LOC110523281 (lrrc8a)


Basic Information

Item Value
gene id LOC110523281
gene name lrrc8a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14930868 ~ 14959152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601859.2
ACCACTCAAACGAGCCCAGTGGAAACCCTCTGGTACCATGTTATTATGATCCAACTTCCTGGGTGGAGACAGCTGCCTCTCCCGAGTATTTTCTGTTGCTGCGAATGGTGTGTGAACGTAAATATGTCCATTCTGTGAAACATTAAGAAATGTATCACTTATGTGCGGAAGAGGCGAAAGACCGTTATTGTAACAAATTAGGTAAACCATCATGATCCCCATCACAGAGCTCCGGTACTTTGTTGACACCCAGCCGGCGTACCGCATCCTGAAGCCATGGTGGGACGTCTTCACAGACTACATCTCCATCGTCATGCTCATGATCGCCGTGTTCGGGGGCACACTGCAGGTCACCCAGGACAAGATGATTTGCCTGCCCTGCAAGTGGGTGGTCAACAAGTCCTGTGAGTACCTCAATGTGAGCTTCCCAGACCCATTTGCCTCTGAGCCCAAAGGCATCAAGTATGAACTCGATCGGCACCAGTACAACTACATTGACGCGGTCTGCTACGAGAACAAGCTGCACTGGTTCGCCAAGTACTTCCCCTACCTGGTGCTACTGCACACCCTCATCTTCCTGGCCTGCAGTAATTTCTGGTTCAAGTTCCCCCGGACTAGCTCCAAATTAGAGCACTTTGTGTCCATCCTGCTCAAGTGTTTTGACTCGCCCTGGACCACCAGGGCTCTGTCCGAGACGGTAGTGGAGGAAAGCGACCCCAAGCCCCTGGGGAAGATGAACGGTTTGGTGGACAAGAAGGCATCTTGTGTCAGCGAGGACGTGGAGGCCAGCATTCCTATGCTCCAAAGGACTAGGTCCCGCATCGAACAGGGCATAGTGGACCGCTCCGACACCGGTGTCCTGGACAAGAAGGAAGGCGAGCAGGCCAAAGCTCTGTTTGAGAAGGTGAAGAAGTTCCGGATGCACGTTGAAGAAGGGGACATCGTTTACCGGCTGTACATCCGCCAGACCATCATCAAAGTCGTCAAGTTCATCCTGATCATCTGCTACACGGCCTACTATGTGCATTACATCAAGTTCAGTGTGATCTGCAAGGTGGACATTGAGAAGCTGACAGGCTATAGGATGTACCACTGTGCTCACCCTCTGGCCACCCTCTTCAAGATCCTGGCCTGTTTCTATATCAGCCTGGTGGGGATTTACGGTCTCATCTGCATGTACACCCTCTGCTGGATGCTCAGCCGTTCCCTCAAGCGCTACTCTTTTGAGTCGATCCGTGAGGAGAGCCATTACAGCGACATACCCGATGTGAAGAATGACTTTGCCTTCATGCTGCACATGATTGACCAGTATGACCCGCTCTACTCCAAACGGTTTGCCGTTTTCCTATCGGAGGTGAGTGAGAACAAACTGCGTCAGCTGAACCTCAACAACGAGTGGACGCTGGACAAGCTGAGGCAACGCATCACCAAGAACTCCCAGGAGAAACTGGAGCTGCACCTGTTCATGCTTAGCGGAATCCCTGACACAGTGTTTGACCTCCTAGAACTGGAGGTGCTCAAGCTGGAGCTCATCCCTGATGTCACTATCCCCCCCATCATTGCCCAGCTGGTCAGCCTGAGAGAGATGTGGCTCTACCACACACCAGCCAAAATCGAGGCCCCAGCTTTGGCCTTCCTGAGGGAGAACCTGAAGTCCCTCCACATCAAGTTCACAGACATCAAGGAGATCCCTCTGTGGATCTACAGCCTGAAGAACCTGAGTGAGCTGCACCTCACAGGGAACCTGAGCGCAGAGAACAACCGCTTCATCGTAATCGACGGGCTACGGGAGCTCAAGAGGCTCAAAGTGCTCCGTCTGAAGAGCAACCTGACCAAGCTGCCTCAGGTGGTGACGGACGTCGGGGTCCACCTCCAAAAGCTGTCCATTAACAACGAGGGCACCAAGCTAATGGTGCTCAACAGCCTGAAGAAGATGATGAACCTTACAGAGCTGGAGCTGTTGCGCTGTGACCTGGAACGAATCCCGCACTCAATCTTCAGCCTGCACAACCTGCAGGAGATCGACCTGAAGGACAACAATCTCAAGACCATCGAGGAGATCATCAGCTTCCAGCACCTGCACCGGCTAGTAAGCCTGAAGCTGTGGTACAACCAGATCGCCTACATCCCCATCCAGATCGGCACCTTGACAAACATGGAGAGGCTCTACCTAAACCGCAACAAGATTGAGAAGATCCCGGGCCAGCTCTTCTACTGCCGCAAACTGCGCTTCCTGGATCTGAGTCACAACAACCTGACCAGTATACATGCCGATGTGGGCTTCCTCCAGAACCTGCAGTACTTTGCTGTGACGGCCAACAGGATCGAGTCGCTCCCGCCGGAGCTGTTCCAGTGCAAGAAGCTGCGCACCCTGAACCTGGGCAACAACTGCCTGCATACTCTACCATCGCGCTTCGGCGAGCTGACGGGCCTGACCCAGCTGGAGCTGCGGGGTAACCGTCTGGAGTGCCTGCCCGTGGAGCTGGGGGAGTGCAGGCAGTTGAAGAGGAGCggcctggtggtggaggaggacctGTTCAAGACACTGCCCACAGAGGTCAAAGAACAGCTGTGGAGGGCCGACAAGGAGCTGGTCTGAGAGAGTCCAGAGAGAGGGAGcctaaggagaggaggaaagcggGAGAGAGGATTGGGCAGTGGAGGCTGATGTCACTTTCAATTGGAGGCCATTCTCAAATTTCTCCCTCCTTCCAGCCTCCACTAGTATGGGGTAGGAGAAAGGGGGGAGATGTGTCTGTATTGCTGGACACGCATCCAGAGAAggatggttggttggttgttgtCTTGGCTCTCCTGGCTAAATTTGTATTTTTTAGGGTAAATGGTAGGACTGCCACAATTACAGTATAACCGTGTAACCGATGAAGACAGCCATAaccatacaaaaaaaaaataaaaaaataa

