LOC110523276


Basic Information

Item Value
gene id LOC110523276
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14785471 ~ 14793184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976870.1
agagagagtgagattgtGTGAGACTAAGGAGCCATGGGCGCGTGTGAGTGCAAACAACCAGGCATTCCGGACTCCTACTGGAGCCTTGAAGGTTATGGTAGATAAATGGGGTGGGGATATTCTGGAACAGGTACTTCTATGGCATAGATAGGGTGGTTTTCCTTTGACAGGGACACTAAGTGTGACGCTGTTAGACGAGATAAGACAGAGATTGGTAGAGAAGGAAGGTAAACTAGGAAAAAAGGATCAAACTGACTGGGTGAAATTCAGGAAATGGGAAAGGGAAGCTGACAAACGGAAGAAAAGACAGGACATATTTTGGGGAAAACCCTGTCAGAATATGGTAGTTCAGACTGAGGAAGGAGAAAAGAAGGGGAAAGATGAAACAGTGAGAAGGAATAGAAAGGATGATGATGACAGAGACTGTCCCCCTCCCTACTGTACTCCTCAAACTCTCTACCCAGTGTTGCCGGACCTCTCTACCCAGTGTTGCCTCCTCCTCAGGCGCCTCCTGCTGATCCGCTGGATGCAAGACCACTACAACCTGCAGCCCCACCCCCTGTCTCTCCCAACACCATGGTGATTGATCGTCTGGCACGGAGCCTGGCTGAAGTCCTGACAGGGTCTGGAGTGACTCCGGCCAGTCTCACGGGGTCCAGCAACAGCAACAGTGGGGACCACAAGGAGTCCCTCCAGGCAGAGGACAAACTGGAGCCTGGCAGACGGGGCCGCCGGCACAGACGACCCTGTACAATCCAggacagggacaggaggaggagtaTTGACATGATGAGAAGACAGGGACAGTTGTGCTAAAATCCTCAGAGCAACAAGAGCATTTGTTTTTAAAGTGTCACACCCTTCCGAGAGTAGAGCCAACAGTGGAGGCTTGCGTCAATGGGTGAAAGCGGCTCTACCCCAGCCACTGGTGGGGATCCTGCACAAACTGCAACCAGGTGACTGGGTGGTGGTGAAAGACCTGAGACGAACGCATTGGAACCAGCAGAGGTGGACTGGACCATACCAGGTGATGCTGATTACCCCCACTGCTGTTCGCGTAGCTGAGAGGTCTACTTGGATCCACGCCAATCACTGCAGGAAGGTGCCATACTGCCCACCAGACCCTGAGGATGGAGGACCAGAGACACCGGAAGTCACCGACTAGATGGGAGGATCAGGCCCAGACTCTACGCATAATGTTTCTTGCTCTGGTCTTGAGCCTTCTCATTACAGTTGCCATATGGACAGTGACTCAAGGACAACCGGTCCTGGAAAGACAACATGGTACGGACTCGACTGATAACCATTCAGTCCCACTGCGGGACCTAAATAACAGCCACTCCAGCTCGAGCCAACGGCAGGCTCAGGACAGGAGTCCAGCAAACAATAGCCGCTCCCATATCGAAAGAAGAAGAAGGTCAATGCATCCACTGGATGAGCATCACAGTAGGAATCACGAGGGAAACACTTGGTGGTCACTGCTTAACTATACAGTAAAGACTGAACTGATGTTAGGAAATACCTCCTGTTATGTATGTAGCTTGTTTCCACATTCAGCGATCTCCCCATTCTTACAATATTCAGTAGAGGTCAGCATTAAAGACACTCTATGTGCACTAGAGGTGCTCTTGTCCAATGAGAACACAGGGGGCCAACCTTCACTAGGTAGAACACTGAGGGATAAATGCATTAATGGTAATTTGTCATCAACAAAAGATTTACGGGGGGGATTTGATTGTTCACATTGGTGTAGTAGAATCATCTTAGAACCTAGATCCCGTGTACCAGAACCTATTCAAGTCCAACCCCGGCGAACCCCATTTAGGACCTGTCATTGTCACAATCCAAGCAATATTTCCATACCACAATTGAATGAATCCTATCTGGGAATGTCAACATGTGTCAATTATAGTGTTTTCCCAATAGGATGTAGCTGGAAGAAGGGAACATGCAGCTCTGGATACCCCATTAGACTGAGGGTGGGACACACCATTATTGATGCTGAAACTGACAATCTTTCTCCTCATCAATTTGGCTCGGCAACATTTACTGATCATTATTGAATGCTGTATTTTTGGTAAACTAAACAACTCCCTTGTGGTATGCATAAAACGAATTCCTCTATTCCAAGCAGGTTAAGACTAATTAAGAGGGACATCTCGCAATACAATAATGTCCCTAGTGACTCTCGACGATCCTCGAAATTGGAAAAGTTCTGGCGTGGTTTAATCCCTTGGTATGGGGCATCGGAGAATGCACATGAGTTGGATAGGCTAGGATATCATTTGGAATCCCTGGTAAATTTGACCACTGCAGGGTTTTCTATGATAAGACCAGAATTACAAGCCACTCAACTCATGGCAACACAAAATAGGGTGGCACTTGACATGTTGCTAGCACATGAAGGAGGGGTGTGTCAAATTATAGGAGATCACTGTTGTACATTTATACCCCAGGGAGATGACAATTTGACTATTGTAGTGGAACATTTGAAAGAACTTAGGGGTGTTCTCGAAAGGGAACACCAGCCTGACATCAACTGGAATCCGTTAGGATGGGTTCAGTCAGTGTTTGGTGCTTGGGCTGCGACAATTTTCCACTGGTTCATCTATGGTCTAATATTACTGATTGCTCTGTTGCTAATTATCATTTGTGTGAAGAAATTGTTTAATAAAGTGGTTGATGTTGTTCTTACTATGCCCTTGCTTGCAAATGAAGTAGGTGTAGATGAGGAATCTGAGATTGCTGGGCAACAATCAGGTGAACACAGTGAAATATTCTCACTGGACATTGTAGATAGAGAGGGTTCACTGTATATGAATGATTTCCCTGACCCATTCCCTATTCCTGACTATATCTCTGATAGTGGGGAACCCAATTCTAAGCATGAGGACTTAGAAGGATGACTGTCCTATAGGTTGTAATGATGCCTGTGTTTAGACACTGGTTCTCTTGTAATTTTGGGAGCAGTtatatgttttgttatttttattttttactcaacaAATGTATTATTCTGTATGATTAAACAGGTGCAAGTCTGTATTATGGTATAAACATTGTAAACTCAGTTTCTGAAGGGTGAATACTTACATTGAAGGGATTTGATTCTTTATTATCTTTCAATTTTGATTATGGATTTTTTAATTGTATTATATACTCTGCAACTACTGTTAGTAAGGTGCCATGTTACTATTCTGATTCTTCAGAAGGGACTTAGTCCCTTGAGAGGGGCATGTTGGGgattaatcagaattagttgggtaacatagataagatgttttattttcatgatatgcttatgagttatttctcataacaatgtattttgttgtactatagtggtggcaTTTGCaattatctgttc
>TU421521
GGGTTCAGTCAGTGTTTGGTGCTTGGGCTGCGACAATTTTCCACTGGTTCATCTATGGTCTAATATTACTGATTGCTCTGTTGCTAATTATCATTTGTGTGAAGAAATTGTTTAATAAAGTGGTTGATGTTGTTCTTACTATGCCCTTGCTTGCAAATGAAGTAGGTGTAGATGAGGAATCTGAGATTGCTGGGCAACAATCAGGTGAACACAGTGAAATATTCTCACTGGACATTGTAGATAGAGAGGGTTCACTGTATATGAATGATTTCCCTGACCCATTCCCTATTCCTGACTATATCTCTGATAGTGGGGAACCCAATTCTAAGCATGAGGACTTAGAAGGATGACTGTCCTATAGGTTGTAATGATGCCTGTGTTTAGACACTGGTTCTCTTGTAATTTTGGGAGCAGTtatatgttttgttatttttattttttactcaacaAATGTATTATTCTGTATGATTAAACAGGTGCAAGTCTGTATTATGGTATAAACATTGTAAACTCAGTTTCTGAAGGGTGAATACTTACATTGAAGGGATTTGATTCTTTATTATCTTTCAATTTTGATTATGGATTTTTTAATTGTATTATATACTCTGCAACTACTGTTAGTAAGGTGCCATGTTACTATTCTGATTCTTCAGAAGGGACTTAGTCCCTTGAGAGGGGCATGTTGGGgattaatcagaattagttgggtaacatagataagatgttttattttcatgatatgcttatgagttatttctcataacaatgtattttgttgtactatagtggtggcaTTTGCaattatctgttctctgtcaagactaagttgcttgggccgcagagaggggagaggtcaaggtgtcatcatgtgtaaacatatcttttaaaccatgtgaagggatgattaatggggaaccaattatctcttggctccactgCGTCTGTatgccagtcactccctacttttcccatcggggagaggaggatggcagtgtctggaatcattctatgctccctctttTGTTGCCCCTATCTTGACCTAGAGCCTCACTttcctctccgtgagcttgtccagaattggttgtatttagaattggttgtatctaaattaCAATTTGATATATATCATTGGGTGGGGGTAATGTCTTGGTACCATTTTGTCCCAAGGACGAGATAAgagctttgtttaggagaccaaactgaacgataatttatagccaactctgtctggctaggggatattcctctctgaagtaaagtctttctttgtgtaagttcctaagacctgtggtttgtcatgtcgtctagggagggggtggatctttgctataaaggatcccatttgccattatgttgaccactctcaacttttcattagagatactgaactgttgaaagtcaaaatgctattgcaaaagcttaattattattaaaggtgaagattaa

