LOC118964542 (LOC106569496)


Basic Information

Item Value
gene id LOC118964542
gene name LOC106569496
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14798616 ~ 14805526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976536.1
ATGGACGAGTTGATAGCTGAGTTCGTCCGGGTCCAACAAGCACAACAGGCGAATGTTCTCCCCCTCACCTCCCGTCTGAACAGGTTCCGCTGCATCGTATACCCCTTCAAGCAGAAGCTGACAATCTCCACCTCCAcactgatcatcatcatcatctgggtGCTGGCTATCTCCATAATGTGTCCCTCAGGGGTCATGCTCCAGGTGACCAAGGAGCAGCGTGTCCTTATCCTACTGGGGGACGGCTACAACAACACCCGCCCCTTCTACTGGTGCCGTGAGAACTGGCCCAATCAAGAGATGAGGAAGATCTACACCACCGTCCTATTCGCTAACATCTATCTAGCCCCATTATCACTCATTGTCATCATGTACGCCCGCATCGGATTCACCCTCTTTAAGACGGCCATACCCTCCTCCGGCGGGTGCAGTGGTAGTGGCAGCAGCGGTGGGACGAAACCCAGCCTGGACAACAACCGTCAgtcgaagaagaagaagagggtgaTCAAGATGCTGTTGGTAGTAGCGCTTCTCTTCATCCTGTCATGGCTCCCGCTGTGGACGCTGATGATGCTAAGCGACTACGCCAGCCTGACGGCAAGCCAGCACCGCATCATCAACATCTACGTGTACCCGCTGGCCCACTGGCTGGCCTTCTTCAACTCCTCCGTCAACCCCATCATCTACGGCTTCTTCAATGAGAACTTCCGACGGGGGTTCCAGGCCGCATTTAAATTCCAGCTGTGCTCCGCAGTCATGGAGCGGCAGAAGACCTACTCGCATCTGGTAGCCTAA
>TU421527
ttattaaaCAACCTTGAAACCGAGCTACTCCTACTCTGTccatgtctgatctgtgtaaacgtcttgaccaaaccccctggtctgccacaagtGGTGGAGAATAAGGGCACTCTGATAACGTGGTCAGATCAGGGTTGACATTTACACAGCATCAGCATGGACGAGTTGATAGCTGAGTTCGTCCGGGTCCAACAAGCACAAC
>TU421530
GTTCCGCTGCATCGTATACCCCTTCAAGCAGAAGCTGACAATCTCCACCTCCAcactgatcatcatcatcatctgggtGCTGGCTATCTCCATAATGTGTCCCTCAGGGGTCATGCTCCAGGTGACCAAGGAGCAGCGTGTCCTTATCCTACTGGGGGACGGCTACAACAACACCCGCCCCTTCTACTGGTGCCGTGAGAACTGGCCCAATCAAGAGATGAGGAAGATCTACACCACCGTCCTATTCGCTAACATCTATCTAGCCCCATTATCACTCATTGTCATCATGTACGCCCGCATCGGATTCACCCTCTTTAAGACGGCCATACCCTCCTCCGGCGGGTGCAGTGGTAGTGGCAGCAGCGGTGGGACGAAACCCAGCCTGGACAACAACCGTCAgtcgaagaagaagaagagggtgaTCAAGATGCTGTTGGTAGTAGCGCTTCTCTTCATCCTGTCATGGCTCCCGCTGTGGACGCTGATGATGCTAAGCGACTACGCCAGCCTGACGGCAAGCCAGCACCGCATCATCAACATCTACGTGTACCCGCTGGCCCACTGGCTGGCCTTCTTCAACTCCTCCGTCAACCCCATCATCTACGGCTTCTTCAATGAGAACTTCCGACGGGGGTTCCAGGCCGCATTTAAATTCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976536.1 False 795 mRNA 0.55 3 14798772 14805526
TU421527 False 202 lncRNA 0.48 1 14798616 14798817
TU421530 True 657 TUCP 0.55 2 14804661 14805471

Neighbor

gene id symbol gene type direction distance location
LOC110523276 NA coding upstream 6223 14785471 ~ 14793184 (+)
sh3glb2b sh3glb2 coding upstream 39005 14706795 ~ 14759767 (+)
pip5kl1 LOC106570018 coding upstream 105199 14684594 ~ 14693573 (+)
dpm2 NA coding upstream 114341 14678120 ~ 14684431 (+)
LOC110523269 LOC106569993 coding upstream 126763 14642773 ~ 14672009 (+)
cdk5rap2 LOC106570081 coding downstream 13783 14819309 ~ 14892194 (+)
dolk dolk coding downstream 106989 14901565 ~ 14916678 (+)
dnlz dnlz coding downstream 189722 14995248 ~ 14999436 (+)
LOC110518391 LOC106596183 coding downstream 202264 15007790 ~ 15014612 (+)
LOC110523290 LOC106596183 coding downstream 222277 15027803 ~ 15034589 (+)
G370898 NA non-coding upstream 13523 14784948 ~ 14785249 (+)
G370897 NA non-coding upstream 13893 14784654 ~ 14784879 (+)
G370896 NA non-coding upstream 14278 14784288 ~ 14784494 (+)
G370895 NA non-coding upstream 14854 14783631 ~ 14783918 (+)
G370913 NA non-coding downstream 11233 14816759 ~ 14816984 (+)
G370841 NA non-coding downstream 120445 14925971 ~ 14930826 (+)
G370844 lrrc8a non-coding downstream 125392 14930918 ~ 14931459 (+)
G370852 NA non-coding downstream 134446 14939972 ~ 14940348 (+)
G370414 NA other upstream 430611 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 472877 14321104 ~ 14325895 (+)
G370360 NA other upstream 539639 14255803 ~ 14259133 (+)
G369763 NA other upstream 1029476 13765247 ~ 13769296 (+)
G368440 NA other upstream 1689638 13108696 ~ 13109134 (+)
LOC110519479 LOC106596183 other downstream 242652 15047739 ~ 15054353 (+)
G371182 NA other downstream 318764 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 986033 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1414080 16218328 ~ 16220933 (+)
G372373 NA other downstream 1930116 16735642 ~ 16738500 (+)
LOC118964542 LOC106569496 other downstream 5844 14798616 ~ 14805526 (+)

Expression


Co-expression Network