LOC110524957 (LOC106569957)


Basic Information

Item Value
gene id LOC110524957
gene name LOC106569957
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14988147 ~ 14995197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976884.1
CCGCACGTGAACCAATTAAATAATCGCAAACATTACCGCTTTAGTTTAGCTAGCGACATTTTTTGAATGTTTATATGTATTGGTAGCAAATTATAAATAAAAATGAGCGACGAAGCTGTATTTGAAACAATTGAAGAGGTCAATAAGCATATCTCACACGTGGAAGAGTCAACCTGTGTGAAATATATTTCTTACCGTGTGGACAAGCGATTCAATGACCAAGGTTGGAAACCACAGGACCACAAGAACCGGTTATACTGGGAATGGAAGTACGGCAAGGGTACTCCCTCTATCCCCTTTGACAGAGTACCCTTCATGTTCATCGGACACAAACTGATGGGATGCCACAGGGGCCGGGCAAAGTGTGGATTCAAGAAGAGGCAGGAACTTGAGGATCAAAGGGAAAAAGATGGCAAGGAAAAAAGAAACTTGTTGCTGAAAACCAAGAAAGTAGCATGCCCTGCTGTGTTCACAATCAGCCGCATTGTGAAGTTCCCTGGATTCAAGTTGGAGAAGGACACATCGCGGTTGAGGAGGGTCATGTCTATTTCCATCAAACAAGCTCTCCAGACAGACCCAGCCTCGGTGCAGTGGAAGATACAGTATTTCCTCAAAATACCCAGTGTCACTGACCACAAGGGCCATCCTATTGGAAAGGGTGCAGATCAGATGGACGACAGGGTCAAAGGTTACATCCGAGCGTTGGTGCAGCAGGGGGTGAGGAAGGTGAAGGAGGTAAAGAACCAGATGGTCCAGTACGTGCGGACGGAGCTGTTCCAAGACACGACCCCGCCGCCGCTGAGGCGCTTCTTCCCCACAGAGAAAACCATCCACGCCGTCATGGCTCAGGTCATCGCGGAGGAACACTACAGCAAAATAGACCTGGTCAACCTGCTGacaTTGGCAGAGAATTGGAAGGCAGAAGCTCCTAGAATCAACTTCCTGCTTAGGGTTCAATCAGAGAGCGAGAACCTGTTGCTCTGCTACCAGACGGACTGGCAGCGGTGGCTGCTTCGGCAGTATGGCAAGGAGGTGTGCTTCCTGGACGCGGCCTATAAGAGGACGCGCTTccccctgccactcttcttcctgTGCGTGCGCACCAATGTGAGCGTGGCGCCGGTGGGCCTGTTTGTCGTGCAGTCGAGGAGCGCCGAAGCCTTGGGGGAGGCGCTGGGGGTGTTCAGGCAGTGGAACCGGGGCTGGAGTCCAGCCTACATCCTCACTGAACACTGCCCTGTGGAGATGAAGGCGGTGGAAGCAGCATTCACAGGTGCTCAGGCAGTCTTCAGCGATCACCTGCGGGAGAGGACCTGGACCAAGTGGCTGAGCAACCGGTCCCGAGCCATCACCAACCAGGAGGGGATCTTTGATATGATGAAGGCCATCGCTGGTGCCCTTACCAGAGAGCAACACCAGGGGGCAGTAGAACTACTACAGCAGAGCCCCATCTGGTTGGAAAAGAGACAACTTTTCAAGAACTGGTTCACTAACAAGTGGCTGTCAGAGGAGAAGAGATGGGCGAACGCTGTGAGGGTTGATGTTGTCAACTTTGTGTCTATGGTGAACGGAGGTCTGGAAATGCAGAGCGACTTTTTCACACATAATAACATGAAGGTCCATAAAAAAGACACCCTGAGCCAAATGCTGCAGTTTCTGGTTGACGACTACTTCCCACAGATGCACCAAAGGTACACAGACCTCAACAGCCAGTCCTCTGGCGAGTACAGCCTCAACCCCACTGTGCCTCCGTTCCTGTGGCAtcgcccttggagtgtggtggcCCTGGTGATGGACAACATGTCTGCGGCCCTGCAAGACCCCGACATCGTGGTGGAGCAGGCCAGCGACGCCGCCGACCGCACCTTCCGGGTGAAGAGTCGGGCAGAGACCACGGCAGCGCGGTCCTACGCGGTCAGCTTCGGTTCAGAGTCCACCTGGCCCTCCTGTGAGTGTGAGGTGTGGAGGGACCAGCGGCTGCCCTGTGAACACTTCTGTCACGTCTTCAGGTCTGAGCTTAACTGGACCTGGGAGCACCTGTGTCCCAAATACAGGGACCACCCTCTGCTCACGCTGCATTCACAGACCACTCACACaacagaggagatggaggaagccCTCAATGGTCTAATGCATCTCTCCCCAgcttccccagtctctcttcagTGGGATGGGCCTGAAGAAACAGTGCCACTGGTGCAAACTCCTCAAACTCCACAGTTACAACTGTATAGCATACAAACACAGTGGGTGGCCCCACAGGCTTCACAGGGTCTGCGGGAGAGGGAGGAACTGCAAAAGGAGGAACTGCAGAGGGAGTGTGTGGCCAAACTCAAATCCATCATGGAGAATGTGAGTGGGATCAATGACATTGACCACCTACAGGAGCTCAGGCAGAAACTGGATGTTCTCCAGGCTCAGAGTGAGGCCATGCTGGTTCAGAAGGACGCTAGCGTCAAAACAGTTACCACCCCCATGGGGATGAGAAAAAGGGCAGGGGTGGAGATTATCGTGGCCATGCCCAAACGCATCAAAGTGCTCTCCCGGGTTGATGTAGAAAATGTTCAGAAATAGCTTTTTTCtaaaaagggaaaataaagaaTGTTCAGTATTAAAATGCAACTCTGCCACTTAACTTGTGGGTTGTTTTTATGTAGTATTTAGTGTTGTCCTACACAATTTGTATACTTTTTTAAAAAAATTGAATGTCTATTGTCTCTCTGTGATGAGCAAAACTGGAAATTGCTTGTCTGACGTTAAGTAAGATCCCTGAGATGACTAATAAAATAATTATAGTCACCCCTA
>TU421926
CTTTAGTTTAGCTAGCGACATTTTTTGAATGTTTATATGTATTGGTAGCAAATTATAAATAAAAATGAGCGACGAAGCTGTATTTGAAACAATTGAAGAGGTCAATAAGCATATCTCACACGTGGAAGAGTCAACCTGTGTGAAATATATTTCTTACCGTGTGGACAAGCGATTCAATGACCAAGGTTGGAAACCACAGGACCACAAGAACCGGTTATACTGGGAATGGAAGTACGGCAAGGGTACTCCCTCTATCCCCTTTGACAGAGTACCCTTCATGTTCATCGGACACAAACTGATGGGATGCCACAGGGGCCGGGCAAAGTGTGGATTCAAGAAGAGGCAGGAACTTGAGGATCAAAGGGAAAAAGATGGCAAGGAAAAAAGAAACTTGTTGCTGAAAACCAAGAAAGTAGCATGCCCTGCTGTGTTCACAATCAGCC

