LOC110518391 (LOC106596183)


Basic Information

Item Value
gene id LOC110518391
gene name LOC106596183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15007790 ~ 15014612 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976890.1
TTGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCTTTTTCTTTGGTTGTTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGATACTTTCCCTGCCACAGTGGACAATTCTACAAACACCATCAACAATTCTACAAATGTGACTTTCACTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCAGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGATCAACGATTATCTGGTGGACAGAAAGGTAACTTTACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCATATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTACGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACACGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCGAAGAAGATTTCAACACCGCTGCTGTCGACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTGA
>XM_036976891.1
TTGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCTTTTTCTTTGGTTGTTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGATACTTTCCCTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCAGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGATCAACGATTATCTGGTGGACAGAAAGGTAACTTTACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCATATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTACGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACACGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCGAAGAAGATTTCAACACCGCTGCTGTCGACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTGA

Function

NR:

description
high choriolytic enzyme 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976890.1 False 1238 mRNA 0.45 11 15007790 15014612
XM_036976891.1 True 1181 mRNA 0.45 10 15007790 15014612

Neighbor

gene id symbol gene type direction distance location
dnlz dnlz coding upstream 8354 14995248 ~ 14999436 (+)
dolk dolk coding upstream 91112 14901565 ~ 14916678 (+)
cdk5rap2 LOC106570081 coding upstream 115596 14819309 ~ 14892194 (+)
LOC118964542 LOC106569496 coding upstream 202264 14798616 ~ 14805526 (+)
LOC110523276 NA coding upstream 215241 14785471 ~ 14793184 (+)
LOC110523290 LOC106596183 coding downstream 13191 15027803 ~ 15034589 (+)
LOC110519479 LOC106596183 coding downstream 33127 15047739 ~ 15054353 (+)
LOC110518158 LOC106596183 coding downstream 51015 15065627 ~ 15075700 (+)
LOC110519478 LOC106596183 coding downstream 72266 15086878 ~ 15096757 (+)
uck1 LOC106569943 coding downstream 102612 15117198 ~ 15187954 (+)
G371113 NA non-coding upstream 34716 14972729 ~ 14973074 (+)
G371111 NA non-coding upstream 36000 14971481 ~ 14971790 (+)
G371101 NA non-coding upstream 44859 14962632 ~ 14962931 (+)
G371094 NA non-coding upstream 48295 14959238 ~ 14959495 (+)
G370961 NA non-coding upstream 49048 14958511 ~ 14958742 (+)
G371159 NA non-coding downstream 1209 15015821 ~ 15056218 (+)
G371170 NA non-coding downstream 52413 15067025 ~ 15088540 (+)
G371171 NA non-coding downstream 63095 15077707 ~ 15100378 (+)
G371172 LOC106569911 non-coding downstream 66080 15080692 ~ 15102326 (+)
G370414 NA other upstream 639629 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 681895 14321104 ~ 14325895 (+)
G370360 NA other upstream 748657 14255803 ~ 14259133 (+)
G369763 NA other upstream 1238494 13765247 ~ 13769296 (+)
G371182 NA other downstream 109678 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 776947 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1204994 16218328 ~ 16220933 (+)
G372373 NA other downstream 1721030 16735642 ~ 16738500 (+)

Expression


Co-expression Network