Function

NR:

description
syncytin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976870.1 False 3367 mRNA 0.45 2 14785471 14792549
TU421521 True 1446 lncRNA 0.38 1 14791739 14793184

Neighbor

gene id symbol gene type direction distance location
sh3glb2b sh3glb2 coding upstream 25704 14706795 ~ 14759767 (+)
pip5kl1 LOC106570018 coding upstream 91898 14684594 ~ 14693573 (+)
dpm2 NA coding upstream 101040 14678120 ~ 14684431 (+)
LOC110523269 LOC106569993 coding upstream 113462 14642773 ~ 14672009 (+)
fam102ab LOC106569988 coding upstream 155402 14547943 ~ 14630069 (+)
LOC118964542 LOC106569496 coding downstream 6223 14798616 ~ 14805526 (+)
cdk5rap2 LOC106570081 coding downstream 26760 14819309 ~ 14892194 (+)
dolk dolk coding downstream 119966 14901565 ~ 14916678 (+)
dnlz dnlz coding downstream 202699 14995248 ~ 14999436 (+)
LOC110518391 LOC106596183 coding downstream 215241 15007790 ~ 15014612 (+)
G370898 NA non-coding upstream 222 14784948 ~ 14785249 (+)
G370897 NA non-coding upstream 592 14784654 ~ 14784879 (+)
G370896 NA non-coding upstream 977 14784288 ~ 14784494 (+)
G370895 NA non-coding upstream 1553 14783631 ~ 14783918 (+)
G370891 NA non-coding upstream 5594 14779673 ~ 14779877 (+)
G370913 NA non-coding downstream 24210 14816759 ~ 14816984 (+)
G370841 NA non-coding downstream 133422 14925971 ~ 14930826 (+)
G370844 lrrc8a non-coding downstream 138369 14930918 ~ 14931459 (+)
G370414 NA other upstream 417310 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 459576 14321104 ~ 14325895 (+)
G370360 NA other upstream 526338 14255803 ~ 14259133 (+)
G369763 NA other upstream 1016175 13765247 ~ 13769296 (+)
G368440 NA other upstream 1676337 13108696 ~ 13109134 (+)
LOC110519479 LOC106596183 other downstream 255629 15047739 ~ 15054353 (+)
G371182 NA other downstream 331741 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 999010 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1427057 16218328 ~ 16220933 (+)

Expression


Co-expression Network