Function

NR:

description
calcium-responsive transcription factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976884.1 False 2805 mRNA 0.51 9 14988147 14995197
TU421926 True 443 TUCP 0.43 3 14993128 14995159

Neighbor

gene id symbol gene type direction distance location
LOC110523283 LOC106569957 coding downstream 1956 14973249 ~ 14986191 (-)
LOC110523281 lrrc8a coding downstream 28995 14930868 ~ 14959152 (-)
phyhd1 phyhd1 coding downstream 62607 14914865 ~ 14925540 (-)
nup188 nup188 coding downstream 76556 14891979 ~ 14911591 (-)
LOC110523275 NA coding downstream 218987 14766176 ~ 14769160 (-)
LOC110523296 LOC106569911 coding upstream 21559 15016756 ~ 15023815 (-)
LOC110516435 LOC106569911 coding upstream 41398 15036595 ~ 15043478 (-)
LOC110519481 LOC106569911 coding upstream 61183 15056380 ~ 15061384 (-)
LOC110523297 LOC106569911 coding upstream 83602 15078799 ~ 15082588 (-)
LOC110523286 LOC106569911 coding upstream 103588 15098785 ~ 15117065 (-)
G371110 NA non-coding downstream 17316 14970576 ~ 14970831 (-)
G371109 NA non-coding downstream 19997 14967822 ~ 14968150 (-)
G371108 NA non-coding downstream 21708 14966135 ~ 14966439 (-)
G371043 NA non-coding downstream 58892 14925970 ~ 14929255 (-)
G371069 NA non-coding downstream 119098 14865745 ~ 14869049 (-)
LOC110511258 dnlz non-coding upstream 1381 14996578 ~ 15121731 (-)
G371268 NA non-coding upstream 13439 15008636 ~ 15049151 (-)
G371272 NA non-coding upstream 36603 15031800 ~ 15051963 (-)
G371274 NA non-coding upstream 38518 15033715 ~ 15053918 (-)
G371276 NA non-coding upstream 47007 15042204 ~ 15042688 (-)
G370635 NA other downstream 559556 14427338 ~ 14428591 (-)
G370333 NA other downstream 779442 14207190 ~ 14208705 (-)
G368921 NA other downstream 2282055 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2851357 12134052 ~ 12136790 (-)
G365752 NA other downstream 5798049 9189669 ~ 9190098 (-)
G371294 LOC106569911 other upstream 128278 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 700895 15693396 ~ 15707607 (-)
G372122 NA other upstream 980409 15975606 ~ 15976116 (-)
G372123 NA other upstream 983305 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1939038 16909582 ~ 16942359 (-)
G371258 NA non-coding downstream 1190 14991579 ~ 14991938 (-)
G371251 NA non-coding downstream 1669 14976320 ~ 14991459 (-)

Expression


Co-expression Network