LOC110523283 (LOC106569957)


Basic Information

Item Value
gene id LOC110523283
gene name LOC106569957
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14973249 ~ 14986191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976883.1
GTCTCGCAAACGTTACCAGAAGCCTCGCGATGTTgtacctctgggtttagaaactctgtgctggtacttagctagctagcaacattaTTTGAATGTTTACATGACTGTTTCTCTGCGTTGGTAACAGATAATAATCAAAAATGAGCAACGAAGCGGTCTTTGAAACAATTGAAGAGGTCAATAAGCATATCTCACACGTCGAAGAGTCAACCTGTGTGAAATATATTTCTTACCGTGTGGACAAGCGCTTCAATGACCAAgGTTGGAAACCACAGGACCACAAGAACCGGTTATACTGGGAATGGAAGTACGGCAAGGGTACTCCCTGTATCCCCTTTGACGGTGTACCGTTTGTGTTCATCGGACACAAGCTAATGGGATGCCACAGGGGCCGGGCAAAGTGTGGAATCAAGAAGAGGCAGGAACTTCAGGATCAAAGGGCAAAAGATGGCAAGGAAAAAAGAAACCTGTTGCTGAAAACCAAGAAAGTAGCATGCCCTGCTGTGTTCACAATCAGCCGCATTGTGAAGTTCCCTGGATTCAAGTTGGAGAAGGACACATCACGGTTGAGGAGGGTCATGTCTATTTCCATCAAACAAGCTCTCCAGACAGAcccagcctcagtgcagtggaagATACAGTATTTCCTCAAAATACCCAGTGTCACTGACCACAAGGGCCATCCTATTGGAAAGGGTGCAGATCAGATGGACGACAGGGTCAAAGGTTACATCCGAGCGTTGGTGCAGCAGGGGGTGAGGAAGGTGAAGGAGGTAAAGAACCAGATGGTCCAGTACGTGCGGACGGAGCTGTTCCAAGACACGACCCCGCCGCCGCTGAGGCGCTTCTTCCCCACAGAGAAAACCATCCACGCCGTCATGGCTCAGGTCATCGCGGAGGAACACTACAGCAAAATAGACCTGGTCAACCTGCTGaccTTGGCAGAGAATTGGAAGGCAGAAGCTCCTAGAATCAACTTCCTGCTTAGGGTTCAATCAGAGAGCGAGAACCTGTTGCTCTGCTACCAGACGGACTGGCAGCGGCGGCTGCTTCGGCAGTATGGCAAGGAGGTGTGCTTCCTGGATGCGGCCTATAAGAGGACGCGCTTccccctgccactcttcttcctgTGTGTGCGCACCAATGTGAGTGTGGCGCCGGTGGGCCTGTTTGTCGTGCAGTCGAGGAGCGCCGAAGCCTTGGGGGAGGCGCTGGGGGTGTTCAGGCAGTGGAACCGGGGCTGGAGTCCAGCCTACATCCTCACTGAACACTGCCCTGTGGAGATGAAGGCGGTGGAGGCAGCATTCACAGGTGCTCAGGCAGTCTTCAGCGATCACCTGCGGGAGAGGACCTGGACCAAGTGGCTGAGCAACCGGTCCCGAGCCATCACCAACCAGGAGGGGATCTTTGATATGATGAAGGCCATCGCTGGTGCCCTTACCAGAGAGCAACACCAGGGGGCAGTAGAACTACTACAGCAGAGCCCCATCTGGTTGGAAAAGAGACAACTTTTCAAGAACTGGTTCACTAACAAGTGGCTGTCAGAGGAGAAGAGATGGGCGAACGCTGTGAGGGTTGATGTTGTCAACTTTGTGTCTATGGTGAACGGAGGTCTGGAAATGCAGAGCGACTTTTTCACACATAATAACATGAAGGTCCATAAAAAAGACACCCTGAGCCAAATGCTGCAGTTTCTTGTTGACGACTACTTCCCACAGATGCACCAAAGGTACACAGACCTCAACAGCCAGTCCTCTGGCGAGTACAGCCTCAACCCCACTGTGCCTCCGTTCCTGTGGCAtcgcccttggagtgtggtggcCCTGGTGATGGACAACATGTCTGCGGCCCTGCAAGACCCCGACATCGTGGTGGAGCAGGCCAGCGACGCCGCCGACGGCACCTTCCGGGTGAAGAGTCGGGCAGAGACCACGGCAGCGCGGTCCTACGCGGTCAGCTTCGGTTCAGAGTCCACCTGGCCCTCCTGTGAGTGTGAGGTGTGGAGGGACCAGCGCCTGCCCTGTGAACACTTCTGTCACGTCTTCAGGTCTGAGCATAACTGGACCTGGGAGCACCTGTGTCCCAAATACAGGGACCACCCTCTGCTCACGCTGCATTCACAGACCACTCACACCACAACAGAGGAGATAGAGGAAGCCCTCAATGGTCTAATGCATCTCTCCCCAgcttccccagtctctcttcagTGGGATGGGCCTGAAGAAACAGTGCCACTGGTGCAAACTCCTCAAACTCCACAGTTACAACTGTATAGCATACAAACACAGTGGGTGGCCCCACAGGCTTCACAGGGTCTGCGGGAGAGGGAGGAACTGCAAAAGGAGGAACTGCAGAGGGAGTGTGTGGCCAAACTCAAATCCATCATGGAGAATGTGAGTGGGATCAACGACATTGACCACCTACAGGAGCTCAGGCAGAAACTGGACGTTCTCCAGGCTCAGAGTGAGGCCATGCTGGTTCAGAAGGACGCTAGCGTCAAAACAGTTACCACCTCTAAGGGGAAGAGAAAAAGGGCAGGGGTGGAGATTATCGTGGCCATGCCCAAACGCATCAAAGTGCTCTCCCGGGTTGATGTAGAAAATGTTCAGAAATAGCTTTTTTCTAAAGAGGGAAAATAAAGTACGGTATTAATCAGGTTGTCGCTCTTATTTCTTGGGTGATGTACAAATAACTCTTTGTTATGATGTTATCACGTATCCAGTTCTAGAAAGTGTTTGGCTGCTTGATCACAAGGGTCAGCTTGATGTAAGATGCTGCGCACGTTCACAAACCTTTCCATAACAAATTTATACATTTGTTATATTGCACAGTCCAAACTATTTAGAAATTAGCCAAGTATCTCAACTCCATGCTGATTTCTTCTGCGGAGTTGAGTGGAGCCTAGAGTTTTTGGACTAAACATCCAACATTCTTCGAGTTGCTGTATAATCGATACTTCAAAATTGTAAATTCTTAAACCCTTACGGTGTATCtattttttttccctctctggctttctttgtttgctgaaatccataccttttaaataaaaagttaatcaaatacaaccactGACTGTTTCCTCAT

