LOC110516435 (LOC106569911)


Basic Information

Item Value
gene id LOC110516435
gene name LOC106569911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15036595 ~ 15043478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976538.1
CAGGATGATTTCTGCACAGGAACTACTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCCTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATGCTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCACACCCACACGCTTCACACCGATTTGCTGTCCCATCCCACCTCCTGGCTCCCGGCCATCCTGCCCGGATGAGACAGACCCATCCGCAGGTCCACCCCAGGTCCCCATTGACTGGCCAGGCAAAGGTCAAGGATGAGGTTAAGAGGCAAGAGACTGCATCGTCTGAGGAATTGTCTGAGGAAGTTCAACGGAGAGGAGCAGAAATTGCAAGCATGTATAAAGCACAGCTGAAAGAGAGGATGGCCcaaaagagaaaggaagagattCTGAAGAAAATGGCAAACAGCGATGACAAGAACGATGACAGTGAGGCCTCCTGCTCCTCTGCAGTAAAACAATCTAATATCCCTGCCACAGCCCCCGAGCGCCCGGACAGCCCAGAGGCCACGCCAGTGGCCGCCCGAGAAGACACTCAGGGGGACACCCAGCAGGACCTGGCAGAGGTTGTGAATGTGCTCAAGAGGCAATCATCTGATCTGCCTGACGATGTTTGTGAGGAGTCACTCACATGGAAATCCATTTACGAGGAGCTGTGCCCGCTCGCTCACAGAGTGAACACAGAAGCTGACTACATCAAGGCGCTTCGCGTCATCACTGAGAATGCTGTGACTCCCTCGTGCTCGTCTGAGGATGATGTGTCTCAGAGTGTGAGTGAGGACACAAGTCAGGAGGGGAGTAGTGAAAGTGAGGAGAGCATGAGTGGACAACAGCAGAGATGTCTACACAGGGATCATTATGGTAAGAGGGACAGGAAGGAGATTGATAGTGGTAAAAGGGAAGGGAGATTTGCAACCGCCAATGCAATGTGTATGATGGCGAGCCGAGGGATAGAAGAACTTAATGCCATGAGCTACGCAGACAGGATCAAATATTTCAAGTATGAGGCTAAGAGAAATGAAGAGATGATGAAGATTGAAAGGAGGAAGGAAAAAGCCAGGAACGAAGAGCTCAAAAAGTGGGAAAAGATACAGAAGAAATTGAATGAGGAGAAAAGGAAAAGGAcagaaaatatggaaaaaaacAAGTTAGAGGAGCAGAGGAAAAGGGAGAAGGCAGAGATGAAACTAAAGATCGAACATGAGAAAAAGAGACAAGAGCAAGAGAaaaagatggagaaacagagggcAGAGAAGTTGAaaaagatggagaaacagaggatggaggaggagaggaacagggaaAAGGAGAGAATGAAGGTGTTGGAGATGCAGCAAAAGGCacgagagaaagaagagaagaggaggaaagaggaacaGAAAAGGAGATTGAAGATACAACAGGAACAAGAGAAGGAGGAACAGAAAAGGCAGACAAGGATACGGGACGAGGATAAGAAGAGAGCAGAGCTTCAAAGAATAAAAGATCACGAGGCCAGGTTCAAGATGGAGATGGAGAAACtgtatgagagagaagagaggaatgcACAGATTGAAAGAGAAAAGAGGCGTGCGCTGTGTCAGAAaaaaggacagacacagagagcaaaACAGGTGGTGGCATACGAGGTCACAGCGTCTACATCTGACGCCTCtgtgaggagggaagagagggagcagcGTCCAGAGACCGCTCACGCACAGTCTGCAAAGAGGAGAACAAGGAAGAAGCAGAAGAAAGCGGCGGACGAGGCATCGACAACTTTTCAGTAGATGACAAAAGAAAGGGAGCAGACAAAAGAAGAAATGTACAAGTCAATGCTCCTAGCCTGTTCAAGTCTGAGATAGATGAAAAGAGCAGCCAAAGAAACAGATCTGTTGAAGCATCAATTGGAAAGGAtgggagggttggaggaggagcaCAGCTGGATGACTTCATTAGGTAAGTGTTTACTATCAAAGCCTGTTCTCTGTAGACAACTGTATTAGTGTTGATAGAAGTATGTTTAGGTAATGTCTTTCAACTCAACCACTACAATTCCTGATCTCATGTGATTATTCACCTCAAGTGAGTGGGCATTCGGATGTTTTTTCCCGAAACAGATTGTGGCATATGAGGTCTCTTTATCTGTTGAAGCATCAATAGGAAAGGatgaaagggagggaggcaggaagaGGAAAACACAGAAGAGCAGGTGAGGAGCACTCTATGTTCTGCTTCCATGTGGATTGACAGCATTGCTTTCATGAGCTTCTGGAGGACAccatggaggaagagggagagggtctATGATAGGCAGTTTGCCATGGCCCTAAATGGGCCTTTGGATGTTAATTCTTTCTGCTTTATATCATACGACTTTACAATAAAAATGAATTGTAAGCATCAGCCTCTTCTGTTGTGTGATCAGTGCAGTAGTAGTAAGATTGGTGTAAACCCAAGGAAtattctggccttctaggcagagttcctctgtccagtgtctgtgttcttttgcccatcttaacatttttattggccagt

