LOC110519481 (LOC106569911)


Basic Information

Item Value
gene id LOC110519481
gene name LOC106569911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15056380 ~ 15061384 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976886.1
CAGGATGATTTCTGCACAGGAACTACTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCTTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATGCTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCACACCCACACGCTTCACACCGATTTGCTGTCCCATCCCACCTCCTGGCTCCCGGCCATCCTGCCCGGATGAGACAGACCCATCCGCAGGTCCACCCCAGGTCCCCATTGACTGGCCAGGCAAAGGTCAAGGATGAGGTTAAGAGGCAAGAGACTGCATCGTCTGAGGAATTGTCTGAGGAAGTTCAACGGAGAGGAGCAGAAATTGCAAGCATGTATAAAGCACAGCTGAAAGAGAGGATGGCCcaaaagagaaaggaagagattCTGAAGAAAATGGCAAACAGCGATGACAAGAACGATGACAGTGAGGCCTCCTGCTCCTCTGCAGTAAAACAATCTAATATCCCTGCCACAGCCCCCGAGCGCCCGGACAGCCCAGAGGCCACGCCAGTGGCCGCCCGAGAGGACACTCAGGGGGACACCCAGCAGGACCTGGCAGAGGTTGTGAATGTGCTCAAGAGGCAATCATCTGATCTATACCTGCCTGACGATGTTTGTGAGGAGTCACTCACATGGAAATCCATTTACGAGGAGCTGTGCCCGCTCGCTCACAGAGTGAACACAGAAGCTGACTACATCAAGGCGCTTCGCGTCATCACTGAGAATGCTGTGACTCCCTCGTGCTCGTCTGAGGATGACGTGTCTCAGAGTGTGAGTGAGGACACAAGTCAGGAGGGGAGTAGTGAAAGTGAGGAGAGCATGAGTGGACAACAGCAGAGATGTCTACACAGGGATCCTTATGGTAAGAGGGACAGGAAGGAGATTGATAGTGGTAAAAGGGAAGGGAGATTTGCAACCGCCAATGCAATGTCTATGATGGCGAGCCGAGGGATAGAAGAACTTAATGCCATGAGCTACGCAGACAGGATCAAATATTTCAAGTATGAGGCTAAGAGAAATGAAGAGATGATGAAGATTGAAAGGAGGAAGGAAAAAGCCAGGGACGAAGAGCTCAAAAAGTGGGAAAAGAGACAGAAGAAATTGAATGAGGAGGAAAGGAAAAGGAcagaaaatatggaaaaaaacAAGTTAGAGGAGCAGAGGAAAAGGGAGAAGGCAGAGATGAAACTAAAGATCGAACATGAGAAAAAGAGACAAGAgcaagagaaaaagagggagaaaaaagaaagaaagcagCAGGAGATGCAACAGAAGGCCCGTGCAAAAGAAGAGAAAAAGAGGGCAGAGGAAGAGAaaaagatggagaaacagaggatggaggaggagaggaacaggggaaAGGAGAGAATGAAGGTGTTGGAGATGCAGCAAAAGGCAcgaaagaaagaagagaagaggaggaaagaggaacaGAAAAGGAGATTGAAGATACAACAGGAACAAGAGAAGGAGGAACAGAAAAGGCAGACAAGGATACGGGACGAGGATAAGAAGAGAGCAGAGCTTCAAAGAATAAAAGATCACGAGGCCAGGTTCAAGATGGAGATGGAGAAACtgtatgagagagaagagaggaatgcACAGATTGAAAGAGAAAAGAGGCGTGCGCTGTGTCAGAAaaaaggacagacacagagagcaaaACAGGTGGTGGCATACGAGGTCACAGCGTCTACATCTGACGCCTCTGTgcggagggaagagagagagcagcgtCCAGAGACCGCTCACGCACAGTCTGCAAAGAGGAGAACAAGGAAGAAGCAGAAGAAAGAGGCGGACGAGGCATCGACAACTTTTGAGTAGATGACAAAAGAAAGGGAGCAGACAAAAGAAGAAATGTACAAGTCAATGCTCCTAGGTATGTTGATACATGTAAATAAACAACAGAGTTTTTTTtaagagaaaaaaacaaacaaaaaaatgagaaaataagTAAAAGGAGGAACAAATTATAAGGAAGCCAGGcatgagggtgaagaggaggaaacatgagagaggaggaagagagaccaGAGTGGTTTATCAGGAGGGAAGTAGGAGATATAGAATTCAAGTTCTGATGGACAGAATCAGGAAGGACCATGGGATAAAAGGTAAATGAGATTAGCAGTAAAGAAGAGCTGAGTGGATCGAAAGAAAGTTATGGAAAACACAAGGGGGAGGCAAGATAAACAGAGACCCAGAGAAAAGAGGTGAAAACACTTTAGAAGAATAATAGAGAGGAGATTGAACTAGAATTCTGATGGACATATGGCCAAAATAACTATTTAAATAACTAAGGATTAGCAGAAAAGGAGAAGACCAAGAGCACAGGAAAAATAGCCAACAGACGTCAAAAAGAAAAGAAGTCTGCCTCTTCTACTTCTCTTTTAAAGTTGCTTTGGCTTCCTTTTGTCCTCTTTCTAAGCCTGTTCAAGTCTGAGATAGATGAAAAGAGCAGCCAAAGAAACATCTGTTGAAGCATCAATTGGAAAGGAtgggagggttggaggaggagcaCAGCTGGATGACTTCATTAGGTAAGTGTTTACTATCAAAGCCTGTTCTCTGTAGACAACTGTATTAGTGTTGATAGAAGTATGTTTAGGTAATGTCTTTCAACCCAACCACTACAATTCCTGATCTCATGTGATTATTCACCTCAAGTGAGTGGGCTTTCAGATGTTTTTTCCCGAAACAGATTGTGGCATATGAGGTCTCTTTATCTGTTGAAGCATCAATAGGAAAGGatgaaagggagggaggcaggaagaGGAAAACACAGAAGAGCAGGTGAGGTAAGTGCTTGGGCTTGTGATGAGAGGATAGGGGCTCCACAACTGGGGTTCATGATTGACATTTCTCAGACAAATTGTATTACTGTGAATCCCATTCGTTCAATGACTGTTTGATTAATTCCTGACGGAATAATTGTTTTACAGGAGCACTCTATGTTCTGCTTCCATGTGGATTGACAGCATTGCTTTCATGAGCTTCTGGAGGACAccatggaggaagagggagagggtctATGATAGGCAGTTTGCCATGGCCCTAAATGGGCCTTTGGATGTTAATTCTTTCTGCTTTATATCATACAACTTTACAATAAAAATGAATTGTAAGCATCAGCCTCTTCTGTTGTGTGATCAGTGCAGTAGTAGTAAGATTGGTGTAAACCCAAGGAAtattctggccttctaggcagagttcctctgtccagtgtctgtgttcttttgcccatcttaacatttttattggccagt

