nup188 (nup188)


Basic Information

Item Value
gene id nup188
gene name nup188
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14891979 ~ 14911591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976881.1
AATAGACTTACCCGGTAAATACTGCACATATCAGGATAAATGAGTAAAGCGATATCTGATCTTTCGACTATTATATTCTGCCCAATCAGCTGGCGTTCCTCATACCCAGTAGGAGGTGGCCATATTGACATCCATGTCACGTGGTACATGAAACCTTTATTTATGGTGCACGATGTGCGATATTTTGTTATTATATATTTAATTTCATGTGAATGGTAAATGTTTGGTATTTATATACATTTAAAATCATAACTATAACCATAACATCTACAGGTCACGTGATGGGGTCCATGTCGCAGACAAGTTACGTCACGTTGCAGGGAGAAGATGGCGGACTCGGAGATGTATGTGAGGAGCAGCCGAGAGTTATGGACTATCTTACTGGGGAGATCTGCATTGAGGGAACCGGCTCAAATAGAGGAAGAACTAGATCGAAATTGGGAGCGATTACTTCAAGGGCTGTGTTACTACAAAACACCCAGttcaTCAGCGGCGGAAAAACTGAAAGCGGACAAAGATGTGGCCCAACCATTGAAGGATTTTGGTCTGAGGATCAGTAAACTGTTGGGTCTGGATCAACAGCAGAGTGTACAGATTTTACAATGTTACCTTCAAGAAGATTACAGAGGGACCCGCAACACTCTGAAGGATGTTCTGCAGGATGAGAGACCGAGCCAAGCCCTACTTCTGAAGaTCGCTGACTATTACTACGAGGAGCGTGTGTGTCATCTGCGATGCGTCCTCCTCCTGCTGACGTACTTTCAGGATGAGAGACACCCTTACAGGGTGGAGTACTCCAACTGTGTGAACAAGCTGGAGAAGGACCTGGTCAATAACTACCAGAAGCAGTTTGAGACCCTGTTCAAAGCTGAATCCCCGACATGGGAGACGCATGGCAACCTCATGACGGAGAGGCAGGTGTCCCGCTGGTTCCTGCAGTGTCTGAGGGAGCAGTCCCTGCTGCTGGAGATTCTGTTCCTGTACTATGCCTACTTTGAGATGGGTCCCGGAGACCTGCTCAGCTTCACCAAGATGTTCAAGGAACAGGGCTTCGGCCTTCGCCAAACCAACAGACACCTGGTAGACAAGAGCATGGATGCCCTGGTTGACCGCATCGGGTACTTCAGCTGTCTGATCCTGGTGGAAGGCATGGACATAGACTTCCTCCACAAGTGTGCCCTAGAGGACCGCACGGAGCAGCACCAGTTCTCCAACACCCCTGCCATCAGCAAGGAGATGGACCAGATGCTGCTGACGTTTGGTGACATCCCTCACCACGGGCCAGTGCTGCTGGCCTGGGTCCTGCTGAGACACACCTTGAGCCCAGATGAGTCCAGCCCCGTCATCAGACGCATCGGGAACACCTCCCTACAACTGGGGGTGTTTCAGTACCTCACCACCATGCTGCAGGGTCTGGGAGGCACTGGGAATAATTGCACAGCCAGTACAGCCAGGATGTGTATCTACGGCCTCCTCTCCTTTGTCATTACCTCCTTTGAAGAGGAGACGCTGGGCAGCCAACAGCATCTAATAAATGCAGCGTGTGAAGTCCTCTCTGCGCCCAGTCTGGCTGAGCTCTTCTGGGAAACGAAGCCCACTATGGGATTGGGAATGATCCTGGATAGCGCAATGGGAATGTTCCCACACAAGACTGGTATGCTGTTGCAGCTCCTTACTGCGCTCCTGTCAGATAAGTCCACTGCAAAGAAGgtgTACATTTTCCTGGACAAGATGTCGTTCTACACCGAGGTCTACAAAACAAAGCCCAATGATGTCATCTCTAGAGACGACGAGACACTGTGGAGGAGACAAGCACCAAAACTCCTCTACCCTCTCGGCCTGGGCCAGACTAACCTGCGGATGCCTCAGGGTGTGCTCGGTCAGGTGGCTGTGGGGGAGCAGGGCTACGTGGTGCGCTGGGACTACTCCTACAGTGCCTGGATCCTGTTCACCTGTGAGATAGAGATGCTGCTCCACGTTGTCTCTACTGCAGATGTGATCTTGCACTGTGAGCGTGTGAAGCCCATCCTGGACCTGGTCCATAAGATGATCAGCACAGACTGGACcgtgtctgactgtctgctgcCCCTCACCTCACGCATCTACATGTTACTGCAGAGGTTGACGTCAGTCATCAACCCTCCAGTGGATGTGATAGCGTCCTGTGCGAACTGCCTCATCGTCCTGGCTGCTAGGATGCCTGGCAAGGTTTGGTCCAGCTTGCACCACACTGGTTTTCTGCCCTTCGCCTCCTCCCCTCTGACCAATATGGCACAGTCCATCAGTGCTGAGGGGATGAAGGCAGGTAACTACGGCAACCTGCTGGTCCTGATTGAGCAGCCCAGAGGGGAGTACGCTGTGACCATCGCCTTCCTGCGCCTCGTCACCACCCTGGTCAAgGGCCAGCTGGGCAGCACCCAGGACAAGGGCCTCATCCCCTGTGTGCTGCTGGTGCTGAAGGAGATGCTGCCCACCTACCACAAGTGGCGCTACAACACCCACGGAGTCAGAGAGAGGATCGGTTGTCTGATCCTGGAGTTGGTCCATGCCATCCTGAACCTCAGTCCAGAGGGAGAGGCTAGTGGCAGCACGCCAACCCTCCAGTCTCTGTGTATCTACAGTCTGGCTAACACCGAGGCTGGCCAGGCGGTGGTTAATATCATGGGGGTGGGAGTGGACACCATAGACATGGTCCTGGCTGCTCAGCCCAGCAGTGGTGGCTCGGAGGGCCCAGGTCAGATCCTTATCCAGACGGTCAAGCTGGCCTTCTCCGTCACCAACAACGTGATCCGCCTCAAGCCACCGTCGAGCGCCGTTTCGCCCCTGGAGCAGGCGCTGACGCAGCACGGTGGCCACGGCAGCAACCTAATTGCCGTGCTTGCCAAGTACATCTACCACAAACACGACCCGGCCCTACCGCGCCTCGCCATCCAGCTGCTCAAGAGGCTCGCCACGGTGGCTCCCATGTCGGTGTACGCCTGCCTGGGCGGTGACGCGGCTGCCATCAGGGATGCCTTTCTGACTCGGCTACAGAGCAGGACGGAGGACATGAGGATCAAGGTGATGATCCTGGAGTTCCTCACCGTGGCCGTGGAGACCCAGCCAGGCCTCATCGAGCTCTTCCTCAACCTGGAGGTCAAGGACGGCGCAGAGGGGTCAAAGgaGTTTCTGCTGGGTGAGTGGAGCTGTCTGCAGGTTGTGTTGGACCTGATTGACTCCAGGCAGCAGGGGAAGTATTGGTGTCCCCCCCTGCTGCACCGCGCCGCCCTGGCCTTCCTCCACGCCCTGTGGCAGGACCGACGGGATAGCGCAATCTCTGTCCTACGCACCAAAGAGAGGTTTTGGGAAAACCTGACCACGCCTTTGTTTGGAACCCTTCCCGCCCCCTCAGACATCACTGAGCCTTGTGTTCTGGAGACCTGTGCCTTCGTCATGAAAATCATCGGCCTTGAGATCTACTATGTAGTCAGTGGCTCTCTGGAGCGCTCTCTGAAGGATGCACTGCAGAAGTTCTCCAGCGGGCGGCGCTACGAGTACTGGTCCCAGTATGTTAAGTCCCTGGTGGTCCATGTGGCAGAGACGGAGGAGGAAGAGGGCGTGCACTCGTTCTCCGAGACCCAGATGGTCATCTCAGCCTGGCGGATGCTGCTCATCCTCTCCACCAGTCATTCGGATGTGATGCAGTTAAAGGAGGACTCTGCCAGACTTAAGCTCTTCATGGACGTGCTGGATGGGACCAAAGCTGCTttgctGGTGCCCATGTCTGTGCCCTGTCTACGTCTGGGATCCATGATGGCTACTCTTCTGCTGATCCTGCTTAAACAGTGGagaagTGTGGTGGCCACGGCCCCTGACGTACTGGCCCCCCTTTCTCTGATCCTGGAGAGTGTCCTGCAGGCCGACCAGCAGCTGATGGAGAGTACCAAGGCCAAGGTGTTCTCTGCCCTCATCTCTGCACTTCAGATACAGGGACTCAACGGTGAGGAAATCTCCCAACTGCCCCAGctgctgctctgtgtgtgtgagacggtGCAGGACGAGGCGCTGGCACTGATTGACAGCACTCGTCACGCGGCTCAGGTGAGGGACATCCCGGATGACAAAGACAGCATGGAGACTGACGCCGTCCGCAGCTTCCAGAAGGACCAGAGAGACGGGgtgtgtgtgctgGCCTTACACCTGGCCAAGGAGCTGTGTCGTGCCGACGAGGACGGGGAACACTGGGTTCTAGTGATGAGGAAGATTCCTGCTCTCCACTCTATTCTCAGCGCTCTAGAACTCAGCCTGCGCTCCAAACAGAACCTCTACTTTACCGAGGCTGCCCTGCACCTGCTGCTCACGCTAGCCCGCACACCACAGggTGCAGCAGCAGTAGCCGGGGCCGGCGTCATCCAGAgtatctgtctccctctgctcAGTGTCTACGAAGTGCCCTCTAACGGAGCCTCACAGGGTTTCTCCCGTAAGTCCCAGGATGCTCCCTGCTGGCCGGGGGTGTACCGCCTCTCTATGTCCCTCATGGAGATCTTGCTCAAGACGCTGCGCTACAACTTCATCAACGAGGCCCTCGACTTTGTCGGAGTGCACCAGGAACGCAtactgcagTGCCTGAATGCGGTGCGGACGGTCCAGAGTCTGGTGTGTCTGGATGAGGCTGACCACACAGTGGGCTTCCTGCTGCAGCTGTCCAGCTTCTGTAAGGAGTGGCAGTTCCATCTGCCCCATCTGCTCCGAGATGTACAGATCAATCTGTGTTACCTGTGCCAGACGTGCACCTACCTCCTCCACAGCAGGAACATGCTTCATCACTACCTCCAGGCTAAGAATGGGGAGGCGCTGCCCTCCGGCCCCCGTGCCCAGAGAGATCCTCAGACGCCCTCCAAAGCTGCAGTCGAAGGAGGGGgcggggagagggaggaggcggAGCAGAAGGCCCTGCTGGCAGTGCAATGCAGCCTGCTGAAGATCCTCAGTAAGACTCTGGCCACGCTGCAGCACTTCACCCCTGACTGCTGTCAGATAATACTGGACCAGTGTATGGACCTGGCAGAGTACAGGACCTTGTTTGTGCTGAGCTTCACCACCTCGGCCTTTGACGCTGACGTGGCGCCCTCTTTTGGAACCCTACTGGCAACCATCAACGTGGCCCTAAGCATGCTGGGAGAGGTAGAGAAGAAGGAGCCAGCCTCTCTGAGTGTGGCCTCCCTGGCCTCGTCAGAGGAAACCCAAGCCCTCAagtctctgctgATGTTCACCATGGAGAACTGTTTCTACGTGCTCATCTCCCAGGCCGTCCGCTGTCTGAAGGACCCCAGCATCGCCcccagagacaaacagagactcAAACAGGAGCTTGGCTCTGAACTGAGCACCCTCCTCTCCAGCCTGTCCCGTCACTTCCGCCGTGGCGCCCCCTCGTCCCCGGCCAGCAGCCTGCTGCCATCTCCCCAGCCCCCAGGCGCTAAGGCCAGCCACGAGGGTCAGGAGCCTTTCATCCAGCTGGTGCAGGCCTTCGTACGCCACATACAGAGGTAGACCCACCACGTGGAGTGTACGACTAGGGCCAGGAGGTTTTCCTGTTAAGAAGTTATGGGCCTGAAAAACTCTTGTCACACATGGCTATCGTATTCTCTTCTGAATTATACTTTTCACGGTGCAACAGTGTCGGTTCATTCTTTTCAGTTGAAGTGATATGTCAAGCCAGTCACCTTTCAAATCTGCTGTACAAAGTCCTGACGTGCCAGATTCTAACAATCGGGCTTTGGGTGTTCAGAAAATGCTCCCATACACATGGGTCATATGTCCAATTTGTCATGCTTATAGCCTACTATACCTCAGTGGGAATGTCAAAACAGAGGATACAGCTGCTTACAAGGGCTAGCTAAAAGAAAGTCCATTgagagactagacatttacctcTAAAAGAATCAGTAGTAACAGATCTTGGTGCTATTGAACATCTGTCTTGTTGACAGTGTCCAGTCTTTCCACCGGCCTAGTTTTATAGGCCATTTCTGACAACAGACCTTTTGGTATCAAAAAATCAAACCCATATCAAATTGTGACGCCACATTTAATCAATTTATACATTTGTAATGAGCTGCCTAGTTACTTTAGCTGCTGTTTTCTATATCATTTTGACTTTTCTAATGCTTGGACTGAGGGATTTTTTTCTCCTTTTAAAAATGTTGCTTGGATTTTCTGATTTATGTGCATCACGTACTGCTACATTAAAACAGGTTTGCTAATAAAATACCTAGTAGAACATGA

