LOC110518158 (LOC106596183)


Basic Information

Item Value
gene id LOC110518158
gene name LOC106596183
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15065627 ~ 15075700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976894.1
agaagacgaagaatgCACCTGTTCTTTTGTGATTGCTGCCCTGCCCACTATTTAACTGGAAGGAGAGCTATTCCACACAATTGTTTATGCGTTTTCTATGGTTGTTTTTTTTCCAAATCTTGGGGGACAATTGTTGTTGCAACATGGTTTGGTTTCTGATTCTCATCTGGTTTGTCCAAGTGGGCAGTGTTCCCATCACCAATTTCACAAATGCTACTACTTCAAATGCTACTTTCCCTGCCACAGTGGACAATTCTACATACACCAACAATTCTACAAATATGACTTTCACTGCCACAGGTTCTACTGCCTCAATGGGGACACGCCACAGACTAAATGATTGGGTTAAAACGCCTGAAACCAGAGAAGAGGACTTACAGTTCGACCTTGCTATCATGGAGGGAGACATTCTGGTTTCAGAAGACCGATTAGCTGTGAAGTCACTTTGGCCTGAGAAAGATGGCGTCACTTCTATCCCCTACAAGGTCAACGATTATCTGGTGGACAGAAAGGTAACTATACTAGCAGCGTTCAAGATGATTTCAGACCAGACGTGTATCCTCTTCCACGAATACACCAATGAGATTAACTACATAGACATCATCTCTGGGACAGGCTGTGCGTCGTATGTAGGTTTTCAGGGCGGGGCCCAGTCTCTGTACTTCGGTAGAGCCTGTAACGTGGGGAACCTGTGCCATGAGCTGATGCATGCCCTGGGCCTGCACCACGAGCACACACGGCCAGACCGTGACCAATACGTCACCATACAGTGGGACAACGTGGTCCCAGGAAAACAAGAGAACTTTAAGGTGAAGAAAGGAGACACTCAGGACCTGCCCTATGACTACGACTCCATAATGCACTATGGAACATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACGCGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCCAAGAAGATTTCAACACCGCTGCTGTCAACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTG
>TU421793
CCCCATTGTTGGGTTTCTCCTGGCAGATACTACTTCTCATCAAACCGGAACCCCACTATTGACGCCACGAAGAGTGGAGTCCAGATTGGACAGAGAAATCACCTGAGCCCCCTGGACATAACGCGCCTTAACAAACTCTATCAATGTGAATAACAATGCACAGTTTATCACTTATTGCACCATCCAAGAAGATTTCAACACCGCTGCTGTCAACTGAAGATTCCAACACAAATGGCACTGACATTTTAACTTCTCAACAATGAATAAGTTGAACAAGTCCCTTAAAGCTTTCTGATGTATTGTATGTGTGTTCAGCAGCAGGTAGTTTAATTTGTCCTGTGCTCTTGCTGCCTTGAATTAGGCCTATTCCACTGCACTTGTCTTGGAAATAAATCAAATGATCCAGTCAGTGTGATGTTTCTTGCAGTGTTCTATTTCATTCTATAATGGACCTTCTCAGCTATGCTCATCATGCATCCCAAGGTGGGATCAGAGATGAAGTAGATCTAGCATAGCAGGAGAGATGACTTAAATTAATGGTGATTAAGGTATAA

Function

NR:

description
low choriolytic enzyme-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976894.1 False 1257 mRNA 0.45 11 15065627 15075558
TU421793 True 554 lncRNA 0.42 2 15075035 15075700

Neighbor

gene id symbol gene type direction distance location
LOC110519479 LOC106596183 coding upstream 11274 15047739 ~ 15054353 (+)
LOC110523290 LOC106596183 coding upstream 31038 15027803 ~ 15034589 (+)
LOC110518391 LOC106596183 coding upstream 51015 15007790 ~ 15014612 (+)
dnlz dnlz coding upstream 66191 14995248 ~ 14999436 (+)
dolk dolk coding upstream 148949 14901565 ~ 14916678 (+)
LOC110519478 LOC106596183 coding downstream 11320 15086878 ~ 15096757 (+)
uck1 LOC106569943 coding downstream 41666 15117198 ~ 15187954 (+)
LOC110523300 LOC105028392 coding downstream 388997 15464555 ~ 15591443 (+)
st6galnac4 st6galnac4 coding downstream 674633 15750191 ~ 15756190 (+)
st6galnac6 sia7f coding downstream 680701 15756259 ~ 15772026 (+)
G371159 NA non-coding upstream 9409 15015821 ~ 15056218 (+)
G371158 NA non-coding upstream 14691 15010816 ~ 15050936 (+)
G371113 NA non-coding upstream 92553 14972729 ~ 14973074 (+)
G371111 NA non-coding upstream 93837 14971481 ~ 14971790 (+)
G371101 NA non-coding upstream 102696 14962632 ~ 14962931 (+)
G371171 NA non-coding downstream 2149 15077707 ~ 15100378 (+)
G371172 LOC106569911 non-coding downstream 5134 15080692 ~ 15102326 (+)
G371139 NA non-coding downstream 15409 15090967 ~ 15150407 (+)
G371206 NA non-coding downstream 117391 15192949 ~ 15193278 (+)
LOC118964542 LOC106569496 other upstream 260156 14798616 ~ 14805526 (+)
G370414 NA other upstream 697466 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 739732 14321104 ~ 14325895 (+)
G370360 NA other upstream 806494 14255803 ~ 14259133 (+)
G371182 NA other downstream 48732 15124290 ~ 15128817 (+)
G371615 LOC100194725 other downstream 716001 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1144048 16218328 ~ 16220933 (+)
G372373 NA other downstream 1660084 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1794876 16870434 ~ 16882185 (+)

Expression


Co-expression Network