phyhd1 (phyhd1)


Basic Information

Item Value
gene id phyhd1
gene name phyhd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14914865 ~ 14925540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601858.2
ccataacaatGGCGTTTGGGGATGAATTGCAGATACAGTTAGGCCTAGGTCCCGAGCAGCAGCATCGAAATGGTTAACATCGAAAATCCTATTACTTCACTACTGTTACATTTTAATCGAGTTAGACGTCTACATCACGTGGTACTTCTAAACAGTTTAGACCAGGAGAACCCGGTTAAATTGGATACGGAGCTTCATTTTGAGTTTTCAGCATGGACTTTCTAACAGATCAAGATGCGAAAAAGTACCAGGAGGACGGGTACCTGATCCTGGACGGGCTCCTCAGCCCGGCGGAGTGTGATGAGCTCCGGCTGAGGATGGGAGAGATCGTGGACCGGATGGACGTTCCAGAACATTGTCGGATCCAGTTCTCCACTAATCACGACGAGCAGTTGAAAACACAGGGAAACGCTGACTACTTCATCACCAGTGGAGATAAGATCCGCTTCTTCTTTGAGAAAGGAGTTTTTGATGATAAAGGAGATTTCACCGTGCCAAAAGAACGCTCTCTCAACAAAATTGGACATGCACTCCATGCCTATGAGCCTTTATACAAAACTGCCACTCATTCACCCAAGATTCAGGGTATAGCCAAGAAGCTTGGTCTGAAGAGTCCTGTGATTTTGCAAAGCATGTACATTTTCAAGCAACCAGGGATCGGTGGAGAAGTGACGCCCCACCAAGATGCTACATTCCTCCACACGGAGCCCCTGGGCAGGGTGATGGGCGTGTGGATCGCCCTGGAGGATGCCACCCTGGACAATGGCTGCTTGTGGTTCATCCCCGGCTCACACAACAaTGGTATCACCCGACGTATGGTTCGGACCCCTGAAGGCACCTATCCCCTGACAGACTTTGTTGGGAGAGAGGCAACCTATGACGATAAGCTGTTCATACCTGCACCTGTCAAAAAAGGTGGGGTGGTGCTGATCGAGGGAAAGGTTGTCCATAAAAGTGAGCAGAACGCGTCAGAAAAATCGCGCCATGTCTACACTTTCCACATCATGGAGTCTCAGGAGACAAAATGGAACCCTGAGAACTGGTTACAGCCCACAGAGGACCTTCCTTTCCCTGCCCTGTACACCAAGTAATCCTGGTTCACTATGTCTGCCACTACACTGAATGGATGGACAGAGGAAGACACCTTCACTTGTCCCTAGAGAAGATTAGTGAAAACaattatcagaattgggctgcctgtgtgtgtgcacgtgcttcAGGGTATTAGTCAGAAGACATGTAGTTAGGCTTTATAAGATTAGTGAACATTTAGTAGTAGCACACTGAAGTGAGCAATGAaccaatgtgtttgtgtgtagaacAGTTAATTCAAATCATGTGTTTTAGCAGTTAATCTCATTCAGATTCCCTTAAGTATCCAATTTATCTTCTCTCTGATCATAAACAGGTTTGCCTCATCAAGGTATGTCTTCCTGATAGATCAATGTGAGACATTATGCCCACAAATATACCCTGCTATCTCTGGATGAAAAACAGACAAACATCTAGCATAAAAGGCCTTTAATGATGCAACAATCTGCCATGCAATACAAGTGTTTCCTGTCAAAGGCAAGAAAAAGCTCATAAATTATCATTACGGATTATTGGAAAAGGCAACAAACAAAATACTACTTATTTATTACAGATTCATCAAATACTGTCAGTTCCATGCTGAGAAAACAAGTAAACAAACATTATAAAAAGAGAAGGTCTCTCCAGAATGCACAGTAAACTGGAGGAAGGGGAATTGGAGCCTGGCTGTACCAGACTCAATGTGCACTCTATGGTTTGAGTGCCAATTTCGGTCTAGTTTAACTAGGCTATGGGAACGCAGAGGCTCCTatggaccacaggaggttggtggtaccttatttggggaggatgggcttctggtaatggctggagcggattggtatcaaatacatggtctccatgtgtttgatgccattacattcgctccattccagacattgagtcatcctcccctcagcagcctccactgctatgGACAGTTGTAGTTTAACGTGACAtgtctgacttagaggcgtttacacaggcagatcAATTCTGATAAcaagctgatctgattggtcaagactaattagtggaaaaatatcagaagaattgggctgcctgtctaaacacagccaGATAGCGAAAGATACATCTACAGATAACTAGTATAGCATCTCAATGTTAGCTGATTTAATTTTAAAAAGGTACATGTAGTTACTTTCATTACACCATAAATACATACCTTCCTGCAGCTTATAAACACTATCAGGAAATGAATTTAATCACTTCAAAATTTAACAAAACATGAATTCAATATGTTCATGACATGTGGCCCTGTTATATCATCTCTACAATTGATTTCCAATATACAAATCAGATTTTGGGGGGGGTGAACGTTAAGGAAATTCATGTATATTTTGGAGAGGGTCCTATCAAAACACCCGGATAAAAGACAAAGGATTCATACAAAACTGAAAAGACACTGTAGGGTAATTTCTGTATACAAGTTACAGTAAAGGATTTCAAAATGTTTAAATGTCATGCTATAGTGTATAAACTGCTGCCATATTGAAGAATCAACCAGTCTACTTCAACACAAACCATGCTGTCAGCTAGAGTACCTACAGTACTAGGTAATGTGTGATACAAAATATACTTCTTTAAGGCAAATATGTCCCGCAATCAGTCCGTAATATTGCCACAACAAGAAATGCAAATATATTATAGTCAGATGAAAttgtaacaacaaaaaaatgctctgaaaaacaaatgatcaaaTGATGTTCTTCAAAAGGCTGTACAAAGGTAGCTTTCCTTTAGCAAAAAAAAGAAGCCCATCACAATTTGTTAAAACGTGCCATTAACCAGTGTCTGCCATGACTGCTGATCAGGGCAGGGACACTTAATTCTGGCTAAAATACATTTTGTCCAATGTACTGAACTCCATCTCCTGTTGTATAATTCAGTAGTTTGGGATTTCAGCGTGTTAGTGACTCAGGGACATTCATCCTCTGTCCCTCGAATCCCCCACCTCCATCAAGACAGAGCTGGGTCATattcactaataataataataataataataataatgtgggtGCTTCTATTTGTCCTATTTTACACATGTACACGTGTTAAtacgcatgtgtgaattggaaatgtattattttcttgcatatcccaactctgaGACATCTTTGCagtggggtcatggccagggtcagccattatcaacagtggttaggcaccaaacagaataaaacagactgaaacaaggCGGGACTACCCCAAACTTGTCCAATGAGGAA
>XM_021601857.2
acccataacaatGGCGTTTGGGGATGAATTGCAGATACAGTTAGGCCTAGGTCCCGAGCAGCAGCATCGAAATGGTTAACATCGAAAATCCTATTACTTCACTACTGTTACATTTTAATCGAGTTAGACGTCTACATCACGTGGTACTTCTAAACAGTTTAGACCAGGAGAACCCGGTTAAATTGGATACGGAGCTTCATTTTGAGTTTTCAGCATGGACTTTCTAACAGATCAAGATGCGAAAAAGTACCAGGAGGACGGGTACCTGATCCTGGACGGGCTCCTCAGCCCGGCGGAGTGTGATGAGCTCCGGCTGAGGATGGGAGAGATCGTGGACCGGATGGACGTTCCAGAACATTGTCGGATCCAGTTCTCCACTAATCACGACGAGCAGTTGAAAACACAGATGCAGGGAAACGCTGACTACTTCATCACCAGTGGAGATAAGATCCGCTTCTTCTTTGAGAAAGGAGTTTTTGATGATAAAGGAGATTTCACCGTGCCAAAAGAACGCTCTCTCAACAAAATTGGACATGCACTCCATGCCTATGAGCCTTTATACAAAACTGCCACTCATTCACCCAAGATTCAGGGTATAGCCAAGAAGCTTGGTCTGAAGAGTCCTGTGATTTTGCAAAGCATGTACATTTTCAAGCAACCAGGGATCGGTGGAGAAGTGACGCCCCACCAAGATGCTACATTCCTCCACACGGAGCCCCTGGGCAGGGTGATGGGCGTGTGGATCGCCCTGGAGGATGCCACCCTGGACAATGGCTGCTTGTGGTTCATCCCCGGCTCACACAACAaTGGTATCACCCGACGTATGGTTCGGACCCCTGAAGGCACCTATCCCCTGACAGACTTTGTTGGGAGAGAGGCAACCTATGACGATAAGCTGTTCATACCTGCACCTGTCAAAAAAGGTGGGGTGGTGCTGATCGAGGGAAAGGTTGTCCATAAAAGTGAGCAGAACGCGTCAGAAAAATCGCGCCATGTCTACACTTTCCACATCATGGAGTCTCAGGAGACAAAATGGAACCCTGAGAACTGGTTACAGCCCACAGAGGACCTTCCTTTCCCTGCCCTGTACACCAAGTAATCCTGGTTCACTATGTCTGCCACTACACTGAATGGATGGACAGAGGAAGACACCTTCACTTGTCCCTAGAGAAGATTAGTGAAAACaattatcagaattgggctgcctgtgtgtgtgcacgtgcttcAGGGTATTAGTCAGAAGACATGTAGTTAGGCTTTATAAGATTAGTGAACATTTAGTAGTAGCACACTGAAGTGAGCAATGAaccaatgtgtttgtgtgtagaacAGTTAATTCAAATCATGTGTTTTAGCAGTTAATCTCATTCAGATTCCCTTAAGTATCCAATTTATCTTCTCTCTGATCATAAACAGGTTTGCCTCATCAAGGTATGTCTTCCTGATAGATCAATGTGAGACATTATGCCCACAAATATACCCTGCTATCTCTGGATGAAAAACAGACAAACATCTAGCATAAAAGGCCTTTAATGATGCAACAATCTGCCATGCAATACAAGTGTTTCCTGTCAAAGGCAAGAAAAAGCTCATAAATTATCATTACGGATTATTGGAAAAGGCAACAAACAAAATACTACTTATTTATTACAGATTCATCAAATACTGTCAGTTCCATGCTGAGAAAACAAGTAAACAAACATTATAAAAAGAGAAGGTCTCTCCAGAATGCACAGTAAACTGGAGGAAGGGGAATTGGAGCCTGGCTGTACCAGACTCAATGTGCACTCTATGGTTTGAGTGCCAATTTCGGTCTAGTTTAACTAGGCTATGGGAACGCAGAGGCTCCTatggaccacaggaggttggtggtaccttatttggggaggatgggcttctggtaatggctggagcggattggtatcaaatacatggtctccatgtgtttgatgccattacattcgctccattccagacattgagtcatcctcccctcagcagcctccactgctatgGACAGTTGTAGTTTAACGTGACAtgtctgacttagaggcgtttacacaggcagatcAATTCTGATAAcaagctgatctgattggtcaagactaattagtggaaaaatatcagaagaattgggctgcctgtctaaacacagccaGATAGCGAAAGATACATCTACAGATAACTAGTATAGCATCTCAATGTTAGCTGATTTAATTTTAAAAAGGTACATGTAGTTACTTTCATTACACCATAAATACATACCTTCCTGCAGCTTATAAACACTATCAGGAAATGAATTTAATCACTTCAAAATTTAACAAAACATGAATTCAATATGTTCATGACATGTGGCCCTGTTATATCATCTCTACAATTGATTTCCAATATACAAATCAGATTTTGGGGGGGGTGAACGTTAAGGAAATTCATGTATATTTTGGAGAGGGTCCTATCAAAACACCCGGATAAAAGACAAAGGATTCATACAAAACTGAAAAGACACTGTAGGGTAATTTCTGTATACAAGTTACAGTAAAGGATTTCAAAATGTTTAAATGTCATGCTATAGTGTATAAACTGCTGCCATATTGAAGAATCAACCAGTCTACTTCAACACAAACCATGCTGTCAGCTAGAGTACCTACAGTACTAGGTAATGTGTGATACAAAATATACTTCTTTAAGGCAAATATGTCCCGCAATCAGTCCGTAATATTGCCACAACAAGAAATGCAAATATATTATAGTCAGATGAAAttgtaacaacaaaaaaatgctctgaaaaacaaatgatcaaaTGATGTTCTTCAAAAGGCTGTACAAAGGTAGCTTTCCTTTAGCAAAAAAAAGAAGCCCATCACAATTTGTTAAAACGTGCCATTAACCAGTGTCTGCCATGACTGCTGATCAGGGCAGGGACACTTAATTCTGGCTAAAATACATTTTGTCCAATGTACTGAACTCCATCTCCTGTTGTATAATTCAGTAGTTTGGGATTTCAGCGTGTTAGTGACTCAGGGACATTCATCCTCTGTCCCTCGAATCCCCCACCTCCATCAAGACAGAGCTGGGTCATattcactaataataataataataataataataatgtgggtGCTTCTATTTGTCCTATTTTACACATGTACACGTGTTAAtacgcatgtgtgaattggaaatgtattattttcttgcatatcccaactctgaGACATCTTTGCagtggggtcatggccagggtcagccattatcaacagtggttaggcaccaaacagaataaaacagactgaaacaaggCGGGACTACCCCAAACTTGTCCAATGAGGAA