Function

symbol description
nup188 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore inner ring. Orthologous to human NUP188 (nucleoporin 188).

NR:

description
nucleoporin NUP188 homolog isoform X1

GO: NA

KEGG:

id description
K14311 NUP188; nuclear pore complex protein Nup188

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976881.1 True 6270 mRNA 0.54 42 14891979 14911591

Neighbor

gene id symbol gene type direction distance location
LOC110523275 NA coding downstream 122819 14766176 ~ 14769160 (-)
slc25a25b LOC106570619 coding downstream 356857 14487750 ~ 14535122 (-)
pkn3 pkn3 coding downstream 411559 14460818 ~ 14480420 (-)
LOC110523265 LOC106570595 coding downstream 453484 14434246 ~ 14438495 (-)
dync2i2 wdr34 coding downstream 458213 14429469 ~ 14433766 (-)
phyhd1 phyhd1 coding upstream 3274 14914865 ~ 14925540 (-)
LOC110523281 lrrc8a coding upstream 19277 14930868 ~ 14959152 (-)
LOC110523283 LOC106569957 coding upstream 61658 14973249 ~ 14986191 (-)
LOC110524957 LOC106569957 coding upstream 76556 14988147 ~ 14995197 (-)
LOC110523296 LOC106569911 coding upstream 105165 15016756 ~ 15023815 (-)
G371069 NA non-coding downstream 22930 14865745 ~ 14869049 (-)
G371060 NA non-coding downstream 40904 14850492 ~ 14851075 (-)
G371036 NA non-coding downstream 74342 14817393 ~ 14817637 (-)
G371035 NA non-coding downstream 75509 14816230 ~ 14816470 (-)
G371020 NA non-coding downstream 101064 14790310 ~ 14790915 (-)
G371043 NA non-coding upstream 14379 14925970 ~ 14929255 (-)
G371108 NA non-coding upstream 54544 14966135 ~ 14966439 (-)
G371109 NA non-coding upstream 56231 14967822 ~ 14968150 (-)
G371110 NA non-coding upstream 58985 14970576 ~ 14970831 (-)
G371251 NA non-coding upstream 64729 14976320 ~ 14991459 (-)
G370635 NA other downstream 463388 14427338 ~ 14428591 (-)
G370333 NA other downstream 683274 14207190 ~ 14208705 (-)
G368921 NA other downstream 2185887 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2755189 12134052 ~ 12136790 (-)
G365752 NA other downstream 5701881 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 211884 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 784501 15693396 ~ 15707607 (-)
G372122 NA other upstream 1064015 15975606 ~ 15976116 (-)
G372123 NA other upstream 1066911 15978502 ~ 15981215 (-)

Expression


Co-expression Network