAGCTATAGATCGTCAAGAACAGAACCCGAAGCCAAACGCTCACCTGACAACATCATCAAGGTGCAACTTCGTGCCTGAAGATTACATCCAATGGGAACACCGGGAAACTGGCTTGGTGCACATGCAAAATTTCACCTATGATGAGGAGAAGCATGCTCTGGTTGTCCCTCAGGGAGGCCGATACTATGTCTACGTGGGGTTCAACTTTCGAATGCCGGATAAAGACAAGGTATCTGGCGAGATCCATTTTATTAGCCTGAAAGTCCAGAAATTCTCCAATAGATACCCAAAAAATTGCTCTATCATGGAAGTCAAGGATAGCATACCAGATAATAGGAGAGGAGCGAGGACTGTGTACACGGGACAGGTGGTTGCTCTGGAGGAAGGGGACCTCCTGAGGGTGTCCATTAATGAAGACAATTATGAACTGATTGACTGTTCAGCAGAGACTACCATGTATATTGGTGCTTTTCTCCTCTAGACAGAACATGTCTATTCCAAAAATAGTCAGTCTGTGTggatttatattatttatttccaCGCTTACTTTTAGTAGGACCAGTGCATGTTTCAAGGCACATTTTAAAATCCTTGTGGATACAATGCTCCTGTAACATGCAGGTATTAGTTAAGGCTTTCCTTCTGATAAAGCTGACCTTATttcagggtggcaggtagcctagtggtagggcattggactagtaaccgaaaggttgctagatcaaatccccaagctgtcaaggtaaaaatctgttgttctgcccctgaacaaaacagttaaacccactgttcctaggccatcattgtaaataagaatttgctaaGCTGACTTGCCgtgttaaataaatgtattaattTCATAAGTACTGTTTGCTACACATTTCCTTTCTTGATCAAGATTAATTACATTGTTGTTAAATGAAATAACTTATTATGATTTTATAAAGTGGGGTCAATTCCTAACTCAAAATGTTGCCTAATCTTTAACGCATGAGATTTGTGCAAGAGTCAACGTAGGATTTGACCCTTGGGCTACAGCCGCTACAGACATATGACGTTTTTATTTTTGTGTCCCTCAAAAACTCAAGTAAATTATTTTCAGACGAGTTGCATACACATCTCTGTTGTCCATCACCTGTCAATGGATTACTCCCATACAAACCCATTGGCTCAATTAGCAATTTTCTAACACAAAATCTTTGTGTGGCCGTAGCCCTAGGGAAAGGTATTAAACTCCCTTTACTGTCTGTTATTCTGCCTGGAAGCAgaatgtcattttgtaatttgggtgaattatCCCTTTAAATATGTTACCAAGTAAACACTTTATATTGACCTTTCTGTGAATAAAGTATTTAATTTCTGTAAATAACAAATTTCTACTTTGGGATTCTTCCTTGAATGAAAGAGAAACC

Function

NR:

description
tumor necrosis factor ligand superfamily member 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601842.2 True 2240 mRNA 0.40 4 14766176 14769160

Neighbor

gene id symbol gene type direction distance location
slc25a25b LOC106570619 coding downstream 231054 14487750 ~ 14535122 (-)
pkn3 pkn3 coding downstream 285756 14460818 ~ 14480420 (-)
LOC110523265 LOC106570595 coding downstream 327681 14434246 ~ 14438495 (-)
dync2i2 wdr34 coding downstream 332410 14429469 ~ 14433766 (-)
LOC110523260 NA coding downstream 415895 14346815 ~ 14350281 (-)
nup188 nup188 coding upstream 122819 14891979 ~ 14911591 (-)
phyhd1 phyhd1 coding upstream 145705 14914865 ~ 14925540 (-)
LOC110523281 lrrc8a coding upstream 161708 14930868 ~ 14959152 (-)
LOC110523283 LOC106569957 coding upstream 204089 14973249 ~ 14986191 (-)
LOC110524957 LOC106569957 coding upstream 218987 14988147 ~ 14995197 (-)
G370998 NA non-coding downstream 3563 14762390 ~ 14762613 (-)
G370997 NA non-coding downstream 4019 14761860 ~ 14762157 (-)
G370822 NA non-coding downstream 68915 14697025 ~ 14697261 (-)
G370819 NA non-coding downstream 74295 14691270 ~ 14691881 (-)
G370817 NA non-coding downstream 76225 14689727 ~ 14689951 (-)
G371005 NA non-coding upstream 2078 14771238 ~ 14771467 (-)
G371007 NA non-coding upstream 3338 14772498 ~ 14772814 (-)
G371012 NA non-coding upstream 9474 14778634 ~ 14778981 (-)
G371013 NA non-coding upstream 9849 14779009 ~ 14779278 (-)
G371020 NA non-coding upstream 21150 14790310 ~ 14790915 (-)
G370635 NA other downstream 337585 14427338 ~ 14428591 (-)
G370333 NA other downstream 557471 14207190 ~ 14208705 (-)
G368921 NA other downstream 2060084 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2629386 12134052 ~ 12136790 (-)
G365752 NA other downstream 5576078 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 354315 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 926932 15693396 ~ 15707607 (-)
G372122 NA other upstream 1206446 15975606 ~ 15976116 (-)
G372123 NA other upstream 1209342 15978502 ~ 15981215 (-)

Expression


Co-expression Network