LOC110523296 (LOC106569911)


Basic Information

Item Value
gene id LOC110523296
gene name LOC106569911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15016756 ~ 15023815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976537.1
GCACAATTTAATTTAGATGATTTGAATAATATAATCATATTTTTAAGCCATATTGTATCTTTTTCAGGATTACTGTAATTGAAGGAACTATGGGAAAGTTCTCCTTTCCAAGGCTCATCATAAGAATGCCATGGGCAAATCGGACTGCACAGGATGATTTCTGCACAGGAACTAGTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCCTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATGCTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCACACCCACACGCTTCACACCGATTTGCTGTCCCATCCCACCTCCTGGCTCCCGGCCATCCTGCCCGGATGAGACAGACCCATCCGCAGGTCCACCCCAGGTCCCCATTGACTGGCCAGGCAAAGGTCAAGGATGAGGTTAAGAGGCAAGAGACTGCATCGTCTGAGGAATTGTCTGAGGAAGTTCAACGGAGAGGAGCAGAAATTGCAAGCATGTATAAAGCACAGCTGAAAGAGAGGATGGCCcaaaagagaaaggaagagattCTGAAGAAAATGGCAAACAGCGATGACAAGAACGATGACAGTGAGGCCTCCTGCTCCTCTGCAGTAAAACAATCTAATATCCCTGCCACAGCCCCCGAGCGCCCGGACAGCCCAGAGGCCACGCCAGTGGCCGCCCGAGAAGACACTCAGGGGGACACCCAGCAGGACCTGGCAGAGGTTGTGAATGTGCTCAAGAGGCAATCATCTGATCTGCCTGACGATGTTTGTGAGGAGTCACTCACATGGAAATCCATTTACGAGGAGCTGTGCCCGCTCGCTCACAGAGTGAACACAGAAGCTGACTACATCAAGGCGCTTCGCGTCATCACTGAGAATGCTGTGACTCCCTCGTGCTCGTCTGAGGATGATGTGTCTCAGAGTGTGAGTGAGGACACAAGTCAGGAGGGGAGTAGTGAAAGTGAGGAGAGCATGAGTGGACAACAGCAGAGATGTCTACACAGGGATCATTATGGTAAGAGGGACAGGAAGGAGATTGATAGTGGTAAAAGGGAAGGGAGATTTGCAACCGCCAATGCAATGTGTATGATGGCGAGCCGAGGGATAGAAGAACTTAATGCCATGAGCTACGCAGACAGGATCAAATATTTCAAGTATGAGGCTAAGAGAAATGAAGAGATGATGAAGATTGAAAGGAGGAAGGAAAAAGCCAGGAACGAAGAGCTCAAAAAGTGGGAAAAGATACAGAAGAAATTGAATGAGGAGAAAAGGAAAAGGAcagaaaatatggaaaaaaacAAGTTAGAGGAGCAGAGGAAAAGGGAGAAGGCAGAGATGAAACTAAAGATCGAACATGAGAAAAAGAGACAAGAGCAAGAGAaaaagatggagaaacagagggcAGAGAAGTTGAaaaagatggagaaacagaggatggaggaggagaggaacagggaaAAGGAGAGAATGAAGGTGTTGGAGATGCAGCAAAAGGCacgagagaaagaagagaagaggaggaaagaggaacaGAAAAGGAGATTGAAGATACAACAGGAACAAGAGAAGGAGGAACAGAAAAGGCAGACAAGGATACGGGACGAGGATAAGAAGAGAGCAGAGCTTCAAAGAATAAAAGATCACGAGGCCAGGTTCAAGATGGAGATGGAGAAACtgtatgagagagaagagaggaatgcACAGATTGAAAGAGAAAAGAGGCGTGCGCTGTGTCAGAAaaaaggacagacacagagagcaaaACAGGTGGTGGCATACGAGGTCACAGCGTCTACATCTGACGCCTCtgtgaggagggaagagagggagcagcGTCCAGAGACCGCTCACGCACAGTCTGCAAAGAGGAGAACAAGGAAGAAGCAGAAGAAAGCGGCGGACGAGGCATCGACAACTTTTCAGTAGATGACAAAAGAAAGGGAGCAGACAAAAGAAGAAATGTACAAGTCAATGCTCCTAGCCTGTTCAAGTCTGAGATAGATGAAAAGAGCAGCCAAAGAAACAGATCTGTTGAAGCATCAATTGGAAAGGAtgggagggttggaggaggagcaCAGCTGGATGACTTCATTAGATTGTGGCATATGAGGTCTCTTTATCTGTTGAAGCATCAATAGGAAAGGatgaaagggagggaggcaggaagaGGAAAACACAGAAGAGCAGGTGAGGAGCACTCTATGTTCTGCTTCCATGTGGATTGACAGCATTGCTTTCATGAGCTTCTGGAGGACAccatggaggaagagggagagggtctATGATAGGCAGTTTGCCATGGCCCTAAATGGGCCTTTGGATGTTAATTCTTTCTGCTTTATATCATACGACTTTACAATAAAAATGAATTGTAAGCA

Function

NR:

description
golgin subfamily A member 6-like protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976537.1 True 2815 mRNA 0.48 7 15016756 15023815

Neighbor

gene id symbol gene type direction distance location
LOC110524957 LOC106569957 coding downstream 21559 14988147 ~ 14995197 (-)
LOC110523283 LOC106569957 coding downstream 30565 14973249 ~ 14986191 (-)
LOC110523281 lrrc8a coding downstream 57604 14930868 ~ 14959152 (-)
phyhd1 phyhd1 coding downstream 91216 14914865 ~ 14925540 (-)
nup188 nup188 coding downstream 105165 14891979 ~ 14911591 (-)
LOC110516435 LOC106569911 coding upstream 12780 15036595 ~ 15043478 (-)
LOC110519481 LOC106569911 coding upstream 32565 15056380 ~ 15061384 (-)
LOC110523297 LOC106569911 coding upstream 54984 15078799 ~ 15082588 (-)
LOC110523286 LOC106569911 coding upstream 74970 15098785 ~ 15117065 (-)
LOC110511258 dnlz coding upstream 96539 14996578 ~ 15121731 (-)
G371258 NA non-coding downstream 24818 14991579 ~ 14991938 (-)
G371251 NA non-coding downstream 25297 14976320 ~ 14991459 (-)
G371110 NA non-coding downstream 45925 14970576 ~ 14970831 (-)
G371109 NA non-coding downstream 48606 14967822 ~ 14968150 (-)
G371108 NA non-coding downstream 50317 14966135 ~ 14966439 (-)
G371272 NA non-coding upstream 7985 15031800 ~ 15051963 (-)
G371274 NA non-coding upstream 9900 15033715 ~ 15053918 (-)
G371276 NA non-coding upstream 18389 15042204 ~ 15042688 (-)
G371271 NA non-coding upstream 27949 15051764 ~ 15096656 (-)
LOC118936652 LOC106569911 non-coding upstream 58015 15081830 ~ 15136742 (-)
G370635 NA other downstream 588165 14427338 ~ 14428591 (-)
G370333 NA other downstream 808051 14207190 ~ 14208705 (-)
G368921 NA other downstream 2310664 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2879966 12134052 ~ 12136790 (-)
G371294 LOC106569911 other upstream 99660 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 672277 15693396 ~ 15707607 (-)
G372122 NA other upstream 951791 15975606 ~ 15976116 (-)
G372123 NA other upstream 954687 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1910420 16909582 ~ 16942359 (-)

Expression


Co-expression Network