LOC110523290 (LOC106596183)


Basic Information

Item Value
gene id LOC110523290
gene name LOC106596183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15027803 ~ 15034589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976889.1
TGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCTTTTTCTTTGGTTGTTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGACTCTCATCTGGTGTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGCTACTTTCCCTGCCACAGTGGACAATTCTACAAACACCATCAACAATTCTACAAATGAGACTTTCACTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCAGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGATCAACGATTATCTGGTGGACAGAAAGGTAACTATACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCATATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTACGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACACGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCGAAGAAGATTTCAACACCGCTGCTGTCGACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTGA

Function

NR:

description
high choriolytic enzyme 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976889.1 True 1237 mRNA 0.45 11 15027803 15034589

Neighbor

gene id symbol gene type direction distance location
LOC110518391 LOC106596183 coding upstream 13191 15007790 ~ 15014612 (+)
dnlz dnlz coding upstream 28367 14995248 ~ 14999436 (+)
dolk dolk coding upstream 111125 14901565 ~ 14916678 (+)
cdk5rap2 LOC106570081 coding upstream 135609 14819309 ~ 14892194 (+)
LOC118964542 LOC106569496 coding upstream 222277 14798616 ~ 14805526 (+)
LOC110519479 LOC106596183 coding downstream 13150 15047739 ~ 15054353 (+)
LOC110518158 LOC106596183 coding downstream 31038 15065627 ~ 15075700 (+)
LOC110519478 LOC106596183 coding downstream 52289 15086878 ~ 15096757 (+)
uck1 LOC106569943 coding downstream 82635 15117198 ~ 15187954 (+)
LOC110523300 LOC105028392 coding downstream 429966 15464555 ~ 15591443 (+)
G371113 NA non-coding upstream 54729 14972729 ~ 14973074 (+)
G371111 NA non-coding upstream 56013 14971481 ~ 14971790 (+)
G371101 NA non-coding upstream 64872 14962632 ~ 14962931 (+)
G371094 NA non-coding upstream 68308 14959238 ~ 14959495 (+)
G370961 NA non-coding upstream 69061 14958511 ~ 14958742 (+)
G371170 NA non-coding downstream 32436 15067025 ~ 15088540 (+)
G371171 NA non-coding downstream 43118 15077707 ~ 15100378 (+)
G371172 LOC106569911 non-coding downstream 46103 15080692 ~ 15102326 (+)
G371139 NA non-coding downstream 56378 15090967 ~ 15150407 (+)
G370414 NA other upstream 659642 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 701908 14321104 ~ 14325895 (+)
G370360 NA other upstream 768670 14255803 ~ 14259133 (+)
G369763 NA other upstream 1258507 13765247 ~ 13769296 (+)
G371182 NA other downstream 89701 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 756970 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1185017 16218328 ~ 16220933 (+)
G372373 NA other downstream 1701053 16735642 ~ 16738500 (+)

Expression


Co-expression Network