uck1 (LOC106569943)


Basic Information

Item Value
gene id uck1
gene name LOC106569943
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15117198 ~ 15187954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976892.1
CACGTTGAGGACAACACGCTTGACGGTACCGAATGTAAAATATTTTCGTAGCAATTTTCCTCAATGTTTCAACAGAATACAATCCGGGTTACGAATCGTATATTTTGGCATAGAAGTTATAATTTGTCGAGATCATGGACTCAGTTATCAAGGACAATACTACTGCACGTACAACCGCTTGCATCAGGGACCAGTCAATGGTCCTCTTCACAGTCAAGACAGCAGTGGTCCGAAGAGACGTACCTCTACATAACCAATTCTCTACCACAACACACGTCTGCAGCGATTCTATTGGGAAGATTCATTCAACGCATTACCACTTGGTTTACACATGCAAGTCTACCGTATGTGCCAAAATCATGGAGTTACTGGGCCAGAACAAGGTGGACCATCATCAGAGGAAAGTTGCTATCGTCAGCCAAGACAGTTTCTACAGAGTCTTGACACTTGACCAGAAGGCCAAGGCACTCAAGGGCCAGTACAACTTTGACCACCcagACGCTTTTGACAACGAGTTGATGTACCAAACCCTGAAGGATATTGTGgaggggagtgtggtggaggtgcCGACATATGACTTTGTCACGCATTCCAGGCTGCCGGACAGGATCATGGTGTACCCGGCTGACGTGGTTCTGTTTGAGGGCATTCTGGTATTCTACTCTCAGGAAGTGAGGGACATGTTTCACATGAAGCTCTTTGTGGACACTGACTCTGATGTCAGGCTTTCCCACAGAGTTCTGCGGGACATGAAGAGGGACAGAGACCTGGAGCAGATCCTTAACCAGTACACTACGTTTGTCAAGCCAGCCTTCGAGGAGTTCTGTTTACCTACCAAGAAATATGCAGATGTAATTATTCCTAGAGGAGTTGACAACATGGTGGCCATCAACCTCATCGTGCAGCACATCCTGAATGAGGACCTCTGTAAGTGGCAGCATGGAGGAGTGGTGAACGGGCACAGCCGTGGTTTCAAGCGGGCCTTCTCGGAGCAGGGGGACCTGGACAACGCCACAACCAACCTTCCCCTAGGGAAGAGGGTCCTACTGGAGCCGAGCAGTCGCCCCCACTGAGGCagccatctctgtgtgtgtgtttactctgACTGACAGTCTACTTCTATatacactttcctaatattgagttgcacccccttttgccatcagaacagcctcaattcgttggagcatgggctctacaaggtgttgtaagcattccacagggatgctggcccatgttgactccaatgcttcccacagttgtgccaagttggctg
>XM_021601872.2
CCCTTTACAAGCATGGACTTTGATGCATATTATGATTGTTTTTATTTCatataaattgtatttatttcatataaatatatataattgttTGTATTTCCTGAGGGGTCTCCTGTGTGTATTTGGGCCCGAAAAGACCACTTTCTTTTATACGCACTCGTGCAATCATTGTAGTCCTCTCCTGCATGCTTCAGAGAACCAGTAGGCCTATGCAATAGAGCATTATTACAAAAACGACATGGTGGCCAATTGAATGTATAATTGCAACATTACAGATTTTTTTACACACTTATTTAATGAGTTTCAAAATAAGTATCCTAATTTTGATGTTTTTACAAACATTATTTTTCTGAAGGAAGTGATGTCCATGTTCTCGCACATTTGAATGTGAACAGATTGTTTTGTAaagcaggtggactggggagatTCAGTATTGTTCAACAGTCGAGGGAAACTGATAGGCTGATTGTGAAGAAGGTGGATTATATGGTGTTATTCGGGCATGTGATTAATTGTAATGCACAAACGAACTAAGAAACTGGACATAATAGTATCTGCGGATGAAAGGTTTTTGGGTTTCAAGGTCTACACTGCTCAGTGCAAAGAATACTGTCCGAAGATGCTCTTTTTTTTCTCTGGCCCCAGTGCCTGTAGGGATGGGCGTTGGCAGTTGAATCGAATAAAGGAGTACATcgagttttttgtttttgttcagttttATTTTGTTAATTGTTTGGCCAGATATACAGCCAaaacagtaggtggcggcatgcaccaATATAATTTGTTTTTGCTGACCGCCATAATATCAAAGAAGAAGTCCCCGTACAGCAATACACCAATTGGTGGGATGCCATAGAACTTTCAAGAACAAGGAAGCTTTCTAAACAAGCGACGATAAGCCTGCTGTTAATCGACCCGATATGACTGCTATCAGACCATTCGAGATGGAGCGTCCAAGACACCGTCCGTTTCTGATTGGTGTTAGCGGAGGAACTGCCAGTGGCAAGTCTACCGTATGTGCCAAAATCATGGAGTTACTGGGCCAGAACAAGGTGGACCATCATCAGAGGAAAGTTGCTATCGTCAGCCAAGACAGTTTCTACAGAGTCTTGACACTTGACCAGAAGGCCAAGGCACTCAAGGGCCAGTACAACTTTGACCACCcagACGCTTTTGACAACGAGTTGATGTACCAAACCCTGAAGGATATTGTGgaggggagtgtggtggaggtgcCGACATATGACTTTGTCACGCATTCCAGGCTGCCGGACAGGATCATGGTGTACCCGGCTGACGTGGTTCTGTTTGAGGGCATTCTGGTATTCTACTCTCAGGAAGTGAGGGACATGTTTCACATGAAGCTCTTTGTGGACACTGACTCTGATGTCAGGCTTTCCCACAGAGTTCTGCGGGACATGAAGAGGGACAGAGACCTGGAGCAGATCCTTAACCAGTACACTACGTTTGTCAAGCCAGCCTTCGAGGAGTTCTGTTTACCTACCAAGAAATATGCAGATGTAATTATTCCTAGAGGAGTTGACAACATGGTGGCCATCAACCTCATCGTGCAGCACATCCTGAATGAGGACCTCTGTAAGTGGCAGCATGGAGGAGTGGTGAACGGGCACAGCCGTGGTTTCAAGCGGGCCTTCTCGGAGCAGGGGGACCTGGACAACGCCACAACCAACCTTCCCCTAGGGAAGAGGGTCCTACTGGAGCCGAGCAGTCGCCCCCACTGAGGCagccatctctgtgtgtgtgtttactctgACTGACAGTCTACTTCTATatacactttcctaatattgagttgcacccccttttgccatcagaacagcctcaattcgttggagcatgggctctacaaggtgttgtaagcattccacagggatgctggcccatgttgactccaatgcttcccacagttgtgccaagttggctg
>TU421776
TACGCGTCATTAGATTGCGACTCAATCACGTTGAGGACAACACGCTTGACGGTACCGAATGTAAAATATTTTCGTAGCAATTTTCCTCAATGTTTCAACAGAATACAATCCGGGTTACGAATCGTATATTTTGGCATAGAAGTTATAATTTGTCGAGATCATGGACTCAGTTATCAAGGACAATACTACTGCACGTACAACCGCTTGCATCAGGGACCAGTCAATGGTCCTCTTCACAGTCAAGACAGCAGTGGTCCGAAGAGACGTACCTCTACATAACCAATTCTCTACCACAACACACAGTGAAACGGGGAGGTACTATTTGAACTTGTCCAATGAGATACGTACGCTCAGtcgttttctgttgcaaaatggccctaatgaacacaatgaAACATGGTAAGCTCGGAGGAAATCAATATTTGACATAATAATTGCTGGATGGAGAAAATGCCATTTCCAAAGAGAGCTCCGTTAAAATTAAAGCACACCCTTTGACGAAAACAACATTGTAATTTAGCATGGTCcaaaaat

