LOC110523297 (LOC106569911)


Basic Information

Item Value
gene id LOC110523297
gene name LOC106569911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15078799 ~ 15082588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976885.1
CAGGATGATTTCTGCACAGGAACTACTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCTTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATGCTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCACACCCACACGCTTCACACCGATTTGCTGTCCCATCCCACCTCCTGGCTCCCGGCCATCCTGCCCGGATGAGACAGACCCATCCGCAGGTCCACCCCAGGTCCCCATTGACTGGCCAGGCAAAGGTCAAGGATGAGGTTAAGAGGCAAGAGACTGCATCGTCTGAGGAATTGTCTGAGGAAGTTCAACGGAGAGGAGCAGAAATTGCAAGCATGTATAAAGCACAGCTGAAAGAGAGGATGGCCcaaaagagaaaggaagagattCTGAAGAAAATGGCAAACAGCGATGACAAGAACGATGACAGTGAGGCCTCCTGCTCCTCTGCAGTAAAACAATCTAATATCCCTGCCACAGCCCCCGAGCGCCCGGACAGCCCAGAGGCCACGCCAGTGGCCGCCCGAGAGGACACTCAGGGGGACACCCAGCAGGACCTGGCAGAGGTTGTGAATGTGCTCAAGAGGCAATCATCTGATCTATACCTGCCTGACGATGTTTGTGAGGAGTCACTCACATGGAAATCCATTTACGAGGAGCTGTGCCCGCTCGCTCACAGAGTGAACACAGAAGCTGACTACATCAAGGCGCTTCGCGTCATCACTGAGAATGCTGTGACTCCCTCGTGCTCGTCTGAGGATGACGTGTCTCAGAGTGTGAGTGAGGACACAAGTCAGGAGGGGAGTAGTGAAAGTGAGGAGAGCATGAGTGGACAACAGCAGAGATGTCTACACAGGGATCCTTATGGTAAGAGGGACAGGAAGGAGATTGATAGTGGTAAAAGGGAAGGGAGATTTGCAACCGCCAATGCAATGTCTATGATGGCGAGCCGAGGGATAGAAGAACTTAATGCCATGAGCTACGCAGACAGGATCAAATATTTCAAGTATGAGGCTAAGAGAAATGAAGAGATGATGAAGATTGAAAGGAGGAAGGAAAAAGCCAGGGACGAAGAGCTCAAAAAGTGGGAAAAGAGACAGAAGAAATTGAATGAGGAGGAAAGGAAAAGGAcagaaaatatggaaaaaaacAAGTTAGAGGAGCAGAGGAAAAGGGAGAAGGCAGAGATGAAACTAAAGATCGAACATGAGAAAAAGAGACAAGAgcaagagaaaaagagggagaaaaaagaaagaaagcagCAGGAGATGCAACAGAAGGCCCGTGCAAAAGAAGAGAAAAAGAGGGCAGAGGAAGAGAaaaagatggagaaacagaggatggaggaggagaggaacaggggaaAGGAGAGAATGAAGGTGTTGGAGATGCAGCAAAAGGCAcgaaagaaagaagagaagaggaggaaagaggaacaGAAAAGGAGATTGAAGATACAACAGGAACAAGAGAAGGAGGAACAGAAAAGGCAGACAAGGATACGGGACGAGGATAAGAAGAGAGCAGAGCTTCAAAGAATAAAAGATCACGAGGCCAGGTTCAAGATGGAGATGGAGAAACtgtatgagagagaagagaggaatgcACAGATTGAAAGAGAAAAGAGGCGTGCGCTGTGTCAGAAaaaaggacagacacagagagcaaaACAGGTGGTGGCATACGAGGTCACAGCGTCTACATCTGACGCCTCTGTgcggagggaagagagagagcagcgtCCAGAGACCGCTCACGCACAGTCTGCAAAGAGGAGAACAAGGAAGAAGCAGAAGAAAGAGGCGGACGAGGCATCGACAACTTTTGAGTAGATGACAAAAGAAAGGGAGCAGACAAAAGAAGAAATGTACAAGTCAATGCTCCTAGGTATGTTGATACATGTAAATAAACAACAGAGTTTTTTTtaagagaaaaaaacaaacaaaaaaatgagaaaataagTAAAAGGAGGAACAAATTATAAGGAAGCCAGGcatgagggtgaagaggaggaaacatgagagaggaggaagagagaccaGAGTGGTTTATCAGGAGG

Function

NR:

description
golgin subfamily A member 6-like protein 22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976885.1 True 2501 mRNA 0.49 3 15078799 15082588

Neighbor

gene id symbol gene type direction distance location
LOC110519481 LOC106569911 coding downstream 17415 15056380 ~ 15061384 (-)
LOC110516435 LOC106569911 coding downstream 35321 15036595 ~ 15043478 (-)
LOC110523296 LOC106569911 coding downstream 54984 15016756 ~ 15023815 (-)
LOC110524957 LOC106569957 coding downstream 83602 14988147 ~ 14995197 (-)
LOC110523283 LOC106569957 coding downstream 92608 14973249 ~ 14986191 (-)
LOC110523286 LOC106569911 coding upstream 16197 15098785 ~ 15117065 (-)
LOC110511258 dnlz coding upstream 37766 14996578 ~ 15121731 (-)
LOC118964741 LOC106569911 coding upstream 43174 15125762 ~ 15127293 (-)
LOC118936653 LOC106569911 coding upstream 45008 15124103 ~ 15129366 (-)
LOC118936652 LOC106569911 coding upstream 48920 15081830 ~ 15136742 (-)
G371274 NA non-coding downstream 24881 15033715 ~ 15053918 (-)
G371272 NA non-coding downstream 26836 15031800 ~ 15051963 (-)
G371268 NA non-coding downstream 29648 15008636 ~ 15049151 (-)
G371276 NA non-coding downstream 36111 15042204 ~ 15042688 (-)
G371258 NA non-coding downstream 86861 14991579 ~ 14991938 (-)
G371289 NA non-coding upstream 19747 15102335 ~ 15102656 (-)
G371286 NA non-coding upstream 37216 15119804 ~ 15140073 (-)
LOC110523287 LOC106569911 non-coding upstream 54247 15135601 ~ 15138027 (-)
G371285 NA non-coding upstream 65959 15148547 ~ 15149001 (-)
G370635 NA other downstream 650208 14427338 ~ 14428591 (-)
G370333 NA other downstream 870094 14207190 ~ 14208705 (-)
G368921 NA other downstream 2372707 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2942009 12134052 ~ 12136790 (-)
G371294 LOC106569911 other upstream 40887 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 613504 15693396 ~ 15707607 (-)
G372122 NA other upstream 893018 15975606 ~ 15976116 (-)
G372123 NA other upstream 895914 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1851647 16909582 ~ 16942359 (-)

Expression


Co-expression Network