Function

NR:

description
golgin subfamily A member 6-like protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976886.1 True 3716 mRNA 0.46 3 15056380 15061384

Neighbor

gene id symbol gene type direction distance location
LOC110516435 LOC106569911 coding downstream 12902 15036595 ~ 15043478 (-)
LOC110523296 LOC106569911 coding downstream 32565 15016756 ~ 15023815 (-)
LOC110524957 LOC106569957 coding downstream 61183 14988147 ~ 14995197 (-)
LOC110523283 LOC106569957 coding downstream 70189 14973249 ~ 14986191 (-)
LOC110523281 lrrc8a coding downstream 97228 14930868 ~ 14959152 (-)
LOC110523297 LOC106569911 coding upstream 17415 15078799 ~ 15082588 (-)
LOC110523286 LOC106569911 coding upstream 37401 15098785 ~ 15117065 (-)
LOC110511258 dnlz coding upstream 58970 14996578 ~ 15121731 (-)
LOC118964741 LOC106569911 coding upstream 64378 15125762 ~ 15127293 (-)
LOC118936653 LOC106569911 coding upstream 66212 15124103 ~ 15129366 (-)
G371274 NA non-coding downstream 2462 15033715 ~ 15053918 (-)
G371272 NA non-coding downstream 4417 15031800 ~ 15051963 (-)
G371268 NA non-coding downstream 7229 15008636 ~ 15049151 (-)
G371276 NA non-coding downstream 13692 15042204 ~ 15042688 (-)
G371258 NA non-coding downstream 64442 14991579 ~ 14991938 (-)
LOC118936652 LOC106569911 non-coding upstream 20446 15081830 ~ 15136742 (-)
G371289 NA non-coding upstream 40951 15102335 ~ 15102656 (-)
G371286 NA non-coding upstream 58420 15119804 ~ 15140073 (-)
LOC110523287 LOC106569911 non-coding upstream 75451 15135601 ~ 15138027 (-)
G370635 NA other downstream 627789 14427338 ~ 14428591 (-)
G370333 NA other downstream 847675 14207190 ~ 14208705 (-)
G368921 NA other downstream 2350288 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2919590 12134052 ~ 12136790 (-)
G371294 LOC106569911 other upstream 62091 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 634708 15693396 ~ 15707607 (-)
G372122 NA other upstream 914222 15975606 ~ 15976116 (-)
G372123 NA other upstream 917118 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1872851 16909582 ~ 16942359 (-)

Expression


Co-expression Network