LOC110511258 (dnlz)


Basic Information

Item Value
gene id LOC110511258
gene name dnlz
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14996578 ~ 15121731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051660.1
ATGTTGATAGATGTAAATAAACAAGAGTTTTTTTaagagaaaaaacaaacaaaaaaatgagaaaataagTAAAAGGAGGAACAAATTATAAGGAAGCCAGGcatgagggtgaagaggaggaaacatgagagaggaggaagagagaccaGAGTGGTTTATCAGGAGGGAAGTAGGAGATATAGAATTCAAGTTCTGATGGACAGAATCAGGAAGGACCATGGGATAAAAGGTCAAGTTAAAGTTGCTTTGGCTTCCTTTTGTCCTCTTTCTAAGCCTGTTCAAGTCTGAGATAGATGAAAAGAGCAGCCAAAGAAACATCTGTTGAAGCATCTATTGGAAAGGAtgggagggttggaggaggagcaCAGCTGGATGACTTCATTAGATTGTGGCATATGAGGTCTCTTTATCTGTTGAAGCATCAATAGGAAAGGatgaaagggagggaggcaggaagaGGAAAACACAGAAGAGCAGGTGAGGAGCACTCTATGTTCTGCTTCCATGTGGATTGACAGCATTGCTTTCATGAGCTTCTGGAGGACAccatggaggaagagggagagggtctATGATAGGCAGTTTGCCATGGCCCTAAATGGGCCTTTGGATGTTAATTCTTCATGCTTTATATCATACAACTTTACAATAAAAATGAATTGCAAGCATCAGCCTCTTCTGTTGTGTGATCAGTGCAGTAGTAGTAAGAATGGTGTAAACCCAAGGAATATTCTGGCAGTAGTGTTCAGTTGGTATAAAATAGTGTGATAAGAAATTATCAACATCGTATGAAAACAATATGGAGATAGAAATATCAAAAGAAGTGTTACATTTACTTAGTAATATCAATTTTTCCCCTCATAGAGAACGATGTCCTTGTtgtgcgcacacacacccacacccacagagAGTTAGTCATGATTTCCCTGAGTCATCAGACTCTGGTGAAGGTTTCTTTGCATCTTGAGCAGTCCGTGTTGTATCCTTGCCGGACTCATCTATAACAATCTCGAAGGCCGCCTCTTCTTCTACCCTCTTCACTTTCTCCCCTTTCGCTGCAAGGATTTCCTCAA
>XR_005051661.1
ATGTTGATAGATGTAAATAAACAAGAGTTTTTTTaagagaaaaaacaaacaaaaaaatgagaaaataagTAAAAGGAGGAACAAATTATAAGGAAGCCAGGcatgagggtgaagaggaggaaacatgagagaggaggaagagagaccaGAGTGGTTTATCAGGAGGGAAGTAGGAGATATAGAATTCAAGTTCTGATGGACAGAATCAGGAAGGACCATGGGATAAAAGGTCAAGTTAAAGTTGCTTTGGCTTCCTTTTGTCCTCTTTCTAAGCCTGTTCAAGTCTGAGATAGATGAAAAGAGCAGCCAAAGAAACATCTGTTGAAGCATCTATTGGAAAGGAtgggagggttggaggaggagcaCAGCTGGATGACTTCATTAGCATCAATAGGAAAGGatgaaagggagggaggcaggaagaGGAAAACACAGAAGAGCAGGTGAGGAGCACTCTATGTTCTGCTTCCATGTGGATTGACAGCATTGCTTTCATGAGCTTCTGGAGGACAccatggaggaagagggagagggtctATGATAGGCAGTTTGCCATGGCCCTAAATGGGCCTTTGGATGTTAATTCTTCATGCTTTATATCATACAACTTTACAATAAAAATGAATTGCAAGCATCAGCCTCTTCTGTTGTGTGATCAGTGCAGTAGTAGTAAGAATGGTGTAAACCCAAGGAATATTCTGGCAGTAGTGTTCAGTTGGTATAAAATAGTGTGATAAGAAATTATCAACATCGTATGAAAACAATATGGAGATAGAAATATCAAAAGAAGTGTTACATTTACTTAGTAATATCAATTTTTCCCCTCATAGAGAACGATGTCCTTGTtgtgcgcacacacacccacacccacagagAGTTAGTCATGATTTCCCTGAGTCATCAGACTCTGGTGAAGGTTTCTTTGCATCTTGAGCAGTCCGTGTTGTATCCTTGCCGGACTCATCTATAACAATCTCGAAGGCCGCCTCTTCTTCTACCCTCTTCACTTTCTCCCCTTTCGCTGCAAGGATTTCCTCAA
>TU421939
AGTAGTGTTCAGTTGGTATAAAATAGTGTGATAAGAAATTATCAACATCGTATGAAAACAATATGGAGATAGAAATATCAAAAGAAGTGTTACATTTACTTAGTAATATCAATTTTTCCCCTCATAGAGAACGATGTCCTTGTtgtgcgcacacacacccacacccacagagAGTTAGTCATGATTTCCCTGAGTCATCAGACTCTGGTGAAGGTTTCTTTGCATCTTGAGCAGTCCGTGTTGTATCCTTGCCGGACTCATCTATAACAATCTCGAAGGCCGCCTCTTCTTCTACCCTCTTCACTTTCTCCCCTTTCGCTGCAAGGATTTCCTCAATGTTCCTCTTTCCCTTCAGATCAGAGAACCAACCCAAGTTGTCAGCAATAATGTGATGTTTTTCACATCCTGGGCAGGTCACTAGGACAACACCTTTATGATAGGCTACCTTGGATATCCTCTTCGTTGACCTGGTTGAGC

