LOC118936652 (LOC106569911)


Basic Information

Item Value
gene id LOC118936652
gene name LOC106569911
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15081830 ~ 15136742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051663.1
CTAAGATTGAAAATAACAAGCTTGTATCATGATAACCTCATTTCTGACTGCATGTTTGTCATCATTTTCATTTCTAGCCATGGGCAAATCGGACTGCACAGGATGATTTCTGCACAGGAACTAGTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCCTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATGCTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCATACCCACACACTTCACACCGATTTGCTGTC
>TU421974
cattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggaagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgaattctgcactggtagtattctgaggaaggcctgtgttctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggta
>TU421975
cattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggaagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgaattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgaattctgcactggtagtattcctaggaaggtctgcattctgcactggtagtattattaagaaggtctgcattctgcactggtagtattctcAGGAAGGTCTGaattctgcactggtagtattattaagaaggtctgcattctgcactggtagtattaTTAAGAAGTTCTGaattctgcactggtagtattcttAAGAAGGTCAGaattctgcactggtagtattcttAAGAAGGTCAGaattctgcactggtagtattctgaggaaggtctgtgttctgcactggtagtatttTTGGGAAGGTCTGCATTCTTATAATAAAGTTGAAAAGGAATGGAAGAATTTCTAAATTGGAATGATTCCAAAAGTGTGGACCTTCCCATTTTCCTAAGAGGCTAATATACAGTAATAAAACGTGTTTTCTCTATGATATTTATTACCCATACACATGTAATTGTTTTAAGatagtaataacaataaccaTCAAGCTATTAAGTAATAAAAGTGTGTCTGTCATCATACAGATTGGGGTGGATAAAGGGG

Function

NR:

description
hypothetical protein cypCar_00035144

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051663.1 False 695 mRNA 0.50 3 15131508 15133459
TU421974 False 423 lncRNA 0.47 3 15081830 15136742
TU421975 True 882 lncRNA 0.40 2 15131768 15136742

Neighbor

gene id symbol gene type direction distance location
LOC118936653 LOC106569911 coding downstream 2142 15124103 ~ 15129366 (-)
LOC118964741 LOC106569911 coding downstream 4215 15125762 ~ 15127293 (-)
LOC110511258 dnlz coding downstream 9777 14996578 ~ 15121731 (-)
LOC110523286 LOC106569911 coding downstream 14443 15098785 ~ 15117065 (-)
LOC110523297 LOC106569911 coding downstream 48920 15078799 ~ 15082588 (-)
LOC118964536 LOC106596987 coding upstream 408 15133867 ~ 15134505 (-)
LOC118964537 LOC106569911 coding upstream 1233 15134692 ~ 15135479 (-)
LOC110523287 LOC106569911 coding upstream 2142 15135601 ~ 15138027 (-)
rapgef1b LOC106569917 coding upstream 15979 15149438 ~ 15225332 (-)
setx LOC106569805 coding upstream 476887 15610346 ~ 15679579 (-)
G371289 NA non-coding downstream 28852 15102335 ~ 15102656 (-)
G371271 NA non-coding downstream 34852 15051764 ~ 15096656 (-)
G371274 NA non-coding downstream 77590 15033715 ~ 15053918 (-)
G371285 NA non-coding upstream 15088 15148547 ~ 15149001 (-)
G371331 NA non-coding upstream 71484 15204943 ~ 15206323 (-)
G371356 NA non-coding upstream 118455 15251914 ~ 15252125 (-)
G371364 NA non-coding upstream 120718 15254177 ~ 15254802 (-)
G371294 LOC106569911 other downstream 6719 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 136349 14988147 ~ 14995197 (-)
G370635 NA other downstream 702917 14427338 ~ 14428591 (-)
G370333 NA other downstream 922803 14207190 ~ 14208705 (-)
G368921 NA other downstream 2425416 12705566 ~ 12706092 (-)
LOC110523302 NA other upstream 562633 15693396 ~ 15707607 (-)
G372122 NA other upstream 842147 15975606 ~ 15976116 (-)
G372123 NA other upstream 845043 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1800776 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1990578 17124037 ~ 17125807 (-)
LOC110519481 LOC106569911 coding downstream 20446 15056380 ~ 15061384 (-)
LOC110516435 LOC106569911 coding downstream 38352 15036595 ~ 15043478 (-)
LOC110523296 LOC106569911 coding downstream 58015 15016756 ~ 15023815 (-)
LOC110523283 LOC106569957 coding downstream 95639 14973249 ~ 14986191 (-)
dolpp1 dolpp1 coding upstream 587047 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 603331 15740073 ~ 15752753 (-)
G371272 NA non-coding downstream 29867 15031800 ~ 15051963 (-)
G371268 NA non-coding downstream 32679 15008636 ~ 15049151 (-)
G371276 NA non-coding downstream 39142 15042204 ~ 15042688 (-)
G371258 NA non-coding downstream 89892 14991579 ~ 14991938 (-)
G368612 ctxn3 other downstream 2945040 12134052 ~ 12136790 (-)

Expression


Co-expression Network