LOC110523287 (LOC106569911)


Basic Information

Item Value
gene id LOC110523287
gene name LOC106569911
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15135601 ~ 15138027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051662.1
AATTCAAGGTCAAAATCATTGCTATATTTTGGATGGTTATTTTGGTGGTAAGTAGTTGTGACCACTTGTGATTTAGTGTGAAAAGGCCTACTTTGTGGCACAATTTAATTTAGATGATttgaataatataataatatttttAAGCCATATTGTATCTTTTTCAGGATTACTGTAATTGAAGGAACTATGGGAAAGTTCTCCTTTCCAAGGCTCATCATAAGAATGGTTAGAATCTCTTTTCTCTCACCACCCCCATAGTCAAAACTCCAGTGATTTAAAATCATCACTTTGACATATGAGCTTTTCTAAGATTGAAAATAACAAGCTTGTATCATGATAACCTCATTTCTGACTGCATGTTTGTCATCATTTTCATTTCTAGCCATGGGCAAATCGGACTGCACAGGATGATTTCTGCACAGGAACTAGTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGATTGGGGTGGATAAAGGGGTGATCAAGCAGCGCTCCACCTCCTCCATTATTTGTCCCGTCTCCCCGACACTGCCAGCTTTCCCCTGGTACAACCACCACAGgtacctcgccaacagccaatcgGAGCCTGACCAGCATGCTGCCGGCACCCAGAAGGACCCACCTAAGAAACACTCAATCTTTCCCCCTCTGGACACACAGAGCTGCACCTCCCCTGATAAATGGCCTCATTCTCCGTCCAAGACGTCATACCCACACACTTCACACCGATTTGCTGTC
>TU421990
TCATTTCTGACTGCATGTTTGTCATCATTTTCATTTCTAGCCATGGGCAAATCGGACTGCACAGGATGATTTCTGCACAGGAACTAGTGAACTCCACAGGCCCAGAACACACCAGCCTCACAACTCCTCACAACTCCCCAGCCTTAATGTGTGTAGGCAGGACAAGGAGAACACCGATTCAATCCAGAAGAAGAGGAAAAAGAAGAGGCTAAATGAGAAGGGAACCCAGGTTGAACTAGGCATGCGGGAGGATATCCATGACCTTGACCTCGCCCATTGGAGATTGGCTAGAGAGACATGGAGAACTGAGCGAGGAAACATGAGGGAGATTAAGGCGCTGTATGGAGAAATATTTAGGCTGCACCAACTCTTGGAGGAGGTAACAAGAGCCATTTTCTTTAATCAGACTTTCATAtaagtagatatactgtagttgcTTTAGATGTTCCCAATCCTGATACACAGAAATGAGATCTAAATAGATAGAATAGTGAAATAAGAAGGCAAGAAAAAGAACTGCACACTGGaagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcactggtagtattctgaggaaggtctgcattctgcac

Function

NR:

description
golgin subfamily A member 6-like protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051662.1 False 1000 mRNA 0.45 3 15135601 15138027
TU421990 True 626 lncRNA 0.44 2 15136835 15137685

Neighbor

gene id symbol gene type direction distance location
LOC118964537 LOC106569911 coding downstream 122 15134692 ~ 15135479 (-)
LOC118964536 LOC106596987 coding downstream 1096 15133867 ~ 15134505 (-)
LOC118936652 LOC106569911 coding downstream 2142 15081830 ~ 15136742 (-)
LOC118936653 LOC106569911 coding downstream 6235 15124103 ~ 15129366 (-)
LOC118964741 LOC106569911 coding downstream 8308 15125762 ~ 15127293 (-)
rapgef1b LOC106569917 coding upstream 11411 15149438 ~ 15225332 (-)
setx LOC106569805 coding upstream 472319 15610346 ~ 15679579 (-)
LOC110523302 NA coding upstream 555578 15693396 ~ 15707607 (-)
dolpp1 dolpp1 coding upstream 585762 15723789 ~ 15734869 (-)
miga2 miga2 coding upstream 602046 15740073 ~ 15752753 (-)
G371289 NA non-coding downstream 32945 15102335 ~ 15102656 (-)
G371271 NA non-coding downstream 38945 15051764 ~ 15096656 (-)
G371274 NA non-coding downstream 81683 15033715 ~ 15053918 (-)
G371272 NA non-coding downstream 83638 15031800 ~ 15051963 (-)
G371285 NA non-coding upstream 10520 15148547 ~ 15149001 (-)
G371331 NA non-coding upstream 66916 15204943 ~ 15206323 (-)
G371356 NA non-coding upstream 113887 15251914 ~ 15252125 (-)
G371364 NA non-coding upstream 116150 15254177 ~ 15254802 (-)
G371849 NA non-coding upstream 144933 15282960 ~ 15283473 (-)
G371294 LOC106569911 other downstream 10812 15123475 ~ 15124789 (-)
LOC110524957 LOC106569957 other downstream 140442 14988147 ~ 14995197 (-)
G370635 NA other downstream 707010 14427338 ~ 14428591 (-)
G370333 NA other downstream 926896 14207190 ~ 14208705 (-)
G368921 NA other downstream 2429509 12705566 ~ 12706092 (-)
G372122 NA other upstream 837579 15975606 ~ 15976116 (-)
G372123 NA other upstream 840475 15978502 ~ 15981215 (-)
LOC110523341 LOC106569324 other upstream 1796208 16909582 ~ 16942359 (-)
G373228 LOC106569424 other upstream 1986010 17124037 ~ 17125807 (-)
LOC110511258 dnlz non-coding downstream 16146 14996578 ~ 15121731 (-)

Expression


Co-expression Network