Function

symbol description
dnlz Predicted to enable chaperone binding activity. Predicted to be involved in protein folding; protein import into mitochondrial matrix; and protein stabilization. Predicted to be active in mitochondrion. Orthologous to human DNLZ (DNL-type zinc finger).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051660.1 False 1073 mRNA 0.41 3 15120354 15121731
XR_005051661.1 False 1039 mRNA 0.41 3 15120354 15121731
TU421939 True 477 lncRNA 0.42 2 14996578 15120689

Neighbor

gene id symbol gene type direction distance location
LOC110523286 LOC106569911 coding downstream 3289 15098785 ~ 15117065 (-)
LOC110523297 LOC106569911 coding downstream 37766 15078799 ~ 15082588 (-)
LOC110519481 LOC106569911 coding downstream 58970 15056380 ~ 15061384 (-)
LOC110516435 LOC106569911 coding downstream 76876 15036595 ~ 15043478 (-)
LOC110523296 LOC106569911 coding downstream 96539 15016756 ~ 15023815 (-)
LOC118964741 LOC106569911 coding upstream 4031 15125762 ~ 15127293 (-)
LOC118936653 LOC106569911 coding upstream 5865 15124103 ~ 15129366 (-)
LOC118936652 LOC106569911 coding upstream 9777 15081830 ~ 15136742 (-)
LOC118964536 LOC106596987 coding upstream 12136 15133867 ~ 15134505 (-)
LOC118964537 LOC106569911 coding upstream 12961 15134692 ~ 15135479 (-)
G371289 NA non-coding downstream 17698 15102335 ~ 15102656 (-)
G371271 NA non-coding downstream 23698 15051764 ~ 15096656 (-)
G371274 NA non-coding downstream 66436 15033715 ~ 15053918 (-)
G371272 NA non-coding downstream 68391 15031800 ~ 15051963 (-)
G371268 NA non-coding downstream 71203 15008636 ~ 15049151 (-)
LOC110523287 LOC106569911 non-coding upstream 15104 15135601 ~ 15138027 (-)
G371285 NA non-coding upstream 26816 15148547 ~ 15149001 (-)
G371331 NA non-coding upstream 83212 15204943 ~ 15206323 (-)
G371356 NA non-coding upstream 130183 15251914 ~ 15252125 (-)
LOC110524957 LOC106569957 other downstream 125195 14988147 ~ 14995197 (-)
G370635 NA other downstream 691763 14427338 ~ 14428591 (-)
G370333 NA other downstream 911649 14207190 ~ 14208705 (-)
G368921 NA other downstream 2414262 12705566 ~ 12706092 (-)
G368612 ctxn3 other downstream 2983564 12134052 ~ 12136790 (-)
G371294 LOC106569911 other upstream 1744 15123475 ~ 15124789 (-)
LOC110523302 NA other upstream 574361 15693396 ~ 15707607 (-)
G372122 NA other upstream 853875 15975606 ~ 15976116 (-)
G372123 NA other upstream 856771 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1812504 16909582 ~ 16942359 (-)
LOC110523283 LOC106569957 coding downstream 10387 14973249 ~ 14986191 (-)
LOC110523281 lrrc8a coding downstream 37426 14930868 ~ 14959152 (-)
phyhd1 phyhd1 coding downstream 71038 14914865 ~ 14925540 (-)
nup188 nup188 coding downstream 84987 14891979 ~ 14911591 (-)
G371258 NA non-coding downstream 4640 14991579 ~ 14991938 (-)
G371251 NA non-coding downstream 5119 14976320 ~ 14991459 (-)
G371110 NA non-coding downstream 25747 14970576 ~ 14970831 (-)
G371109 NA non-coding downstream 28428 14967822 ~ 14968150 (-)
G371108 NA non-coding downstream 30139 14966135 ~ 14966439 (-)

Expression


Co-expression Network