LOC118936653 (LOC106569911)


Basic Information

Item Value
gene id LOC118936653
gene name LOC106569911
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15124103 ~ 15129366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051664.1
CTAAGATTGAAAATAACAAGCTTGTATCATGATAACCTCATTTCTGACTGCATGTTTGTCATCATTTTCATTTCTAGCCATGGGCAAATCGGACTGCACAGGATGATTTCTGCACAGGAACTAGTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCCTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCA
>TU421989
GAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGGTAACAAGAGCCGTTTTCTTTAATCAGACTTTCATAtaagtagatatactgtagttgcTTTAGATGTTCCCAATCCTGATACACAGAAATGAGATCTAAATAGATAGAATAGTGAAATAAGAAGGCAAGAAAAAGAACTGCACACTGGaagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgaattctgcactggtagtattcctaggaaggtctgcattctgcactggtagtattattaagaaggtctgcattctgcactggtagtattctcAGGAAGGTCTGaattctgcactggtagtattattaagaaggtctgc

Function

NR:

description
uncharacterized protein LOC110519481

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051664.1 False 514 mRNA 0.48 3 15127596 15129366
TU421989 True 608 lncRNA 0.43 3 15124103 15128857

Neighbor

gene id symbol gene type direction distance location
LOC118964741 LOC106569911 coding downstream 303 15125762 ~ 15127293 (-)
LOC110511258 dnlz coding downstream 5865 14996578 ~ 15121731 (-)
LOC110523286 LOC106569911 coding downstream 10531 15098785 ~ 15117065 (-)
LOC110523297 LOC106569911 coding downstream 45008 15078799 ~ 15082588 (-)
LOC110519481 LOC106569911 coding downstream 66212 15056380 ~ 15061384 (-)
LOC118936652 LOC106569911 coding upstream 2142 15081830 ~ 15136742 (-)
LOC118964536 LOC106596987 coding upstream 4501 15133867 ~ 15134505 (-)
LOC118964537 LOC106569911 coding upstream 5326 15134692 ~ 15135479 (-)
LOC110523287 LOC106569911 coding upstream 6235 15135601 ~ 15138027 (-)
rapgef1b LOC106569917 coding upstream 20072 15149438 ~ 15225332 (-)
G371289 NA non-coding downstream 24940 15102335 ~ 15102656 (-)
G371271 NA non-coding downstream 30940 15051764 ~ 15096656 (-)
G371274 NA non-coding downstream 73678 15033715 ~ 15053918 (-)
G371272 NA non-coding downstream 75633 15031800 ~ 15051963 (-)
G371285 NA non-coding upstream 19181 15148547 ~ 15149001 (-)
G371331 NA non-coding upstream 75577 15204943 ~ 15206323 (-)
G371356 NA non-coding upstream 122548 15251914 ~ 15252125 (-)
G371364 NA non-coding upstream 124811 15254177 ~ 15254802 (-)
G371294 LOC106569911 other downstream 2807 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 132437 14988147 ~ 14995197 (-)
G370635 NA other downstream 699005 14427338 ~ 14428591 (-)
G370333 NA other downstream 918891 14207190 ~ 14208705 (-)
G368921 NA other downstream 2421504 12705566 ~ 12706092 (-)
LOC110523302 NA other upstream 566726 15693396 ~ 15707607 (-)
G372122 NA other upstream 846240 15975606 ~ 15976116 (-)
G372123 NA other upstream 849136 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1804869 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1994671 17124037 ~ 17125807 (-)
LOC110516435 LOC106569911 coding downstream 80625 15036595 ~ 15043478 (-)
G368612 ctxn3 other downstream 2987313 12134052 ~ 12136790 (-)

Expression


Co-expression Network