Function

symbol description
lrrc8a Enables cyclic-GMP-AMP transmembrane transporter activity; identical protein binding activity; and volume-sensitive anion channel activity. Contributes to anion channel activity. Involved in several processes, including anion transmembrane transport; cell volume homeostasis; and protein hexamerization. Located in cell surface and plasma membrane. Is integral component of lysosomal membrane and integral component of plasma membrane. Part of ion channel complex. Implicated in agammaglobulinemia and agammaglobulinemia 5.

NR:

description
volume-regulated anion channel subunit LRRC8A

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601859.2 True 2925 mRNA 0.53 3 14930868 14959152

Neighbor

gene id symbol gene type direction distance location
phyhd1 phyhd1 coding downstream 5328 14914865 ~ 14925540 (-)
nup188 nup188 coding downstream 19277 14891979 ~ 14911591 (-)
LOC110523275 NA coding downstream 161708 14766176 ~ 14769160 (-)
slc25a25b LOC106570619 coding downstream 395746 14487750 ~ 14535122 (-)
pkn3 pkn3 coding downstream 450448 14460818 ~ 14480420 (-)
LOC110523283 LOC106569957 coding upstream 14097 14973249 ~ 14986191 (-)
LOC110524957 LOC106569957 coding upstream 28995 14988147 ~ 14995197 (-)
LOC110523296 LOC106569911 coding upstream 57604 15016756 ~ 15023815 (-)
LOC110516435 LOC106569911 coding upstream 77443 15036595 ~ 15043478 (-)
LOC110519481 LOC106569911 coding upstream 97228 15056380 ~ 15061384 (-)
G371043 NA non-coding downstream 1613 14925970 ~ 14929255 (-)
G371069 NA non-coding downstream 61819 14865745 ~ 14869049 (-)
G371060 NA non-coding downstream 79793 14850492 ~ 14851075 (-)
G371036 NA non-coding downstream 113231 14817393 ~ 14817637 (-)
G371035 NA non-coding downstream 114398 14816230 ~ 14816470 (-)
G371108 NA non-coding upstream 6983 14966135 ~ 14966439 (-)
G371109 NA non-coding upstream 8670 14967822 ~ 14968150 (-)
G371110 NA non-coding upstream 11424 14970576 ~ 14970831 (-)
G371251 NA non-coding upstream 17168 14976320 ~ 14991459 (-)
G371258 NA non-coding upstream 32427 14991579 ~ 14991938 (-)
G370635 NA other downstream 502277 14427338 ~ 14428591 (-)
G370333 NA other downstream 722163 14207190 ~ 14208705 (-)
G368921 NA other downstream 2224776 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2794078 12134052 ~ 12136790 (-)
G365752 NA other downstream 5740770 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 164323 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 736940 15693396 ~ 15707607 (-)
G372122 NA other upstream 1016454 15975606 ~ 15976116 (-)
G372123 NA other upstream 1019350 15978502 ~ 15981215 (-)

Expression


Co-expression Network