Function

NR:

description
golgin subfamily A member 6-like protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976538.1 True 2965 mRNA 0.48 5 15036595 15043478

Neighbor

gene id symbol gene type direction distance location
LOC110523296 LOC106569911 coding downstream 12780 15016756 ~ 15023815 (-)
LOC110524957 LOC106569957 coding downstream 41398 14988147 ~ 14995197 (-)
LOC110523283 LOC106569957 coding downstream 50404 14973249 ~ 14986191 (-)
LOC110523281 lrrc8a coding downstream 77443 14930868 ~ 14959152 (-)
phyhd1 phyhd1 coding downstream 111055 14914865 ~ 14925540 (-)
LOC110519481 LOC106569911 coding upstream 12902 15056380 ~ 15061384 (-)
LOC110523297 LOC106569911 coding upstream 35321 15078799 ~ 15082588 (-)
LOC110523286 LOC106569911 coding upstream 55307 15098785 ~ 15117065 (-)
LOC110511258 dnlz coding upstream 76876 14996578 ~ 15121731 (-)
LOC118964741 LOC106569911 coding upstream 82284 15125762 ~ 15127293 (-)
G371258 NA non-coding downstream 44657 14991579 ~ 14991938 (-)
G371251 NA non-coding downstream 45136 14976320 ~ 14991459 (-)
G371110 NA non-coding downstream 65764 14970576 ~ 14970831 (-)
G371109 NA non-coding downstream 68445 14967822 ~ 14968150 (-)
G371108 NA non-coding downstream 70156 14966135 ~ 14966439 (-)
G371271 NA non-coding upstream 8286 15051764 ~ 15096656 (-)
LOC118936652 LOC106569911 non-coding upstream 38352 15081830 ~ 15136742 (-)
G371289 NA non-coding upstream 58857 15102335 ~ 15102656 (-)
G371286 NA non-coding upstream 76326 15119804 ~ 15140073 (-)
LOC118936653 LOC106569911 non-coding upstream 80625 15124103 ~ 15129366 (-)
G370635 NA other downstream 608004 14427338 ~ 14428591 (-)
G370333 NA other downstream 827890 14207190 ~ 14208705 (-)
G368921 NA other downstream 2330503 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2899805 12134052 ~ 12136790 (-)
G371294 LOC106569911 other upstream 79997 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 652614 15693396 ~ 15707607 (-)
G372122 NA other upstream 932128 15975606 ~ 15976116 (-)
G372123 NA other upstream 935024 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1890757 16909582 ~ 16942359 (-)

Expression


Co-expression Network