Function

symbol description
phyhd1 Predicted to enable dioxygenase activity and metal ion binding activity. Orthologous to human PHYHD1 (phytanoyl-CoA dioxygenase domain containing 1).

NR:

description
phytanoyl-CoA dioxygenase domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601858.2 False 3320 mRNA 0.42 11 14914865 14925538
XM_021601857.2 True 3328 mRNA 0.42 12 14914865 14925540

Neighbor

gene id symbol gene type direction distance location
nup188 nup188 coding downstream 3274 14891979 ~ 14911591 (-)
LOC110523275 NA coding downstream 145705 14766176 ~ 14769160 (-)
slc25a25b LOC106570619 coding downstream 379743 14487750 ~ 14535122 (-)
pkn3 pkn3 coding downstream 434445 14460818 ~ 14480420 (-)
LOC110523265 LOC106570595 coding downstream 476370 14434246 ~ 14438495 (-)
LOC110523281 lrrc8a coding upstream 5328 14930868 ~ 14959152 (-)
LOC110523283 LOC106569957 coding upstream 47709 14973249 ~ 14986191 (-)
LOC110524957 LOC106569957 coding upstream 62607 14988147 ~ 14995197 (-)
LOC110523296 LOC106569911 coding upstream 91216 15016756 ~ 15023815 (-)
LOC110516435 LOC106569911 coding upstream 111055 15036595 ~ 15043478 (-)
G371069 NA non-coding downstream 45816 14865745 ~ 14869049 (-)
G371060 NA non-coding downstream 63790 14850492 ~ 14851075 (-)
G371036 NA non-coding downstream 97228 14817393 ~ 14817637 (-)
G371035 NA non-coding downstream 98395 14816230 ~ 14816470 (-)
G371020 NA non-coding downstream 123950 14790310 ~ 14790915 (-)
G371043 NA non-coding upstream 430 14925970 ~ 14929255 (-)
G371108 NA non-coding upstream 40595 14966135 ~ 14966439 (-)
G371109 NA non-coding upstream 42282 14967822 ~ 14968150 (-)
G371110 NA non-coding upstream 45036 14970576 ~ 14970831 (-)
G371251 NA non-coding upstream 50780 14976320 ~ 14991459 (-)
G370635 NA other downstream 486274 14427338 ~ 14428591 (-)
G370333 NA other downstream 706160 14207190 ~ 14208705 (-)
G368921 NA other downstream 2208773 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2778075 12134052 ~ 12136790 (-)
G365752 NA other downstream 5724767 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 197935 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 770552 15693396 ~ 15707607 (-)
G372122 NA other upstream 1050066 15975606 ~ 15976116 (-)
G372123 NA other upstream 1052962 15978502 ~ 15981215 (-)

Expression


Co-expression Network