Function

NR:

description
uncharacterized protein LOC110523283

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976883.1 True 3087 mRNA 0.51 9 14973249 14986191

Neighbor

gene id symbol gene type direction distance location
LOC110523281 lrrc8a coding downstream 14097 14930868 ~ 14959152 (-)
phyhd1 phyhd1 coding downstream 47709 14914865 ~ 14925540 (-)
nup188 nup188 coding downstream 61658 14891979 ~ 14911591 (-)
LOC110523275 NA coding downstream 204089 14766176 ~ 14769160 (-)
slc25a25b LOC106570619 coding downstream 438127 14487750 ~ 14535122 (-)
LOC110524957 LOC106569957 coding upstream 1956 14988147 ~ 14995197 (-)
LOC110523296 LOC106569911 coding upstream 30565 15016756 ~ 15023815 (-)
LOC110516435 LOC106569911 coding upstream 50404 15036595 ~ 15043478 (-)
LOC110519481 LOC106569911 coding upstream 70189 15056380 ~ 15061384 (-)
LOC110523297 LOC106569911 coding upstream 92608 15078799 ~ 15082588 (-)
G371110 NA non-coding downstream 2418 14970576 ~ 14970831 (-)
G371109 NA non-coding downstream 5099 14967822 ~ 14968150 (-)
G371108 NA non-coding downstream 6810 14966135 ~ 14966439 (-)
G371043 NA non-coding downstream 43994 14925970 ~ 14929255 (-)
G371069 NA non-coding downstream 104200 14865745 ~ 14869049 (-)
G371258 NA non-coding upstream 5388 14991579 ~ 14991938 (-)
LOC110511258 dnlz non-coding upstream 10387 14996578 ~ 15121731 (-)
G371268 NA non-coding upstream 22445 15008636 ~ 15049151 (-)
G371272 NA non-coding upstream 45609 15031800 ~ 15051963 (-)
G371274 NA non-coding upstream 47524 15033715 ~ 15053918 (-)
G370635 NA other downstream 544658 14427338 ~ 14428591 (-)
G370333 NA other downstream 764544 14207190 ~ 14208705 (-)
G368921 NA other downstream 2267157 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2836459 12134052 ~ 12136790 (-)
G365752 NA other downstream 5783151 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 137284 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 709901 15693396 ~ 15707607 (-)
G372122 NA other upstream 989415 15975606 ~ 15976116 (-)
G372123 NA other upstream 992311 15978502 ~ 15981215 (-)

Expression

LOC110523283(LOC106569957) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110523283(LOC106569957) Expression in each Bioproject

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LOC110523283(LOC106569957) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network