Function

NR:

description
DNL-type zinc finger protein

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976892.1 False 1276 mRNA 0.49 7 15117224 15145520
XM_021601872.2 False 1945 mRNA 0.45 7 15138641 15145520
TU421776 True 534 lncRNA 0.41 2 15117198 15187954

Neighbor

gene id symbol gene type direction distance location
LOC110519478 LOC106596183 coding upstream 20467 15086878 ~ 15096757 (+)
LOC110518158 LOC106596183 coding upstream 41666 15065627 ~ 15075700 (+)
LOC110519479 LOC106596183 coding upstream 62871 15047739 ~ 15054353 (+)
LOC110523290 LOC106596183 coding upstream 82635 15027803 ~ 15034589 (+)
LOC110518391 LOC106596183 coding upstream 102612 15007790 ~ 15014612 (+)
LOC110523300 LOC105028392 coding downstream 319035 15464555 ~ 15591443 (+)
st6galnac4 st6galnac4 coding downstream 604671 15750191 ~ 15756190 (+)
st6galnac6 sia7f coding downstream 610739 15756259 ~ 15772026 (+)
LOC110523312 surf1 coding downstream 643275 15788795 ~ 15791028 (+)
med22 med22 coding downstream 650657 15796177 ~ 15810502 (+)
G371172 LOC106569911 non-coding upstream 14898 15080692 ~ 15102326 (+)
G371171 NA non-coding upstream 16846 15077707 ~ 15100378 (+)
G371170 NA non-coding upstream 28684 15067025 ~ 15088540 (+)
G371159 NA non-coding upstream 61006 15015821 ~ 15056218 (+)
G371206 NA non-coding downstream 47429 15192949 ~ 15193278 (+)
G371367 NA non-coding downstream 110582 15256102 ~ 15256318 (+)
G371420 NA non-coding downstream 201608 15347128 ~ 15347847 (+)
G371452 NA non-coding downstream 272973 15418493 ~ 15418732 (+)
G371453 NA non-coding downstream 273457 15418977 ~ 15419301 (+)
LOC118964542 LOC106569496 other upstream 311753 14798616 ~ 14805526 (+)
G370414 NA other upstream 749063 14367672 ~ 14368161 (+)
G370382 smarcb1 other upstream 791329 14321104 ~ 14325895 (+)
G370360 NA other upstream 858091 14255803 ~ 14259133 (+)
G371615 LOC100194725 other downstream 646039 15791559 ~ 15795122 (+)
G372281 LOC106569177 other downstream 1074086 16218328 ~ 16220933 (+)
G372373 NA other downstream 1590122 16735642 ~ 16738500 (+)
G372618 LOC105030512 other downstream 1724914 16870434 ~ 16882185 (+)
G373726 NA other downstream 2558593 17704113 ~ 17707757 (+)

Expression

uck1(LOC106569943) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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uck1(LOC106569943) Expression in each Bioproject

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uck1(LOC106569943) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network